mRNA_E-fasciculatus_F_contig14445.3230.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14445.3230.1
Unique NamemRNA_E-fasciculatus_F_contig14445.3230.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14445.3230.1 vs. uniprot
Match: D8LGK4_ECTSI (alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK4_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 2.060e-65
Identity = 117/143 (81.82%), Postives = 123/143 (86.01%), Query Frame = 3 
Query:   33 MAMAPKAEIPLYHQNKLG-SRTVSTRRRRSAGAGGSKSKRNVGGSLCWSVLVVGILVLVAFGLGTFTGIELAQSPGRTGTSLHDGNHAPRGSFMPKLEHANGEEQVGGGAGERINRDKPAAQAPWKAQARGADDQVRPPAAPG 458
            MAMAPKAEIPLYHQNKLG SR  STRRRRS   G SKSKRNVGGSLCWSVLVVG LV VAFGLGTFTGIELAQ+PG +GTSLH+GNHAPRGSFMP LEH +G+EQVGGGAG R  R+KPA   PWKAQARG D QVRPPAAPG
Sbjct:    1 MAMAPKAEIPLYHQNKLGGSRAWSTRRRRSGAGGSSKSKRNVGGSLCWSVLVVGTLVFVAFGLGTFTGIELAQAPGGSGTSLHNGNHAPRGSFMPNLEHPSGQEQVGGGAGGRNKREKPAPLPPWKAQARGGDHQVRPPAAPG 143
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14445.3230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGK4_ECTSI2.060e-6581.82alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=287... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14445contigE-fasciculatus_F_contig14445:1324..3243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.6
Seed ortholog evalue3.7e-57
Seed eggNOG ortholog2880.D8LGK4
Preferred nameMAN1A2
KEGG koko:K01230
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006950,GO:0007275,GO:0007568,GO:0007585,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030173,GO:0030323,GO:0030324,GO:0030433,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034645,GO:0034976,GO:0035010,GO:0035295,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048286,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051603,GO:0051716,GO:0060541,GO:0070085,GO:0071704,GO:0072347,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1904381
EggNOG free text desc.mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
EggNOG OGsKOG2204@1,KOG2204@2759
EC3.2.1.113
COG Functional cat.G
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categorysignal anchor
Exons2
Model size473
Cds size441
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14445.3230.1prot_E-fasciculatus_F_contig14445.3230.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14445 1356..3243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.9833221-UTR-E-fasciculatus_F_contig14445:1323..13551622927931.9833221-UTR-E-fasciculatus_F_contig14445:1323..1355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14445 1324..1355 +
1695995756.2402022-UTR-E-fasciculatus_F_contig14445:1323..13551695995756.2402022-UTR-E-fasciculatus_F_contig14445:1323..1355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14445 1324..1355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927932.0014167-CDS-E-fasciculatus_F_contig14445:1355..16051622927932.0014167-CDS-E-fasciculatus_F_contig14445:1355..1605Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14445 1356..1605 +
1695995756.2547765-CDS-E-fasciculatus_F_contig14445:1355..16051695995756.2547765-CDS-E-fasciculatus_F_contig14445:1355..1605Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14445 1356..1605 +
1622927932.0199866-CDS-E-fasciculatus_F_contig14445:3052..32431622927932.0199866-CDS-E-fasciculatus_F_contig14445:3052..3243Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14445 3053..3243 +
1695995756.2654107-CDS-E-fasciculatus_F_contig14445:3052..32431695995756.2654107-CDS-E-fasciculatus_F_contig14445:3052..3243Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14445 3053..3243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14445.3230.1

>prot_E-fasciculatus_F_contig14445.3230.1 ID=prot_E-fasciculatus_F_contig14445.3230.1|Name=mRNA_E-fasciculatus_F_contig14445.3230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=147bp
