mRNA_E-fasciculatus_F_contig1437.3176.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1437.3176.1 vs. uniprot
Match: D8LAT5_ECTSI (Calmodulin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT5_ECTSI) HSP 1 Score: 244 bits (622), Expect = 6.140e-77 Identity = 137/215 (63.72%), Postives = 144/215 (66.98%), Query Frame = 3
Query: 465 RDEPQLPTAARACLKKFTTIAASLGLKTTREQLREDFEKVVRSNGLVDTSPGNPWLGADDTERPVIGFTYKVFRRYYLAKIQGELLEVNIRQAWEDLHHGTGMADGVNRGKLMPSGASPIGFDASGASGETPGGGDXXXXXXXXXXXXHGDSDIGGGDSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLIDPSL 1109
R +P + T TT + L++T KVVRSNGLVDTSPG+PWLGADDTERPV+ FTYKVFRRYYLAKIQGELLEVNIRQAWEDLH GT ET GGGD GDSDIGGGDSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDE GRIVYEGYRRMLIDPSL
Sbjct: 3 RSQPSISTPV------ITTRDCRIRLRSTAHVWSCLQRKVVRSNGLVDTSPGDPWLGADDTERPVVAFTYKVFRRYYLAKIQGELLEVNIRQAWEDLHQGT----------------------------ETSGGGDGGRHYRHHQQ--RGDSDIGGGDSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEVGRIVYEGYRRMLIDPSL 181
BLAST of mRNA_E-fasciculatus_F_contig1437.3176.1 vs. uniprot
Match: A0A7S2S2F4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2F4_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 4.670e-9 Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 3
Query: 945 GRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLIDPS 1106
G Y+ + +L +++T+ G+ LTDEE E++REC PDEEGRI +E YR MLID +
Sbjct: 192 GEEYITKDKLFEVMTKHGDKLTDEEAAEMIRECNPDEEGRIFFEKYRTMLIDTT 245
BLAST of mRNA_E-fasciculatus_F_contig1437.3176.1 vs. uniprot
Match: UPI0007EE2F04 (LOW QUALITY PROTEIN: calmodulin-like protein 3 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0007EE2F04) HSP 1 Score: 56.2 bits (134), Expect = 2.390e-6 Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 3
Query: 936 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLI 1097
D G YV+ AEL+ ++TR GE L+DE+VDE++R D +G++ YE + RML+
Sbjct: 59 DKDGNGYVSAAELRHVMTRLGEKLSDEKVDEMIRSANTDGDGQVNYEEFVRMLV 112
BLAST of mRNA_E-fasciculatus_F_contig1437.3176.1 vs. uniprot
Match: A0A670JEP2_PODMU (Calmodulin-A-like n=1 Tax=Podarcis muralis TaxID=64176 RepID=A0A670JEP2_PODMU) HSP 1 Score: 56.6 bits (135), Expect = 3.720e-6 Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 3
Query: 936 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLID 1100
D G Y++ AEL+ +LT GE LTDEEVDE+++E D +GR+ YE + R++++
Sbjct: 94 DKDGNGYISTAELRHVLTNLGEKLTDEEVDEMIKEADVDGDGRVNYEEFVRVMME 148
BLAST of mRNA_E-fasciculatus_F_contig1437.3176.1 vs. uniprot
Match: A0A6F9B9H4_9TELE (EF-hand domain-containing protein n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F9B9H4_9TELE) HSP 1 Score: 54.7 bits (130), Expect = 3.940e-6 Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 3
Query: 936 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLIDPSL 1109
D G Y++ AEL+ ++T GE LTDEEVDE++RE D +G++ YEG L+ +L
Sbjct: 23 DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGQFPHLLSLTL 80
BLAST of mRNA_E-fasciculatus_F_contig1437.3176.1 vs. uniprot
Match: A0A8B9C195_9AVES (EF-hand domain-containing protein n=1 Tax=Anser brachyrhynchus TaxID=132585 RepID=A0A8B9C195_9AVES) HSP 1 Score: 55.8 bits (133), Expect = 5.090e-6 Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 3
Query: 936 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLIDPSL 1109
D G Y++ AEL+ ++T GE LTDEEVDE++RE D +G++ YEG R P L
Sbjct: 27 DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGERWRRPGPPL 84
BLAST of mRNA_E-fasciculatus_F_contig1437.3176.1 vs. uniprot
Match: A0A6H5K6L7_9PHAE (Calmodulin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L7_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 5.320e-6 Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 3
Query: 936 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLI 1097
D G +++ AEL+ I+T GE LTDEEVDE++RE D +G+I YE + +M++
Sbjct: 15 DKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMM 68
BLAST of mRNA_E-fasciculatus_F_contig1437.3176.1 vs. uniprot
Match: A0A7K4SFU7_COLPI (CALMS protein (Fragment) n=1 Tax=Columbina picui TaxID=115618 RepID=A0A7K4SFU7_COLPI) HSP 1 Score: 55.5 bits (132), Expect = 6.240e-6 Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 3
Query: 936 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLID 1100
D G Y++ AEL+ ++T GE LTDEEVDE++RE + +G++ YE + RM+ +
Sbjct: 74 DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADSNNDGQVNYEEFVRMMTE 128
BLAST of mRNA_E-fasciculatus_F_contig1437.3176.1 vs. uniprot
Match: A0A091KRQ9_COLST (Calmodulin, striated muscle n=1 Tax=Colius striatus TaxID=57412 RepID=A0A091KRQ9_COLST) HSP 1 Score: 55.8 bits (133), Expect = 6.640e-6 Identity = 23/55 (41.82%), Postives = 40/55 (72.73%), Query Frame = 3
Query: 936 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLID 1100
D G Y++ AEL+ ++T+ GE LTDEEVDE+++E + +G++ YE + RM+++
Sbjct: 92 DKDGNGYISAAELRHVMTKLGEKLTDEEVDEMIKEADSNNDGQVNYEEFVRMMME 146
BLAST of mRNA_E-fasciculatus_F_contig1437.3176.1 vs. uniprot
Match: UPI00189F1B73 (calmodulin-like n=1 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI00189F1B73) HSP 1 Score: 55.8 bits (133), Expect = 7.040e-6 Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 3
Query: 936 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLI 1097
D G Y++ AEL++++T GE LTDEEVDE++RE D +GR+ YE + +M++
Sbjct: 95 DKDGCGYISAAELRQVMTNLGEKLTDEEVDEMIREADIDGDGRVNYEEFVKMMM 148 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1437.3176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1437.3176.1 >prot_E-fasciculatus_F_contig1437.3176.1 ID=prot_E-fasciculatus_F_contig1437.3176.1|Name=mRNA_E-fasciculatus_F_contig1437.3176.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=344bp MGEHADTTGRQFIDPYDDKVDDSDDEKDALSELYDDYAYDHSNEKAEEDEback to top mRNA from alignment at E-fasciculatus_F_contig1437:7985..12656+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1437.3176.1 ID=mRNA_E-fasciculatus_F_contig1437.3176.1|Name=mRNA_E-fasciculatus_F_contig1437.3176.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1437:7985..12656+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1437:7985..12656+ >mRNA_E-fasciculatus_F_contig1437.3176.1 ID=mRNA_E-fasciculatus_F_contig1437.3176.1|Name=mRNA_E-fasciculatus_F_contig1437.3176.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2064bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1437:7985..12656+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |