mRNA_E-fasciculatus_F_contig14469.3236.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14469.3236.1
Unique NamemRNA_E-fasciculatus_F_contig14469.3236.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: D8LER9_ECTSI (Soluble pyridine nucleotide transhydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER9_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.550e-48
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVR 261
            RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEE RVELK+RM R
Sbjct:   80 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEELRVELKQRMPR 166          
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A6H5L0D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D3_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.860e-47
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1
Query:    1 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVRE 264
            RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYA VLAGLGVGVSLLCKDEEFMPFLSEE RVELK+RM+R+
Sbjct:  217 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYATVLAGLGVGVSLLCKDEEFMPFLSEELRVELKQRMIRD 304          
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A836CA28_9STRA (Soluble pyridine nucleotide transhydogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA28_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.000e-27
Identity = 56/87 (64.37%), Postives = 70/87 (80.46%), Query Frame = 1
Query:    1 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVR 261
            R +RP ++  G  +PF KG+VVD+TEMG I +LPNA AI+GGGVIAVEYA VLA LGVGVSLLC+D++FM FL+EE R  L+KRM +
Sbjct:   72 RAHRPKEIAPGVAIPFTKGIVVDSTEMGQIAELPNAVAILGGGVIAVEYATVLARLGVGVSLLCQDKDFMSFLTEELRDALRKRMPK 158          
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A7R9U251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U251_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.040e-20
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    1 RPNRPPKMRS-GSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVRE 264
            RP RP  +R+  + +P+  GVV+D+T MG + +LP A A+ GGGVIAVEYA VLA LGVGVSLLC +  F+PFL ++ R  L++R+ R+
Sbjct:  234 RPARPATLRNTDAPIPWTPGVVMDSTGMGNLANLPKAAAVFGGGVIAVEYATVLARLGVGVSLLCSESSFLPFLPQDVRRRLRRRLQRD 322          
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: K8YWP5_NANGC (Soluble pyridine nucleotide transhydrogenase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWP5_NANGC)

HSP 1 Score: 92.8 bits (229), Expect = 3.210e-20
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVREG 267
            RP+RP ++R G  +P+   +V+DAT++  + +LP++ A+IGGGVI+VEYA V A +G+  SLLC++E F+PFL  E +  +K  M R G
Sbjct:  228 RPSRPKELRPGVPIPYTSRLVIDATQIANLKELPDSLAVIGGGVISVEYATVFAAMGLPTSLLCREEAFLPFLPTELQTAIKADMARNG 316          
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A4D9CSA5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSA5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.420e-20
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVREG 267
            RP+RP ++R G  +P+   +V+DAT++  + +LP++ A+IGGGVI+VEYA V A +G+  SLLC++E F+PFL  E +  +K  M R G
Sbjct:  247 RPSRPKELRPGVPIPYTSRLVIDATQIANLKELPDSLAVIGGGVISVEYATVFAAMGLPTSLLCREEAFLPFLPTELQTAIKADMARNG 335          
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: H6WB84_VAULI (Soluble pyridine nucleotide transhydogenase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB84_VAULI)

HSP 1 Score: 91.7 bits (226), Expect = 1.010e-19
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVRE 264
            R +RP K+     + F+  V++D+TEM  I DLP    IIGGGVIAVEYA V A LGVGVSL+C  + F+PFL E+ +  L+ RM +E
Sbjct:   60 RAHRPNKIYKNISIEFVPNVIIDSTEMSQIVDLPRTVGIIGGGVIAVEYATVFAKLGVGVSLICPKKNFLPFLEEDIKEALRARMSKE 147          
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A7S1U0J3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0J3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.790e-16
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   37 RLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVRE 264
            R+P+    V D++ M  I++LP A AIIG GVIA+EYA VLA LGVGVSLLC ++ F+PFL+ + R  L++R+ R+
Sbjct:  129 RVPWEAKGVTDSSGMSNISELPRAVAIIGSGVIALEYATVLARLGVGVSLLCAEDGFLPFLAGDLRRRLRRRLQRD 204          
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A7S2Y1R6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1R6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.140e-15
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   37 RLPFMK--GVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVEL 243
            R+PF++  G +VDAT+   +++LPN+  IIGGGVIAVEYA V A LGVGV+LLCK++ F+PFL  E +  L
Sbjct:  214 RIPFLESGGRIVDATKASGMSELPNSILIIGGGVIAVEYATVFAELGVGVTLLCKEKAFLPFLDTELKQAL 284          
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A6U8N6N8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8N6N8_9EUGL)

