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Homology
BLAST of mRNA_E-fasciculatus_F_contig14408.3207.1 vs. uniprot
Match: A0A6H5KNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU8_9PHAE) HSP 1 Score: 290 bits (742), Expect = 6.020e-87 Identity = 183/203 (90.15%), Postives = 184/203 (90.64%), Query Frame = 1
Query: 1 ESSRKTTARRLRDIMKKCSQNEERFLAAVETEKARADRFEEMLEDSRRERDAECERLQHNIDSQKEQLDVKVATVKHLWEKVAAIRRVKAVGSEDLKAHLDEAVSARDSLSRLAEDQQEQIDRLRRRAKRKEEEITKTVLARLQAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESLDSAAGTTRGASAALRSQLADIK 609
ESSRK TARRLRDIMKKCSQNEERFLAAVETEKARADRFEEMLED RRERDAECERLQHNIDSQKEQLDVKVATVKHLWEKVAAIRRVKAVGSEDLKAHLDEAVSARDSLSRLAEDQQEQIDRLRRRAKRKEEEITKTVLARLQAQE XXXXXXXXXXXXXR+SLDSAAGTTRGASAALRSQLADIK
Sbjct: 2185 ESSRKMTARRLRDIMKKCSQNEERFLAAVETEKARADRFEEMLEDCRRERDAECERLQHNIDSQKEQLDVKVATVKHLWEKVAAIRRVKAVGSEDLKAHLDEAVSARDSLSRLAEDQQEQIDRLRRRAKRKEEEITKTVLARLQAQEASGSSVIDDDEMSLGDAXXXXXXXXXXXXXRDSLDSAAGTTRGASAALRSQLADIK 2387
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-07_004170.1 |
| Exons | 6 |
| Model size | 645 |
| Cds size | 645 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14408.3207.1 >prot_E-fasciculatus_F_contig14408.3207.1 ID=prot_E-fasciculatus_F_contig14408.3207.1|Name=mRNA_E-fasciculatus_F_contig14408.3207.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=215bp
ESSRKTTARRLRDIMKKCSQNEERFLAAVETEKARADRFEEMLEDSRRER
DAECERLQHNIDSQKEQLDVKVATVKHLWEKVAAIRRVKAVGSEDLKAHL
DEAVSARDSLSRLAEDQQEQIDRLRRRAKRKEEEITKTVLARLQAQEAAG
SSIIDDDEMSLGGSARGDDGTGGGGGGRESLDSAAGTTRGASAALRSQLA
DIKRTDLMCKCQRQE back to topmRNA from alignment at E-fasciculatus_F_contig14408:1..3204- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig14408.3207.1 ID=mRNA_E-fasciculatus_F_contig14408.3207.1|Name=mRNA_E-fasciculatus_F_contig14408.3207.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3204bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14408:1..3204- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGTCAAGCAGGAAGACGACGGCGAGGAGGCTCCGCGATATCATGAAGAA
GTGCTCTCAGAACGAGGAACGCTTCCTCGCGTAAGTTGATACACGTGCCC
CCCCTCCGTTCACATACACATATCACCAGCATTGCGTTGCCGCTTGTCGT
TTTGTTGGCAGCAGCGTTTGCGTGCCCATGTTTTGGCGATGGCGCCTAAG
CAAGATTTTTACCAAGTAGAACAACATCAAGCCTGATGTGCGCATGGTCT
GTTCCTGTACGAATGACTAAATGACGGGCAAGGTTTAAGAAGCTCTCCCT
CTGTATGTTGCTTCGACGCCGACAAAAAGCGCGTCAGATTCGCTGTCGCC
GTGTGCGTCTTTCTTTCACGGGGTTTGCTTCAACGAGCGTATCGTGTCGA
TGTGTTGTTTCTGGCAGTGCGTGGCTGTCTGTCTTCGACCATATTGGTTG
TAACTTATTTTTGTTTGTTTTTTTGGACATGGGCAGTGCCGTCGAGACGG
AGAAGGCCAGGGCCGATCGTTTCGAGGAGATGCTGGAGGACTCCAGGAGG
GAGAGGGACGCAGAGTGCGAGCGCCTGCAGCACAACATCGACAGCCAGAA
GGAGCAGCTAGACGTGGGTACTTTTCGTTGGTACTTTTCTCGGCACGTGC
CCGTGTATGCGCGGGTATTACGTATAAATTTATGGTTGGTATATTTTTCT
CGGCGGTACACAAGTTCTGTATCGATAGCCGGAAAAGAGCGTTGACCCGA
TCTCTCTTTAATATGTCGTCGACTCATGTTTCGGGGCGGCGGAGTGAATT
GGAGTGACTGCGGACATACCGTGGTGTGGTGTATCTGTTTTTTGACCTTT
TCAACCTAACCGTGTACCTTGCTCGCCGATTCGCTTTTCCTCCTGTCGAT
ATATACGTTATTGGGACCTACCTCCCTGTATCTCTTATATCTCTTGTATC
TCTTGTATCTCTTATATCTCTTATCTCTCTCTCTTGGTCAGGTAAAAGTG
GCCACGGTCAAGCATCTCTGGGAGAAAGTGGCGGCCATTCGTCGTGTCAA
GGCAGTCGGCAGCGAGGATCTCAAGGTAACTTGCAGTACCTTACCTTACC
GTCAGAGCCCTGCATCGTTCTTCGAAGCGCGTGTTTGTTTTGCTTGCGTC
CCCTGCTCGTGATAAGCCGAACGTCCTGCAACAACAGAGCGCTTGTTGCT
GCTGCTGCATACAATGGTTTCTGGCCTGCTGACTCTGCGTGTCCCTTGCT
TCGCCGCTGGCCGTGCGTGTGTATCTCACTCCACGCTCTCGTATTCCGTT
TACAAACATGACCATGGTGGATGGATTTTACGGTTTCACCGCCATCGACA
TGCACCCATCTGTGTGTGCAGGCTGGCCATTGGAGAGACGTCAGTCTCAT
TGGAAGCACAATATTATTCTCCCCATGTGTGTGTGTCTCTTGTTGTTGTG
TCCCACAGGCCCATCTTGACGAGGCGGTGTCTGCTCGGGACAGCCTGTCG
AGGCTCGCGGAGGACCAGCAGGAGCAGATCGACAGGCTCAGGAGGAGGGC
CAAGCGGAAGGAGGAGGAGATCACCAAGGTGAGCGAGTGAATGAGTGAAT
GGACCGAGAGGATGCGGTTCGTTTTGACGGTTGTGCATTCGGACCAATAC
GTTCACACGGGTATTCCCATGGGTATTCCCATGAAGAGTTAAGTTCGACT
TGCATGTTCCACGCCATTCCCTTCTGTTGGGGCCCATCCCTTGGTCTCGT
CTATCCTGCTGCCTTCCTAGCTCCTCTTTTTTTATCGACCCTACTTGTGT
CCACTACAGTACATGCATACATCGGTTCGTTTTATTCATTTCATGTGTGT
GTGTGCGTGTTTGTTTCTCTTTGTAGACTGTCCTTGCCAGGCTGCAGGCG
CAAGAGGCGGCTGGGTCGTCCATCATCGACGACGACGAGATGAGCCTCGG
CGGTTCCGCTAGGGGAGACGACGGCACCGGTGGCGGGGGCGGTGGCAGGG
AGTCGCTCGACAGCGCGGCGGGCACGACGAGGGGGGCCAGCGCGGCGCTG
AGGTCTCAGCTCGCCGACATCAAGGTAGGCGCGATGCCGCGAATGTACAA
GATGTGCTCTTGGCATGCTGAAATAGCGGGGTGCTATTCGTGTAAATGCC
TGCCGTAATCGGTACCACAGACCGGAGGTTTCACCCCGCCACAATGCCGG
GACGGGTCAATCTGCCGGTACAAGGGCGGGTATTTAGTATATATCTTTGG
CACGGCTATGGGTATGCACATGTGAGGGCATTTTCGGTTGATGGACGACC
CACTCCTCGACAGCATCCGTGTTCGACTGACGCCGCCCGGATCTCAACGT
TTGGCCCCGCTGTGCGTCAGCGATACAGTTGTAGCCAGACGATTTGCTCG
GTGGTTGAGCGTGCTCCCCCTGTTTTTTTAATTTCGTCTTGTGTGTGGGT
TTTCACACGACTTCGAATGAATAAGTCCGTCGCGACAGCTCCGCTGCCTC
GAATGAATTCATTCAAGAATCAGAGTTTTTGGTCATCGTCCAAGGTTATC
GTCTGGTGCACCCTCCTTGGTGGAAATACTTTGAACCGATAACCGATACA
