mRNA_E-fasciculatus_F_contig14428.3220.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14428.3220.1
Unique NamemRNA_E-fasciculatus_F_contig14428.3220.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: A0A6H5JJ53_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJ53_9PHAE)

HSP 1 Score: 602 bits (1552), Expect = 1.370e-201
Identity = 319/335 (95.22%), Postives = 323/335 (96.42%), Query Frame = 2
Query:    2 GFEAVQWLLEPEMGGKRISSFTGPLARALETRRLEFFSTNIVLAYVSRKFSRGLPGVFSGASWKMPDMHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQQGSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTEIPAKEVAFYVYMLGNMVNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALFGGTAPSLDDDGSXXXXXLPEEEEDTEGVLWFDRGGMR 1006
            GFEAVQWLLEPEMGGKRISSFTGPLARALETRRLEFFSTNIVLAYVSRKFSRGLPGVFSGASWKMPDMHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQ GSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPT+IPAKEVAFYVYMLGNMVNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVI+EEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGF+MAMFALFGG+APSLD    XXXXX      DTEGVLWFDRGG R
Sbjct:  735 GFEAVQWLLEPEMGGKRISSFTGPLARALETRRLEFFSTNIVLAYVSRKFSRGLPGVFSGASWKMPDMHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQ-GSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTKIPAKEVAFYVYMLGNMVNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIEEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFAMAMFALFGGSAPSLDXXXXXXXXXXXXXXXDTEGVLWFDRGGAR 1068          
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: D8LM43_ECTSI (Ankyrin repeat Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM43_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 3.140e-36
Identity = 109/337 (32.34%), Postives = 167/337 (49.55%), Query Frame = 2
Query:    2 GFEAVQWLLEPEMGGKRISSFTGPLARALETRRLEFFSTNIVLAYVSRKFSRGLPGVFSGASWKMPD----------MHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQQGSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCF-VVKLESPTEIPAKEVAFYVYMLGNMVNELGEARYVRKLRGQS-ELWNVVEAVLLGLVCAAFTFRMVAF---------------GSDVIQE-EAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALFGGTAPSLDDDG 928
            G   VQ +LEPE+ G +     GPLA+A+++R ++F  T +V+ Y+  KFS GLP  F    W+             M N D  + ++ +  G  PD+                         + +PGLQF   G+A +  AF+ VPA+R+A DV+ Y  ++ +F   VV L     I A +V + VY++G +  ++ E +    LR      WNVVEA  L  +  AF FRM A+               GS  + E    +LAQ F A +AP    +VLFL Q+  +LG ++   F ++ ++ RFG ++ VI LGF++A +A+FG  + SL D G
Sbjct:  527 GTTLVQEMLEPELAGLQPRDCAGPLAQAMQSRHVDFIYTPLVVDYLRLKFSAGLPNPFRETDWRREHGRVDRNLARFMVNEDESQLMVYILQGGCPDSP----------------------SWTYLPGLQFILAGVAGKTAAFFGVPAMRLALDVLVYTGVVSVFVLKVVVLRDVGRITAWDVLWLVYLVGAIWKQVHEVQEAGSLRVHLFNPWNVVEATKLASLSTAFFFRMHAWVCDGHGEYFCGQLSTGSGSVNELNEVYLAQYFQAASAPFVLGKVLFLTQVHSSLGPLMHSAFNVIGDLTRFGALMLVITLGFALAFYAMFGSMSASLPDGG 841          
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 8.960e-25
Identity = 106/349 (30.37%), Postives = 155/349 (44.41%), Query Frame = 2
Query:    2 GFEAVQWLLEPEMGGKRISSFTGPLARALETRR-LEFFSTNIVLA-YVSRKFSRGLPGVFSGASWKMPDMHN-RDTRRFVLGLPYGAAPDNVVGAVRMRL---------------CVPFELI----QQGSALRRTSLI----------------------------PGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTEIPAKEVAFYVYMLGNMVNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALFG 898
            G      + EPE+  +      GPL  AL+ R+ ++ F T  +L  ++SR+F+ GLPG        + D  N    RR +  L  G   + + G   + L               C+  +L     Q+G  L    +I                            PG QF   GL   PD +Y VPA+RM  D+  YL ML+ F  VV       +   E AF  Y+L  ++ E  E R    L   ++ WN+++ + LGLV      R      D     A +      A++APL FSR+LF AQ+    G M+Q++F M  E+V+FGVVI V++LGF+M+  ALFG
Sbjct:  629 GMTGCSAVFEPELSREDARGLPGPLRLALQERQHVQTFCTQPLLTDFLSRRFTYGLPG--------LRDTQNILGDRRELTNLARGGPGELMSGQKYLALDEEGRRKEDGRSLDRCLLLDLQDKIGQEGKLLDSRKIIDTLLSPCILLQGANCAGLWNTAVSLTFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVLFHEDGPLTPGEAAFAFYILAGIITEGQEMRRDFGLYA-ADHWNILDLLGLGLVTGGLIVRCA--DGDNSWGRALY------ALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALFG 960          
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.700e-24
Identity = 75/225 (33.33%), Postives = 116/225 (51.56%), Query Frame = 2
Query:  341 SLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTEIPAKEVAFYVYMLGNMVNELGE------ARYVRKLRGQS---------------------------------ELWNVVEAVLLGLVCAAFTFRMVA-FGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALF 895
            +++PGLQF+  G+  +P+ F++VP +R   +  +YL ML+LFC  V L+ P  IP  EV FY++  G +  E+ E       R  R  RG                                   + WN ++   +  +  AF FRM+A F S    E   F AQ F+A++APL FSR+L L+QID  LG M Q+++RM+  ++RF   I +++L F++A  A+F
Sbjct:  225 TILPGLQFSLAGILGKPETFFKVPVIRFVYESFSYLVMLVLFCSSVLLKEPDFIPRDEVIFYIFAAGLLWREVLEFLDGVPTRRHRISRGLGPEVGGRVKPGISHLGAGSNFNRMVSAFTRYVFYDTWNFMDMSTICCILVAFIFRMIARFDS----EFDLFYAQFFYALSAPLLFSRLLVLSQIDATLGPMTQVIWRMMSHMLRFSAFIAMVMLSFALAFHAVF 445          
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.970e-24
Identity = 74/225 (32.89%), Postives = 116/225 (51.56%), Query Frame = 2
Query:  341 SLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTEIPAKEVAFYVYMLGNMVNELGE------ARYVRKLRGQS---------------------------------ELWNVVEAVLLGLVCAAFTFRMVA-FGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALF 895
            +++PGLQF+  G+  +P+ F++VP +R   ++ +YL ML+LFC  V L+ P  IP  EV FY++  G +  E+ E       R  R   G                                   + WN ++   +  +  AF FRM+A F S    E   F AQ F+A++APL FSR+L L+QID  LG M Q+++RM+  ++RF   I +++L F++A  A+F
Sbjct:  857 TILPGLQFSLAGILGKPETFFKVPVIRFVYEIFSYLVMLVLFCSSVLLKEPDFIPRDEVIFYIFAAGLLWREVLEFLDGVPTRRHRTSGGPRTEEGGRVEPGISHLGAGSNFNRMVSAFTRYVFYDTWNFMDTSTICCIFVAFIFRMIARFDS----EFDLFYAQFFYALSAPLLFSRLLVLSQIDATLGPMTQVIWRMMSHMLRFSAFIAMVMLSFALAFHAVF 1077          
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.590e-23
Identity = 92/306 (30.07%), Postives = 157/306 (51.31%), Query Frame = 2
Query:   23 LLEPEMGGKRISSFTGPLARALETR-RLEFFST-NIVLAYVSRKFSRGLPGVFSGASWKMPDMHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQQ----GSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFC-FVVKLESPTEIPAKEVAFYVYMLGNMVNELGEA-----RYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALFGGT 904
            + EPE    R   + GPL   L  R ++E + T  +VL +++RKF++GLP +             RDT   +L            G +       F +  Q    G AL   +  PG +F   G  SRP ++Y+VPA+RM  D+VTY+SM+I+F  FV+  E+       E+ F +Y+ G ++ E  E       Y+R      + WN+++   L L+      RM  +G   + +E+   ++  +A++APL F+R+LF AQI  + G M+Q++F M   + +FG+++ +++LGF  + ++L+  T
Sbjct: 1001 IFEPETVISRFHGYQGPLHVVLSKREQMETYCTIPLVLDFMTRKFTKGLPSL-------------RDTEGVLLSNKGFTQTLYGGGLLAEGKVFFFGMALQRGYAGGALSSITYFPGARFIIAGFLSRPGSYYKVPALRMCLDLVTYISMMIIFGGFVILHEAGDTSDWLEIVFTMYIFGGILTEFREILEDPWEYMR------DQWNLLDVTSLTLLLGGAIQRM--YGQ--VDDES---SRALYALSAPLAFARILFFAQILPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKET 1280          
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: A0A6H5KIV5_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIV5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.430e-19
Identity = 97/315 (30.79%), Postives = 147/315 (46.67%), Query Frame = 2
Query:   23 LLEPEMGGKRISSFTGPLARALETR-RLEFFSTN-IVLAYVSRKFSRGLPGVFSGASWKMPDMHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQ----QGSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTEIPAKEVAFYVYMLGNMVNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQ------------------ILFRMLKEVVRFGVVIGVILLGFSMAMFALF 895
            L +   GG R+ S  GPL  AL+ R +LE F T  +VL Y++R F+RGLPG+ +  +        ++  +F L +   A+     G       V  EL++      S L   +L  G QF    + +RP   Y VPAVRMA D++ YL ML LF   V       +   EV F+VY+LG ++ E+ E    R+     + WN ++   L     AF  R+  +  + +   A + A       APL   R LF AQ     G M++                  I+F +  E++RF  ++ V ++GF+M+ FALF
Sbjct:  282 LFQDGTGGTRVDS--GPLEMALQARHQLELFCTQPLVLDYLNRAFTRGLPGLDASETGA------QEADQFKLLMQRNASVQVNAGDGESSGEVSRELLEVLEGSHSVLGSLTLSAGKQFILAQVVARPAFSYSVPAVRMAVDLLVYLLMLALFAKDVLWYKEGTVEVGEVVFFVYVLGAILVEITELWDGRE-EYMKDHWNALDVAALAFCGGAFLVRV--YDPESLWGRALYCA------GAPLLLFRTLFFAQFMPAQGPMIEVKEARGYPSFLRDLGLSLIIFSLAGELLRFCTILLVTMMGFAMSFFALF 579          
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: A0A6H5KCQ6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCQ6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.710e-17
Identity = 76/217 (35.02%), Postives = 115/217 (53.00%), Query Frame = 2
Query:  356 LQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCF-VVKLESPTEIPAKEVAFYVYMLGNM-------VNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAF---------------GSDVIQE-EAFFLAQLFFAMAAPLFFSRVLFLAQ--IDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALFGGTAPSLDDDG 928
            L+F   G+A +  AF+ VPA+R+A DV+ Y  ++ +F   VV L     I A +V + VY++G +       V+E+ EA  +R        WNVVEA  L  +  AF FRM A+               GS  + E    +LAQ F A +AP    +VLFL Q  +  +LG ++   F ++ ++ RFG ++ VI LGF++A +A+FG  + SL D G
Sbjct:  305 LKFILAGVAGKTAAFFGVPAMRLALDVLVYTGVVSVFVLKVVVLRDVGRITAWDVLWLVYLVGAIWKQVWMVVHEVQEAGSLRVHLFNP--WNVVEATKLASLSTAFFFRMHAWVCDGHGEYFCGQLSTGSGSVNELNEVYLAQYFQAASAPFVLGKVLFLTQARVHSSLGPLMHSAFNVIGDLTRFGALMLVITLGFALAFYAMFGSMSASLPDGG 519          
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.330e-16
Identity = 62/187 (33.16%), Postives = 106/187 (56.68%), Query Frame = 2
Query:  341 SLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTEIPAKEVAFYVYMLGNMVNELGEAR--YVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALF 895
            + +PG QF  VG+ ++P A+Y+VP +RM      +L  L L+  V       E+   E+A   +++  +V+ L + R  +V   R +   WN +E++ L L+    T R+    SDV Q  A F      A++APL FSRVLF  Q  +  GL++Q++  +  E+++F +V+G I++GF+++ +ALF
Sbjct:  469 TFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTAVALESDDGELSNTEIALTFHVMAEIVSNLLQMRAGFVEFWRDK---WNWLESLSLLLLAGGLTIRIR--NSDVHQGRALF------ALSAPLVFSRVLFFGQFLKRQGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALF 644          
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.180e-14
Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 2
Query:  599 ELWNVVEAVLLGLVCAAFTFRMVA---FGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALFGGTAPSLDDDGS 931
            + WN+++ + L  V  AF FR++    FG      + FF+AQ F A +APL F+R+L L+QID  LG M+QI++RML + +RFGV I V++ GF++A  A+FG      D D S
Sbjct: 1106 DTWNLLDTLTLSTVFLAFIFRLLGIREFGGPADPGDYFFVAQFFLAASAPLLFARLLRLSQIDSTLGPMIQIIWRMLSQTLRFGVFIVVVMAGFALAFNAVFGSCDAGSDLDES 1219          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JJ53_9PHAE1.370e-20195.22Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
D8LM43_ECTSI3.140e-3632.34Ankyrin repeat Transient receptor potential channe... [more]
D7FLB1_ECTSI8.960e-2530.37Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JTT3_9PHAE3.700e-2433.33Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LH97_ECTSI3.970e-2432.89Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5LDE6_9PHAE2.590e-2330.07Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KIV5_9PHAE2.430e-1930.79Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KCQ6_9PHAE2.710e-1735.02Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FMG5_ECTSI2.330e-1633.16Transient receptor potential channel n=1 Tax=Ectoc... [more]
A0A6H5JB40_9PHAE2.180e-1442.98Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14428contigE-fasciculatus_F_contig14428:3..3223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat Transient receptor potential channel
Ec32 orthologEc-06_009280.1
Exons6
Model size1008
Cds size990
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927930.927312-CDS-E-fasciculatus_F_contig14428:2..3181622927930.927312-CDS-E-fasciculatus_F_contig14428:2..318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14428 3..318 +
1695995755.783351-CDS-E-fasciculatus_F_contig14428:2..3181695995755.783351-CDS-E-fasciculatus_F_contig14428:2..318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14428 3..318 +
1622927930.9464905-CDS-E-fasciculatus_F_contig14428:684..8151622927930.9464905-CDS-E-fasciculatus_F_contig14428:684..815Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14428 685..815 +
1695995755.79449-CDS-E-fasciculatus_F_contig14428:684..8151695995755.79449-CDS-E-fasciculatus_F_contig14428:684..815Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14428 685..815 +
1622927930.9645278-CDS-E-fasciculatus_F_contig14428:1336..14271622927930.9645278-CDS-E-fasciculatus_F_contig14428:1336..1427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14428 1337..1427 +
1695995755.8044698-CDS-E-fasciculatus_F_contig14428:1336..14271695995755.8044698-CDS-E-fasciculatus_F_contig14428:1336..1427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14428 1337..1427 +
1622927930.979514-CDS-E-fasciculatus_F_contig14428:1858..20111622927930.979514-CDS-E-fasciculatus_F_contig14428:1858..2011Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14428 1859..2011 +
1695995755.8129895-CDS-E-fasciculatus_F_contig14428:1858..20111695995755.8129895-CDS-E-fasciculatus_F_contig14428:1858..2011Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14428 1859..2011 +
1622927930.9964423-CDS-E-fasciculatus_F_contig14428:2465..25761622927930.9964423-CDS-E-fasciculatus_F_contig14428:2465..2576Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14428 2466..2576 +
1695995755.8222566-CDS-E-fasciculatus_F_contig14428:2465..25761695995755.8222566-CDS-E-fasciculatus_F_contig14428:2465..2576Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14428 2466..2576 +
1622927931.0108669-CDS-E-fasciculatus_F_contig14428:3019..32071622927931.0108669-CDS-E-fasciculatus_F_contig14428:3019..3207Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14428 3020..3207 +
1695995755.8333778-CDS-E-fasciculatus_F_contig14428:3019..32071695995755.8333778-CDS-E-fasciculatus_F_contig14428:3019..3207Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14428 3020..3207 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.0339637-UTR-E-fasciculatus_F_contig14428:3207..32231622927931.0339637-UTR-E-fasciculatus_F_contig14428:3207..3223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14428 3208..3223 +
1695995755.8420603-UTR-E-fasciculatus_F_contig14428:3207..32231695995755.8420603-UTR-E-fasciculatus_F_contig14428:3207..3223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14428 3208..3223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14428.3220.1prot_E-fasciculatus_F_contig14428.3220.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14428 3..3207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14428.3220.1

>prot_E-fasciculatus_F_contig14428.3220.1 ID=prot_E-fasciculatus_F_contig14428.3220.1|Name=mRNA_E-fasciculatus_F_contig14428.3220.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=330bp
RVRGGAVAARARDGGQAHQFIHGAPGPGAGDPPPGVLLHQHRPRLRVAEV
FEGSSRGVQRRELEDARHAQPGHEEVRARAAVRGRARQRGRRREDEALRP
LRADPAGKRVAKDVADSGAAVQLRWPGEPAGRVLRGAGGPDGLRRCHLPV
HAYPLLLRGEAGVSHGNTRQGGGVLRLHAGKHGERAGRGTVRAETEGTVG
AVERGGGRAARTCLRSVHLPDGGLRERRDSGGGFLPGPAVLRDGGAALLL
PRAVPRADRREPRAHGPDPLPDAEGSRAVRGGNRRHSAGFLDGHVRPFRG
HRPQPGRRRVVFFQQLAGGGGGHGGGAVV*
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mRNA from alignment at E-fasciculatus_F_contig14428:3..3223+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14428.3220.1 ID=mRNA_E-fasciculatus_F_contig14428.3220.1|Name=mRNA_E-fasciculatus_F_contig14428.3220.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3221bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14428:3..3223+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGTTCGAGGCGGTGCAGTGGCTGCTCGAGCCCGAGATGGGGGGCAAGC GCATCAGTTCATTCACGGGGCCCCTGGCCCGGGCGCTGGAGACCCGCCGC CTGGAGTTCTTCTCCACCAACATCGTCCTCGCCTACGTGTCGCGGAAGTT TTCGAGGGGTCTTCCCGGGGTGTTCAGCGGCGCGAGCTGGAAGATGCCCG ACATGCACAACCGGGACACGAGGAGGTTCGTGCTCGGGCTGCCGTACGGG GCCGCGCCCGACAACGTGGTCGGCGCCGTGAGGATGAGGCTCTGCGTCCC CTTCGAGCTGATCCAGGTGCGGCGGGTTTGTGGTGGTGTGGTTCTTCTGC TGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGCGTTTGTCGGGCGGCCGGT GGGAGGAAGCACTTCTTGGCACCGATGACGTAACCAAAGTTCTTGTGTGT TTCCTTTTAACTAGAGTACGTGAGTGGGTCCAACATATAGATGGGGCGCG TAGCCCGTATCGGACGGGTGAAGTGTCTTGTCTTTGCACGGGTACATCGA ATAAGCAAATATAGTGTGTTTCGCTTTGATTGTGTTCTGTATACACCAAC CCCCTTTTTTTTTCAGTGCACGTTGTTTCACGTCTTGCTGCGTCGTGTCT GGGCATTTTTTTTGCACTGGTTGCGTCTTGAGCAGGGAAGCGCGTTGCGA AGGACGTCGCTGATTCCGGGGCTGCAGTTCAACTGCGTTGGCCTGGCGAG CCGGCCGGACGCGTTCTACGAGGTGCCGGCGGTCCGGATGGCCTGCGACG TTGTCACCTACCTGTGGGTGTCGTAGCGTTGGATGTTGCTGGTGCATGTT GTTGTTGTCGTTGTCGTTATTGTTGAGCTTGCATTGCTCTGTTTGGTTTT GTCCCTAGGAGACTACTCTGTGTTGGTGGCAGTGGTATTTGTTTTTGATA GCTTCGACGATGCGCCGCCATGTTGTTGTTGTTGTTGTTGAGTGTGTATG GTTTGGTGCGCTGCCCTGGGTGGCTCGTGCCAGGAGGGCGCTCATTGAAG CCGGCATTAGGGTGGCAGGGGTAGTGGTGATGCGGTTGTTCGAGTTTACG TCGTACGACGCTGTTAGCGCTGCGTTTGAAGTCGAAGCACGCACACCAGC CAGGGTTGTCACGTCACGCAGGAGGGCATCATGCCCCGTTTTTTTTTTCC TCCTATGGGTGTGTGCCCCGCCCTGGACGCTCGCCGGTCTGGCCTGACGG CCTTCGCGTAGTGGTTCCTTTCGAGAGTCAACTCCCTCATTAGTTTTTAC CCTCTTTTTGTGTCTTGCTGCGTGTCCGGACCAGGTCCATGCTTATCCTC TTCTGCTTCGTGGTGAAGCTGGAGTCTCCCACGGAAATACCCGCCAAGGA GGTGGCGTTTTACGTCTACATGCTGGTGAGGGGGTTCACGTTGAGAGAGG CGGGAGTGGTGCTTCCAATGCCTTGCTTCCTTTCACCGATCGAGGGTACC AAGTTAGCAATATTCACTCGAAAGATCGGTTATGTAGCGCTGTTTTTCCC CAAGTGCTGTTTTTACAACCCCCCCACCTTCGTCATTGTTTGCGATGTTC TCGCCCTCAAGCCGTCGTTTCATCGATGGGCGATAGTTGGTGCCCATTCG AAAGATGAGCGACTGCTGTAGCGCTCTCCTTTTTCACCTTCGTGTTACTA TAACCCTCCGCTCTATGCTTGCGATGCTCTTTTCTACACGCCGGTATTTC CTTCGTGAATCAATGGTGCATCATCGCCAGAAGTAATTACGCAGGTCTCT TCTGAAGAATCAATCGTCTGAATCACTTCTGCACCCCTTGCCTTGGTAAC GCACAGGGAAACATGGTGAACGAGCTGGGAGAGGCACGGTACGTGCGGAA ACTGAGGGGACAGTCGGAGCTGTGGAACGTGGTGGAGGCCGTGCTGCTCG GACTTGTCTGCGCAGCGTTCACCTTCCGGATGGTGGCCTTCGGGAGCGAC GTGATTCAGGTATGCGCGCGGTGGGGGTAGGCGCGAGAAGTGTCATGTAA AGGGGGGGGGGGGTACGCATGTTGTCGTGGGGTCATGAGTTCTTGTCAGG GGCCGCAGGAGGCTCGTGTTGGTAAATGCCCGAGGACCGCCAGACATGCG TGGCACGTGCAATCAAACTCGTCGCGACGGGCCGTATTTCGCGGGCAGTG GTTATCGTCAGTTGGGCAGACCCGGATGTTTGAAGGTGGGGTACTGAGCA GAGACTGGAATATTTTTTTTGTGTGACAAAAAGTCAACCATGAGAGGCCA TCGGCAAAACAGCGAAGACGACAACCAAGAATTTGGCATCAACAACAGCA GCAGTAGCAGCAGCAGCAGCCGCAATCACTGTGTCCACCTATAACAGTAG CATTCACTGCAACTTAAGCCTCGTGTATCGTTCTGTCTTGTCCGACTAAT TCTCCTATCGCAGGAGGAGGCTTTCTTCCTGGCCCAGCTGTTCTTCGCGA TGGCGGCGCCGCTCTTCTTCTCCCGCGTGCTGTTCCTCGCGCAGATCGAC GAGAACCTCGGGCTCATGGTCCAGGTGAGCAGCAGCACATGCTACTCGAT CTCGTACTGTAGGGCGTTCGTGTTCTTCCCAACGTTTCAATGCTGATGCT GTTGTCACGTGTGCCGTTTGGCGGCCGAGTCGTTTGTCGCCGCGTCACGA GTTGACCTTGAGTTGACGGAATTACGTGGCGGGACTGTCGTGGCTGGCGA CCCCCCGCCCCCCTCGTTGGGTAGTTTTCTTGAAGCATACTGCTCTCGTC CCTAGTTGCGCCAACACCCAAGGGGGATCCAACAGCGCACCCCCATCCAT ACCCCGCCGCCGAACGTGTTGCCGCCTCGTTTGTTAACCTCGAGGTTCGC GGTGTGCCCTCTGTCTGTAACCCGAAATTTCTTGCGCGTGTTCTTCTTTG TTTTTTCGTGCCGAACACGGCTGCGGCCTCTTTTTTTTTTTTTTTTTTTT TTTTGGCGTGGTGGCAGATCCTCTTCCGGATGCTGAAGGAAGTCGTGCGG TTCGGGGTGGTAATCGGCGTCATTCTGCTGGGTTTCTCGATGGCCATGTT CGCCCTTTTCGGGGGCACCGCCCCCAGCCTGGACGACGACGGGTCGTCTT CTTCCAACAGCTTGCCGGAGGAGGAGGAGGACACGGAGGGGGTGCTGTGG TTTGACCGCGGGGGGATGCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14428:3..3223+