MAMAPKAEIPLYHQNKLGSRTVSTRRRRSAGAGGSKSKRNVGGSLCWSVL
VVGILVLVAFGLGTFTGIELAQSPGRTGTSLHDGNHAPRGSFMPKLEHAN
GEEQVGGGAGERINRDKPAAQAPWKAQARGADDQVRPPAAPGGGDGG
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mRNA from alignment at E-fasciculatus_F_contig14445:1324..3243+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14445.3230.1 ID=mRNA_E-fasciculatus_F_contig14445.3230.1|Name=mRNA_E-fasciculatus_F_contig14445.3230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1920bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14445:1324..3243+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGACATAGCGCGGGGTGGAGAGCTGGAGAGACATGGCCATGGCTCCCAAG
GCCGAGATCCCGCTCTACCACCAGAACAAGCTCGGCTCGCGCACGGTATC
GACGCGGAGGAGGAGGTCTGCTGGGGCGGGAGGCTCCAAGAGCAAGAGGA
ACGTCGGAGGGAGCCTCTGCTGGTCGGTGCTGGTCGTAGGCATCCTGGTA
CTGGTGGCCTTTGGCCTCGGCACGTTCACGGGGATTGAGCTCGCCCAGTC
TCCCGGCCGGACGGGGACGTCTTTACATGACGGTGAGAGGGCTTTTGTTG
TTCGAGTAGCGTCGTCGCTCCCATTATGTGATCAAAGCAAAGAAGGGGCG
GGGCCTCTACCTACAACACGACACGGCTCGGGGAAGTCGCGCCGGTGCCG
CCGCCACTAGACACGAACGGGAAAGGGCGGTCCCACGAAAATCGTTCCAC
CCGCGTGGTGACTCCTTCTCCTCGCATCCCTGCCGGTAAAGTATGTTTCC
ACGCAGCAGAGGAGCGGTGATGGCCCACACACCACGACCGCAATTCGGGC
GGAGAGACCACCAGCAAGAAGCGGCGGTCTTTTTCATTATATATATCGTG
AACGTGGGGTTGCGCATATTTCCGAGAACTTGCTTCGGAAGGGGGAGGGA
GGCGAGGGTTTGGTGTCGAGAGCAGGTGTACAGCGTCGTGCTCACCACCT
AAGAACGACGAGCGTGGTGCTGACCCAAGCTCGCGGTAGTTCATAAGCGC
CAACGCGAGCAATGGGAGTAGGAACGTCATTCAGCACCCGCGCGAATGTG
TCGGGATGACTCGCGTTCAATCATAATGACCATTTTGTTGTGTAGACTAG
ACCTCTCACGCCTGGGAAGTAGCCATCATGAGGAACATGCCGTACAATAT
AATACTTCTAGCTCGAGTACACAGAGGGGGGGCTAGATGCTAGATGCTCG
CTGGGATACGCGCTCCTCTCTGCAGTACGCAGGTTCCATACGCATGCCAC
CTCGAGACCATTCTGTCAAAGGCCTCGACTATAATAATGTACTTACTCCG
AATTCATCAAGAGGTACCAGCCGTTGTAGGTTTGACAGACGGATGCCTAC
GAGTACTTGTAAATAGTGTATTTTGTCGATCATCCAGCCACATGGACGTG
CAGTAACATGTCGCGTTGTTTTTCAGGTTCACGTGTCCTGGGCGCCTCTG
TGGGTATACATGCAGCGCTTCAGTACATAGCGCTTGACATCGGCTTGATG
ATTTTCAGGGACGCGAACGACTGATTCACAAACAGAACAGGACTGCTGTG
TCGTTCTGCGTTTCGCTGCTCTGGTACATTCGATTTGGGAATGAGCTGTG
GAAAGGGCGTCGGAGGGGACGTCGGGAGAGGAAAGCCTTCTGCGTGATGC
CCTTCCCTCAGGTTTCATGGAGGATGGAGGAGGAAGCAAGCGTAGACGAC
ACTTGCGGCATGACGACGAAACGTTTTTTGTTGTGCCGTCGAACTTTCGG
AGGCTCAAACAGCTCTAATGGTCCAAAATGGTGAATCGGATCATGGGACT
AGAGGCCCGGGACTGCTGTGGAGATTACCCCCCCAGAGCAAGAACACCCC
CCCTCCCCGCCCCGACCTCTCTTCTCTCGAAAACTGTCGTTACCTTAAAG
AAAAGCTACATTGAACGCAATCCACGCTCGAAAGATATCGGTGGGTAATT
TTTCAACGCGAACCACCGCTGCCCGACAGGCAACCATGCACCAAGGGGCA
GCTTCATGCCGAAGCTTGAGCACGCCAATGGGGAGGAACAAGTGGGTGGG
GGTGCGGGGGAGCGGATTAACAGAGACAAACCGGCCGCGCAGGCGCCTTG
GAAGGCGCAGGCGAGGGGGGCTGATGATCAGGTGCGGCCTCCAGCGGCAC
CAGGAGGCGGTGACGGAGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14445:1324..3243+

>mRNA_E-fasciculatus_F_contig14445.3230.1 ID=mRNA_E-fasciculatus_F_contig14445.3230.1|Name=mRNA_E-fasciculatus_F_contig14445.3230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=882bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14445:1324..3243+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCATGGCTCCCAAGGCCGAGATCCCGCTCTACCACCAGAACAAGCT
CGGCTCGCGCACGGTATCGACGCGGAGGAGGAGGTCTGCTGGGGCGGGAG
GCTCCAAGAGCAAGAGGAACGTCGGAGGGAGCCTCTGCTGGTCGGTGCTG
GTCGTAGGCATCCTGGTACTGGTGGCCTTTGGCCTCGGCACGTTCACGGG
GATTGAGCTCGCCCAGTCTCCCGGCCGGACGGGGACGTCTTTACATGACG
ATGGCCATGGCTCCCAAGGCCGAGATCCCGCTCTACCACCAGAACAAGCT
CGGCTCGCGCACGGTATCGACGCGGAGGAGGAGGTCTGCTGGGGCGGGAG
GCTCCAAGAGCAAGAGGAACGTCGGAGGGAGCCTCTGCTGGTCGGTGCTG
GTCGTAGGCATCCTGGTACTGGTGGCCTTTGGCCTCGGCACGTTCACGGG
GATTGAGCTCGCCCAGTCTCCCGGCCGGACGGGGACGTCTTTACATGACG
GCAACCATGCACCAAGGGGCAGCTTCATGCCGAAGCTTGAGCACGCCAAT
GGGGAGGAACAAGTGGGTGGGGGTGCGGGGGAGCGGATTAACAGAGACAA
ACCGGCCGCGCAGGCGCCTTGGAAGGCGCAGGCGAGGGGGGCTGATGATC
AGGTGCGGCCTCCAGCGGCACCAGGAGGCGGTGACGGAGGCGCAACCATG
CACCAAGGGGCAGCTTCATGCCGAAGCTTGAGCACGCCAATGGGGAGGAA
CAAGTGGGTGGGGGTGCGGGGGAGCGGATTAACAGAGACAAACCGGCCGC
GCAGGCGCCTTGGAAGGCGCAGGCGAGGGGGGCTGATGATCAGGTGCGGC
CTCCAGCGGCACCAGGAGGCGGTGACGGAGGC
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