mRNA_E-fasciculatus_F_contig14499.3250.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: A0A6H5KE21_9PHAE (E2F_TDP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE21_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 7.880e-14 Identity = 35/45 (77.78%), Postives = 36/45 (80.00%), Query Frame = 1
Query: 1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGTHTAATP 135
T +VPDPDEGMPQGERRYQIYLKSP GPIDVYVVSQV P
Sbjct: 191 TLEVPDPDEGMPQGERRYQIYLKSPSGPIDVYVVSQVDERIEPGP 235
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: D8LEV2_ECTSI (Transcription factor E2F n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV2_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 3.400e-13 Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 1
Query: 1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGTHTAATP 135
T +VPDPDEGMP GERRYQIYLKSP GPIDVYVVSQV P
Sbjct: 213 TLEVPDPDEGMPHGERRYQIYLKSPSGPIDVYVVSQVDERIEPGP 257
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: F0W165_9STRA (Transcription factor putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W165_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 6.250e-10 Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1
Query: 1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGTHTAATP 135
T +VPDPDEGMP G+RRYQI+LKS GP+DVY++ Q+ +TP
Sbjct: 235 TLEVPDPDEGMPAGKRRYQIFLKSSDGPVDVYLIRQIPEGDLSTP 279
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: UPI001E1DE88A (transcription factor E2FA-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DE88A) HSP 1 Score: 60.8 bits (146), Expect = 1.680e-9 Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1
Query: 7 KVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGTHTAA 129
+VPDPD+GMP GERRYQI+LKS GPID +VSQ G AA
Sbjct: 148 EVPDPDDGMPYGERRYQIFLKSTAGPIDCLLVSQGGEQNAA 188
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: W4FLR3_9STRA (E2F_TDP domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLR3_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.730e-9 Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGT---------HTAATPASCM 147
T +VPDPDEGMP G RR+QI+LKS GP+DVY+VSQ T TAA+ AS +
Sbjct: 299 TLEVPDPDEGMPAGSRRFQIFLKSNEGPVDVYLVSQASTVPDEGVKKEATAASSASLL 356
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: A0A6G0WWR1_9STRA (E2F_TDP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWR1_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.350e-9 Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGT 117
T +VPDPDEGMP G RR+QI+LKS GP+DVY+VSQ T
Sbjct: 290 TLEVPDPDEGMPPGSRRFQIFLKSNEGPVDVYLVSQAST 328
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: A0A024U299_9STRA (E2F_TDP domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U299_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.360e-9 Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGT 117
T +VPDPDEGMP G RR+QI+LKS GP+DVY+VSQ T
Sbjct: 300 TLEVPDPDEGMPPGSRRFQIFLKSNEGPVDVYLVSQAST 338
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: A0A7S3WEN5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WEN5_9SPIT) HSP 1 Score: 57.8 bits (138), Expect = 2.400e-9 Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1
Query: 1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVS 105
T +VPDPDEGM QG+RRYQIYLKS GP++V++VS
Sbjct: 46 TLEVPDPDEGMEQGQRRYQIYLKSQAGPVEVFLVS 80
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: H3HB83_PHYRM (E2F_CC-MB domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB83_PHYRM) HSP 1 Score: 58.5 bits (140), Expect = 3.630e-9 Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1
Query: 1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGTHTAATPAS 141
T +VPDPDEGMP G+RR+QI+LKS GP+DVY+V Q+ A S
Sbjct: 75 TLEVPDPDEGMPAGKRRFQIFLKSTDGPVDVYLVRQMADEKEAEGTS 121
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: A0A8K1C6W8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6W8_PYTOL) HSP 1 Score: 59.7 bits (143), Expect = 3.970e-9 Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1
Query: 1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGTHTA 126
T +VPDPDEGMP G+RRYQI+LKS GP+DVY+V Q+ A
Sbjct: 213 TLEVPDPDEGMPSGKRRYQIFLKSSDGPVDVYLVRQLAEGEA 254 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14499.3250.1 >prot_E-fasciculatus_F_contig14499.3250.1 ID=prot_E-fasciculatus_F_contig14499.3250.1|Name=mRNA_E-fasciculatus_F_contig14499.3250.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=42bp MPQGERRYQIYLKSPLGPIDVYVVSQVGTHTAATPASCMVE*back to top mRNA from alignment at E-fasciculatus_F_contig14499:3103..3258- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14499.3250.1 ID=mRNA_E-fasciculatus_F_contig14499.3250.1|Name=mRNA_E-fasciculatus_F_contig14499.3250.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=156bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14499:3103..3258- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14499:3103..3258- >mRNA_E-fasciculatus_F_contig14499.3250.1 ID=mRNA_E-fasciculatus_F_contig14499.3250.1|Name=mRNA_E-fasciculatus_F_contig14499.3250.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=252bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14499:3103..3258- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |