mRNA_E-fasciculatus_F_contig14345.3165.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14345.3165.1
Unique NamemRNA_E-fasciculatus_F_contig14345.3165.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14345.3165.1 vs. uniprot
Match: D8LPJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ0_ECTSI)

HSP 1 Score: 560 bits (1443), Expect = 7.600e-201
Identity = 270/300 (90.00%), Postives = 283/300 (94.33%), Query Frame = 1 
Query:    1 MLSDIVSLGPTSLISQYDGGCNFLYMGCLTKDVRGRWPLATTTALNCIITSTARLAELPLGPFRTKCLVQGLVRAVDTQQCDTLAWIVPRLPMEYALFTDKLSCAVIETGVVSAISYAIPLKKTKKNEAPPSFRMSVENAVRKGHVDAAKFLFTRYADRELRCAVAMAACLAGDDSLVQWCAGAMMSQFPPEATRALVYRGNIDALEWLKIHGKYSYTLMNQTVLYAALGGHVSAVDWVLDNNPGIGYDAGEVCLMVCRKGLLGILKHLIVRRGFWFHAPDCIRFAKKGSGIASWLKSRE 900
            MLSDI+SLGPTSLISQYDGG NF YMGCLTKDVRGRWPLATTTALNCII+ST RLAELP+GPFRTKCL+QGLVRAVDTQQCDTLAWIVPRLP+EYALFTDKLSCAVIETGVVSAISYAIPL +TKKNEAPP+FR+SVENAVRKGHVDAAKFLFTR+AD+ELR  V M ACL GDDSLV WCAGAMMSQFPPEATRALVYRGNIDAL WLK +GKYSYTLMNQTVLYAALGGHV AVDWVLDNNPGI YDAGEVCLMVCRKGLL ILKHL+VRRGFWFHA DCIRFAKKGSGIASWL SR+
Sbjct:    1 MLSDIISLGPTSLISQYDGGGNFFYMGCLTKDVRGRWPLATTTALNCIISSTTRLAELPIGPFRTKCLIQGLVRAVDTQQCDTLAWIVPRLPIEYALFTDKLSCAVIETGVVSAISYAIPLTRTKKNEAPPAFRVSVENAVRKGHVDAAKFLFTRFADKELRSTVVMTACLEGDDSLVHWCAGAMMSQFPPEATRALVYRGNIDALAWLKTNGKYSYTLMNQTVLYAALGGHVEAVDWVLDNNPGIRYDAGEVCLMVCRKGLLDILKHLVVRRGFWFHATDCIRFAKKGSGIASWLMSRD 300
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14345.3165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPJ0_ECTSI7.600e-20190.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14345contigE-fasciculatus_F_contig14345:1923..2849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-06_005210.1
Exons1
Model size927
Cds size927
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927924.5674825-CDS-E-fasciculatus_F_contig14345:1922..28491622927924.5674825-CDS-E-fasciculatus_F_contig14345:1922..2849Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14345 1923..2849 -
1695995753.043736-CDS-E-fasciculatus_F_contig14345:1922..28491695995753.043736-CDS-E-fasciculatus_F_contig14345:1922..2849Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14345 1923..2849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14345.3165.1prot_E-fasciculatus_F_contig14345.3165.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14345 1923..2849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14345.3165.1

>prot_E-fasciculatus_F_contig14345.3165.1 ID=prot_E-fasciculatus_F_contig14345.3165.1|Name=mRNA_E-fasciculatus_F_contig14345.3165.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=309bp
MLSDIVSLGPTSLISQYDGGCNFLYMGCLTKDVRGRWPLATTTALNCIIT
STARLAELPLGPFRTKCLVQGLVRAVDTQQCDTLAWIVPRLPMEYALFTD
KLSCAVIETGVVSAISYAIPLKKTKKNEAPPSFRMSVENAVRKGHVDAAK
FLFTRYADRELRCAVAMAACLAGDDSLVQWCAGAMMSQFPPEATRALVYR
GNIDALEWLKIHGKYSYTLMNQTVLYAALGGHVSAVDWVLDNNPGIGYDA
GEVCLMVCRKGLLGILKHLIVRRGFWFHAPDCIRFAKKGSGIASWLKSRE
LLLPLLRG*
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mRNA from alignment at E-fasciculatus_F_contig14345:1923..2849-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14345.3165.1 ID=mRNA_E-fasciculatus_F_contig14345.3165.1|Name=mRNA_E-fasciculatus_F_contig14345.3165.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=927bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14345:1923..2849- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCTCCGACATCGTCAGCCTCGGCCCGACTTCGCTCATATCGCAGTA
CGATGGTGGCTGTAATTTTTTATACATGGGGTGTCTCACAAAGGATGTTC
GTGGGAGGTGGCCGCTCGCAACAACGACTGCGTTGAATTGTATCATCACT
TCAACCGCGAGACTGGCCGAGCTTCCCCTCGGTCCGTTTCGAACGAAATG
CTTGGTACAGGGACTCGTGCGTGCCGTGGACACGCAGCAGTGTGATACGC
TGGCGTGGATCGTGCCACGGCTACCGATGGAGTACGCTCTGTTCACAGAC
AAGTTGTCTTGTGCCGTCATCGAAACGGGCGTGGTGTCTGCAATTTCCTA
CGCGATACCTCTGAAAAAGACCAAAAAGAATGAGGCGCCCCCCTCCTTCC
GGATGTCCGTGGAAAACGCCGTGCGCAAAGGCCATGTCGACGCCGCAAAG
TTTCTCTTTACGCGTTACGCCGATAGAGAACTGCGGTGCGCTGTAGCCAT
GGCGGCCTGTCTGGCGGGAGATGACTCTCTCGTTCAGTGGTGCGCCGGAG
CCATGATGAGTCAATTCCCCCCGGAGGCGACCCGGGCATTGGTGTACAGG
GGCAACATTGATGCATTGGAGTGGTTGAAAATACACGGCAAATATAGTTA
CACGTTGATGAATCAGACCGTGCTGTATGCCGCACTCGGGGGGCATGTCA
GCGCGGTCGACTGGGTCTTGGACAATAATCCTGGCATTGGGTACGACGCC
GGAGAAGTCTGCCTCATGGTGTGCAGGAAAGGACTGCTGGGTATACTCAA
GCACTTGATTGTGAGGAGAGGGTTTTGGTTCCATGCACCAGACTGCATCC
GGTTTGCGAAGAAAGGGTCGGGGATAGCTTCTTGGCTCAAGTCGCGTGAG
TTGCTGCTACCATTGCTCAGGGGCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14345:1923..2849-

>mRNA_E-fasciculatus_F_contig14345.3165.1 ID=mRNA_E-fasciculatus_F_contig14345.3165.1|Name=mRNA_E-fasciculatus_F_contig14345.3165.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14345:1923..2849- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCTCCGACATCGTCAGCCTCGGCCCGACTTCGCTCATATCGCAGTA
CGATGGTGGCTGTAATTTTTTATACATGGGGTGTCTCACAAAGGATGTTC
GTGGGAGGTGGCCGCTCGCAACAACGACTGCGTTGAATTGTATCATCACT
TCAACCGCGAGACTGGCCGAGCTTCCCCTCGGTCCGTTTCGAACGAAATG
CTTGGTACAGGGACTCGTGCGTGCCGTGGACACGCAGCAGTGTGATACGC
TGGCGTGGATCGTGCCACGGCTACCGATGGAGTACGCTCTGTTCACAGAC
AAGTTGTCTTGTGCCGTCATCGAAACGGGCGTGGTGTCTGCAATTTCCTA
CGCGATACCTCTGAAAAAGACCAAAAAGAATGAGGCGCCCCCCTCCTTCC
GGATGTCCGTGGAAAACGCCGTGCGCAAAGGCCATGTCGACGCCGCAAAG
TTTCTCTTTACGCGTTACGCCGATAGAGAACTGCGGTGCGCTGTAGCCAT
GGCGGCCTGTCTGGCGGGAGATGACTCTCTCGTTCAGTGGTGCGCCGGAG
CCATGATGAGTCAATTCCCCCCGGAGGCGACCCGGGCATTGGTGTACAGG
GGCAACATTGATGCATTGGAGTGGTTGAAAATACACGGCAAATATAGTTA
CACGTTGATGAATCAGACCGTGCTGTATGCCGCACTCGGGGGGCATGTCA
GCGCGGTCGACTGGGTCTTGGACAATAATCCTGGCATTGGGTACGACGCC
GGAGAAGTCTGCCTCATGGTGTGCAGGAAAGGACTGCTGGGTATACTCAA
GCACTTGATTGTGAGGAGAGGGTTTTGGTTCCATGCACCAGACTGCATCC
GGTTTGCGAAGAAAGGGTCGGGGATAGCTTCTTGGCTCAAGTCGCGTGAG
TTGCTGCTACCATTGCTCAGGGGCTGAATGCTCTCCGACATCGTCAGCCT
CGGCCCGACTTCGCTCATATCGCAGTACGATGGTGGCTGTAATTTTTTAT
ACATGGGGTGTCTCACAAAGGATGTTCGTGGGAGGTGGCCGCTCGCAACA
ACGACTGCGTTGAATTGTATCATCACTTCAACCGCGAGACTGGCCGAGCT
TCCCCTCGGTCCGTTTCGAACGAAATGCTTGGTACAGGGACTCGTGCGTG
CCGTGGACACGCAGCAGTGTGATACGCTGGCGTGGATCGTGCCACGGCTA
CCGATGGAGTACGCTCTGTTCACAGACAAGTTGTCTTGTGCCGTCATCGA
AACGGGCGTGGTGTCTGCAATTTCCTACGCGATACCTCTGAAAAAGACCA
AAAAGAATGAGGCGCCCCCCTCCTTCCGGATGTCCGTGGAAAACGCCGTG
CGCAAAGGCCATGTCGACGCCGCAAAGTTTCTCTTTACGCGTTACGCCGA
TAGAGAACTGCGGTGCGCTGTAGCCATGGCGGCCTGTCTGGCGGGAGATG
ACTCTCTCGTTCAGTGGTGCGCCGGAGCCATGATGAGTCAATTCCCCCCG
GAGGCGACCCGGGCATTGGTGTACAGGGGCAACATTGATGCATTGGAGTG
GTTGAAAATACACGGCAAATATAGTTACACGTTGATGAATCAGACCGTGC
TGTATGCCGCACTCGGGGGGCATGTCAGCGCGGTCGACTGGGTCTTGGAC
AATAATCCTGGCATTGGGTACGACGCCGGAGAAGTCTGCCTCATGGTGTG
CAGGAAAGGACTGCTGGGTATACTCAAGCACTTGATTGTGAGGAGAGGGT
TTTGGTTCCATGCACCAGACTGCATCCGGTTTGCGAAGAAAGGGTCGGGG
ATAGCTTCTTGGCTCAAGTCGCGTGAGTTGCTGCTACCATTGCTCAGGGG
CTGA
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