>mRNA_E-fasciculatus_F_contig14428.3220.1 ID=mRNA_E-fasciculatus_F_contig14428.3220.1|Name=mRNA_E-fasciculatus_F_contig14428.3220.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1980bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14428:3..3223+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGTTCGAGGCGGTGCAGTGGCTGCTCGAGCCCGAGATGGGGGGCAAGC
GCATCAGTTCATTCACGGGGCCCCTGGCCCGGGCGCTGGAGACCCGCCGC
CTGGAGTTCTTCTCCACCAACATCGTCCTCGCCTACGTGTCGCGGAAGTT
TTCGAGGGGTCTTCCCGGGGTGTTCAGCGGCGCGAGCTGGAAGATGCCCG
ACATGCACAACCGGGACACGAGGAGGTTCGTGCTCGGGCTGCCGTACGGG
GCCGCGCCCGACAACGTGGTCGGCGCCGTGAGGATGAGGCTCTGCGTCCC
CTTCGAGCTGATCCAGAGGGTTCGAGGCGGTGCAGTGGCTGCTCGAGCCC
GAGATGGGGGGCAAGCGCATCAGTTCATTCACGGGGCCCCTGGCCCGGGC
GCTGGAGACCCGCCGCCTGGAGTTCTTCTCCACCAACATCGTCCTCGCCT
ACGTGTCGCGGAAGTTTTCGAGGGGTCTTCCCGGGGTGTTCAGCGGCGCG
AGCTGGAAGATGCCCGACATGCACAACCGGGACACGAGGAGGTTCGTGCT
CGGGCTGCCGTACGGGGCCGCGCCCGACAACGTGGTCGGCGCCGTGAGGA
TGAGGCTCTGCGTCCCCTTCGAGCTGATCCAGCAGGGAAGCGCGTTGCGA
AGGACGTCGCTGATTCCGGGGCTGCAGTTCAACTGCGTTGGCCTGGCGAG
CCGGCCGGACGCGTTCTACGAGGTGCCGGCGGTCCGGATGGCCTGCGACG
TTGTCACCTACCTCAGGGAAGCGCGTTGCGAAGGACGTCGCTGATTCCGG
GGCTGCAGTTCAACTGCGTTGGCCTGGCGAGCCGGCCGGACGCGTTCTAC
GAGGTGCCGGCGGTCCGGATGGCCTGCGACGTTGTCACCTACCTGTCCAT
GCTTATCCTCTTCTGCTTCGTGGTGAAGCTGGAGTCTCCCACGGAAATAC
CCGCCAAGGAGGTGGCGTTTTACGTCTACATGCTGGTCCATGCTTATCCT
CTTCTGCTTCGTGGTGAAGCTGGAGTCTCCCACGGAAATACCCGCCAAGG
AGGTGGCGTTTTACGTCTACATGCTGGGAAACATGGTGAACGAGCTGGGA
GAGGCACGGTACGTGCGGAAACTGAGGGGACAGTCGGAGCTGTGGAACGT
GGTGGAGGCCGTGCTGCTCGGACTTGTCTGCGCAGCGTTCACCTTCCGGA
TGGTGGCCTTCGGGAGCGACGTGATTCAGGGAAACATGGTGAACGAGCTG
GGAGAGGCACGGTACGTGCGGAAACTGAGGGGACAGTCGGAGCTGTGGAA
CGTGGTGGAGGCCGTGCTGCTCGGACTTGTCTGCGCAGCGTTCACCTTCC
GGATGGTGGCCTTCGGGAGCGACGTGATTCAGGAGGAGGCTTTCTTCCTG
GCCCAGCTGTTCTTCGCGATGGCGGCGCCGCTCTTCTTCTCCCGCGTGCT
GTTCCTCGCGCAGATCGACGAGAACCTCGGGCTCATGGTCCAGGAGGAGG
CTTTCTTCCTGGCCCAGCTGTTCTTCGCGATGGCGGCGCCGCTCTTCTTC
TCCCGCGTGCTGTTCCTCGCGCAGATCGACGAGAACCTCGGGCTCATGGT
CCAGATCCTCTTCCGGATGCTGAAGGAAGTCGTGCGGTTCGGGGTGGTAA
TCGGCGTCATTCTGCTGGGTTTCTCGATGGCCATGTTCGCCCTTTTCGGG
GGCACCGCCCCCAGCCTGGACGACGACGGGTCGTCTTCTTCCAACAGCTT
GCCGGAGGAGGAGGAGGACACGGAGGGGGTGCTGTGGTTTGAATCCTCTT
CCGGATGCTGAAGGAAGTCGTGCGGTTCGGGGTGGTAATCGGCGTCATTC
TGCTGGGTTTCTCGATGGCCATGTTCGCCCTTTTCGGGGGCACCGCCCCC
AGCCTGGACGACGACGGGTCGTCTTCTTCCAACAGCTTGCCGGAGGAGGA
GGAGGACACGGAGGGGGTGCTGTGGTTTGA
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