ATGACCGGAAATACTGCGGAAAAGAGGGTGCAGATTTTCGGTTGGTACCA
GTTCGAAGACGTTCGCGGAAACGTGGCAGTAGTGGCGCGACAGAAACGCA
CGGCTCTTTCTTATCCCGGCCACCGGCCTGTTCCTTCGTCATTGGATTGG
ATCCAGGACTAGACGTTGGCAGATACATAGTGCCAGTCACGATCACCAGC
TGGGAGCGAGGCTGGCTACTTGGGTAAATGGTTGACATTGTGTTGGTCTA
CTGTTCTATGCTTTGGAGGCCGAGCCAGTGGTACTGGGGTCAACTTACCA
ACAAAGTGACTGGTGCTGCTCATGATACCGTGATGCTCATGCGGCCCTTG
TCACGATGAATGAGTTTATAGAGTGAATGTTGCACTGCCTTTCCTTCTGG
TCGTTGTTCGCCAGTTGTCTCTTCCTTTCTTTCTTTTGTCGGCCGAACGT
ATGACTGCGTTCTGTTGCCGGGTGCATCGCAATGAATAAATGGATTCAGT
GATTTAACGGCACTGCCCCTCCTGCTTGGTCGATGTCGGGTTCGTCCTAT
TTTTTTTTTCATGCCGAGCGTACGGACCTCATGTGCAAGTGCCAGCGGCA
GGAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig14408:1..3204- >mRNA_E-fasciculatus_F_contig14408.3207.1 ID=mRNA_E-fasciculatus_F_contig14408.3207.1|Name=mRNA_E-fasciculatus_F_contig14408.3207.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14408:1..3204- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGTCAAGCAGGAAGACGACGGCGAGGAGGCTCCGCGATATCATGAAGAA
GTGCTCTCAGAACGAGGAACGCTTCCTCGCGAGTCAAGCAGGAAGACGAC
GGCGAGGAGGCTCCGCGATATCATGAAGAAGTGCTCTCAGAACGAGGAAC
GCTTCCTCGCTGCCGTCGAGACGGAGAAGGCCAGGGCCGATCGTTTCGAG
GAGATGCTGGAGGACTCCAGGAGGGAGAGGGACGCAGAGTGCGAGCGCCT
GCAGCACAACATCGACAGCCAGAAGGAGCAGCTAGACTGCCGTCGAGACG
GAGAAGGCCAGGGCCGATCGTTTCGAGGAGATGCTGGAGGACTCCAGGAG
GGAGAGGGACGCAGAGTGCGAGCGCCTGCAGCACAACATCGACAGCCAGA
AGGAGCAGCTAGACGTAAAAGTGGCCACGGTCAAGCATCTCTGGGAGAAA
GTGGCGGCCATTCGTCGTGTCAAGGCAGTCGGCAGCGAGGATCTCAAGGT
AAAAGTGGCCACGGTCAAGCATCTCTGGGAGAAAGTGGCGGCCATTCGTC
GTGTCAAGGCAGTCGGCAGCGAGGATCTCAAGGCCCATCTTGACGAGGCG
GTGTCTGCTCGGGACAGCCTGTCGAGGCTCGCGGAGGACCAGCAGGAGCA
GATCGACAGGCTCAGGAGGAGGGCCAAGCGGAAGGAGGAGGAGATCACCA
AGGCCCATCTTGACGAGGCGGTGTCTGCTCGGGACAGCCTGTCGAGGCTC
GCGGAGGACCAGCAGGAGCAGATCGACAGGCTCAGGAGGAGGGCCAAGCG
GAAGGAGGAGGAGATCACCAAGACTGTCCTTGCCAGGCTGCAGGCGCAAG
AGGCGGCTGGGTCGTCCATCATCGACGACGACGAGATGAGCCTCGGCGGT
TCCGCTAGGGGAGACGACGGCACCGGTGGCGGGGGCGGTGGCAGGGAGTC
GCTCGACAGCGCGGCGGGCACGACGAGGGGGGCCAGCGCGGCGCTGAGGT
CTCAGCTCGCCGACATCAAGACTGTCCTTGCCAGGCTGCAGGCGCAAGAG
GCGGCTGGGTCGTCCATCATCGACGACGACGAGATGAGCCTCGGCGGTTC
CGCTAGGGGAGACGACGGCACCGGTGGCGGGGGCGGTGGCAGGGAGTCGC
TCGACAGCGCGGCGGGCACGACGAGGGGGGCCAGCGCGGCGCTGAGGTCT
CAGCTCGCCGACATCAAGCGTACGGACCTCATGTGCAAGTGCCAGCGGCA
GGAGCGTACGGACCTCATGTGCAAGTGCCAGCGGCAGGAG back to top
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