HSP 1 Score: 68.2 bits (165), Expect = 2.470e-11
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   40 LPFMKGVVVDATEM-GTIT-DLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVEL 243
            +PFMK  +VD+TE+  T+   LP  C IIGGG+IAVEYA VLA +GVG+++ C  + FM  L    R  L
Sbjct:  343 VPFMKDRIVDSTEICSTLAMGLPKTCGIIGGGIIAVEYATVLASVGVGITIFCNKDRFMTMLPRILRESL 412          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LER9_ECTSI1.550e-4896.55Soluble pyridine nucleotide transhydrogenase n=1 T... [more]
A0A6H5L0D3_9PHAE4.860e-4794.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CA28_9STRA2.000e-2764.37Soluble pyridine nucleotide transhydogenase n=1 Ta... [more]
A0A7R9U251_9STRA1.040e-2052.81Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
K8YWP5_NANGC3.210e-2046.07Soluble pyridine nucleotide transhydrogenase (Frag... [more]
A0A4D9CSA5_9STRA5.420e-2046.07Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
H6WB84_VAULI1.010e-1951.14Soluble pyridine nucleotide transhydogenase n=1 Ta... [more]
A0A7S1U0J3_9STRA7.790e-1652.63Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2Y1R6_9STRA1.140e-1556.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U8N6N8_9EUGL2.470e-1150.00Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14469contigE-fasciculatus_F_contig14469:158..937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue6.7e-35
Seed eggNOG ortholog2880.D8LER9
EggNOG free text desc.glutathione-disulfide reductase activity
EggNOG OGsCOG1249@1,KOG0405@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14469.3236.1prot_E-fasciculatus_F_contig14469.3236.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14469 179..937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927932.8817067-UTR-E-fasciculatus_F_contig14469:157..1781622927932.8817067-UTR-E-fasciculatus_F_contig14469:157..178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14469 158..178 +
1695995756.5217009-UTR-E-fasciculatus_F_contig14469:157..1781695995756.5217009-UTR-E-fasciculatus_F_contig14469:157..178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14469 158..178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927932.894848-CDS-E-fasciculatus_F_contig14469:178..3581622927932.894848-CDS-E-fasciculatus_F_contig14469:178..358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14469 179..358 +
1695995756.5352004-CDS-E-fasciculatus_F_contig14469:178..3581695995756.5352004-CDS-E-fasciculatus_F_contig14469:178..358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14469 179..358 +
1622927932.910822-CDS-E-fasciculatus_F_contig14469:859..9371622927932.910822-CDS-E-fasciculatus_F_contig14469:859..937Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14469 860..937 +
1695995756.5440543-CDS-E-fasciculatus_F_contig14469:859..9371695995756.5440543-CDS-E-fasciculatus_F_contig14469:859..937Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14469 860..937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14469.3236.1

>prot_E-fasciculatus_F_contig14469.3236.1 ID=prot_E-fasciculatus_F_contig14469.3236.1|Name=mRNA_E-fasciculatus_F_contig14469.3236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=86bp
MRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLG
VGVSLLCKDEEFMPFLSEEFRVELKKRMVREGGAK*
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mRNA from alignment at E-fasciculatus_F_contig14469:158..937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14469.3236.1 ID=mRNA_E-fasciculatus_F_contig14469.3236.1|Name=mRNA_E-fasciculatus_F_contig14469.3236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14469:158..937+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCCTAACCGCCCGCCCAAGATGAGATCGGGATCGCGGCTCCCTTTCAT GAAGGGCGTTGTTGTAGACGCCACCGAGATGGGTACGATCACCGACCTCC CCAACGCGTGCGCGATCATCGGGGGCGGCGTCATAGCGGTGGAGTACGCC AATGTCCTCGCCGGGCTGGGGGTCGGAGTGTCGCTTCTTTGCAAAGACGA GGTGAAAAAATGAAACTAAGACTTGCGGGGTCGTTTGCTTTGTGCGCTGC TTGTTGTGTGGTATGTGCGCAGCAGTAGCTTGTTCAGCCGTTGACGTTAG AAAATACGGTTGAGTCAGAATGTCTTGCTTTTTTTTTCTTTCGTTTTTTT TGTTCTGTGCGCTGCTTTGTGGTATGTGCACAGCAGTAGCTTGTTCATCG TTGACCTTAGAAAGTGGTACGGTTGATAACAGAACGAACAGAATGGCCGG TGCTTGATGCGTCGGAGCGGCTTAGAGTTTCAGGGTATCAGTTGTTGGTG CATTGGATGCAAGCATGCATGGGACGCTTGACTGCCGAAACCACCGCTGC CAGTTCTTCTGCTGCTCTGTTGCTGCTGGACATGCTGCTGCTGGACATGC TGCTGCTGCTGGACATGCTGCTGCTTGACATGTTGCTGCTTGTGCTGCTG GTTGATTATTCAACCGGTGCTGTTATCGCTTCTGGCCGCTTGTTAAAAAC AGGAATTCATGCCCTTCCTTTCCGAAGAGTTTCGGGTGGAGCTCAAGAAA CGCATGGTAAGGGAGGGAGGGGCGAAATAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14469:158..937+

>mRNA_E-fasciculatus_F_contig14469.3236.1 ID=mRNA_E-fasciculatus_F_contig14469.3236.1|Name=mRNA_E-fasciculatus_F_contig14469.3236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14469:158..937+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGATCGGGATCGCGGCTCCCTTTCATGAAGGGCGTTGTTGTAGACGC
CACCGAGATGGGTACGATCACCGACCTCCCCAACGCGTGCGCGATCATCG
GGGGCGGCGTCATAGCGGTGGAGTACGCCAATGTCCTCGCCGGGCTGGGG
GTCGGAGTGTCGCTTCTTTGCAAAGACGAGATGAGATCGGGATCGCGGCT
CCCTTTCATGAAGGGCGTTGTTGTAGACGCCACCGAGATGGGTACGATCA
CCGACCTCCCCAACGCGTGCGCGATCATCGGGGGCGGCGTCATAGCGGTG
GAGTACGCCAATGTCCTCGCCGGGCTGGGGGTCGGAGTGTCGCTTCTTTG
CAAAGACGAGGAATTCATGCCCTTCCTTTCCGAAGAGTTTCGGGTGGAGC
TCAAGAAACGCATGGTAAGGGAGGGAGGGGCGAAATAAGAATTCATGCCC
TTCCTTTCCGAAGAGTTTCGGGTGGAGCTCAAGAAACGCATGGTAAGGGA
GGGAGGGGCGAAATAA
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