mRNA_E-fasciculatus_F_contig14327.3152.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14327.3152.1
Unique NamemRNA_E-fasciculatus_F_contig14327.3152.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14327.3152.1 vs. uniprot
Match: D7FP41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP41_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.910e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 3 
Query:  387 MDRVDQSVTRHAAASRAAYETLYTAFAAQAGGIRDSHRGVLQSLREELRLDQAFADGVKSR 569
            MDRVDQSVTRHAAASRAAYETLYTAFAAQ GGIRDSHRGVLQSLREELRLDQAFADGVKSR
Sbjct:    1 MDRVDQSVTRHAAASRAAYETLYTAFAAQPGGIRDSHRGVLQSLREELRLDQAFADGVKSR 61
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BLAST of mRNA_E-fasciculatus_F_contig14327.3152.1 vs. uniprot
Match: A0A6H5KSV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV1_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.570e-25
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 3 
Query:  387 MDRVDQSVTRHAAASRAAYETLYTAFAAQAGGIRDSHRGVLQSLREELRLDQAFADGVKSR 569
            MDRVDQSVTRHAAASRAAYETLYTAFAAQ GGIRDSHR VLQSLREELRLDQAFADGVKSR
Sbjct:    1 MDRVDQSVTRHAAASRAAYETLYTAFAAQPGGIRDSHRDVLQSLREELRLDQAFADGVKSR 61
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14327.3152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP41_ECTSI2.910e-2698.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSV1_9PHAE2.570e-2596.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14327contigE-fasciculatus_F_contig14327:2737..3305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7FP41
EggNOG free text desc.methylated histone binding
EggNOG OGsKOG1473@1,KOG1473@2759
Ec32 ortholog descriptionPHD-type zinc finger and AP2/ERF domain protein
Ec32 orthologEc-10_002390.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size183
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927922.9121907-UTR-E-fasciculatus_F_contig14327:2736..31221622927922.9121907-UTR-E-fasciculatus_F_contig14327:2736..3122Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14327 2737..3122 +
1695995752.427417-UTR-E-fasciculatus_F_contig14327:2736..31221695995752.427417-UTR-E-fasciculatus_F_contig14327:2736..3122Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14327 2737..3122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927922.922822-CDS-E-fasciculatus_F_contig14327:3122..33051622927922.922822-CDS-E-fasciculatus_F_contig14327:3122..3305Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14327 3123..3305 +
1695995752.4411588-CDS-E-fasciculatus_F_contig14327:3122..33051695995752.4411588-CDS-E-fasciculatus_F_contig14327:3122..3305Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14327 3123..3305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14327.3152.1prot_E-fasciculatus_F_contig14327.3152.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14327 3123..3305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14327.3152.1

>prot_E-fasciculatus_F_contig14327.3152.1 ID=prot_E-fasciculatus_F_contig14327.3152.1|Name=mRNA_E-fasciculatus_F_contig14327.3152.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=61bp
MDRVDQSVTRHAAASRAAYETLYTAFAAQAGGIRDSHRGVLQSLREELRL
DQAFADGVKSR
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mRNA from alignment at E-fasciculatus_F_contig14327:2737..3305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14327.3152.1 ID=mRNA_E-fasciculatus_F_contig14327.3152.1|Name=mRNA_E-fasciculatus_F_contig14327.3152.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=569bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14327:2737..3305+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACACGCGGCGAGCGGCACGTGTGTCACAGAGATCTCTGGAAGATCGAAA
AGAGAGAGACAGAGGCGAAGAGGTGGCTGGCTAACCTGCGATCGTGTTTT
GTGTGTTTGTGTTTCCTGGAGAGAGGCGGGGCGTGCTGGCGAGAGCAAAA
AAGGACGGGCGGGCAATAGGCCCGGTCAATTTTTTTCAGCATCTGCGGCA
GCGTGGCCGCGCTCGAGAGATATATTTGGTTGAACGCTCTCGGCTAGACC
GCAGCAAACTGCTTGCTTTGCCCCTGCTTCTTCGACGCTTTTGGAGATCG
AGAGAGGGCCCCAGATTTCACCAAGCCAGGGAGGGGGGGTCAAGCTCGAA
AGGGCGACCTCGGTGCAACGCACGCCGGCGGGGCGTATGGATCGGGTGGA
CCAAAGCGTAACTCGACACGCGGCCGCGTCGCGGGCGGCGTACGAAACTC
TATACACCGCGTTCGCCGCTCAGGCCGGAGGCATCAGGGACTCGCACAGG
GGCGTGCTCCAGTCTCTCAGGGAGGAGCTCCGGCTGGACCAGGCCTTCGC
GGACGGGGTCAAGTCGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14327:2737..3305+

>mRNA_E-fasciculatus_F_contig14327.3152.1 ID=mRNA_E-fasciculatus_F_contig14327.3152.1|Name=mRNA_E-fasciculatus_F_contig14327.3152.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14327:2737..3305+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATCGGGTGGACCAAAGCGTAACTCGACACGCGGCCGCGTCGCGGGC
GGCGTACGAAACTCTATACACCGCGTTCGCCGCTCAGGCCGGAGGCATCA
GGGACTCGCACAGGGGCGTGCTCCAGTCTCTCAGGGAGGAGCTCCGGCTG
GACCAGGCCTTCGCGGACGGGGTCAAGTCGAGGATGGATCGGGTGGACCA
AAGCGTAACTCGACACGCGGCCGCGTCGCGGGCGGCGTACGAAACTCTAT
ACACCGCGTTCGCCGCTCAGGCCGGAGGCATCAGGGACTCGCACAGGGGC
GTGCTCCAGTCTCTCAGGGAGGAGCTCCGGCTGGACCAGGCCTTCGCGGA
CGGGGTCAAGTCGAGG
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