mRNA_E-fasciculatus_F_contig1430.3141.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig1430.3141.1
Unique Name	mRNA_E-fasciculatus_F_contig1430.3141.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig1430.3141.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 6.150e-85
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 2

Query:    8 SSISPNMSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVGKAKASASASQDY 427
            SS  PNMSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVGKAKASASASQDY
Sbjct:   46 SSYPPNMSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVGKAKASASASQDY 185

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BLAST of mRNA_E-fasciculatus_F_contig1430.3141.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 2.990e-81
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 2

Query:   26 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVG-KAKASASASQDY 427
            MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVG KAKASASASQDY
Sbjct:    1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVGGKAKASASASQDY 135

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BLAST of mRNA_E-fasciculatus_F_contig1430.3141.1 vs. uniprot
Match: A0A7S2GRL8_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRL8_9STRA)

HSP 1 Score: 214 bits (544), Expect = 6.330e-69
Identity = 112/134 (83.58%), Postives = 123/134 (91.79%), Query Frame = 2

Query:   26 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVGKAKASASASQDY 427
            MSGKGKGGRGKKST+ S+KAGLQFPV RIGRYLK+GK+ATR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI PRHI LAV+NDEELNKLLG VTIA GGVLPNIH+VLLPKK+S GK  +SAS SQDY
Sbjct:    1 MSGKGKGGRGKKSTTSSAKAGLQFPVGRIGRYLKQGKFATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIAPRHITLAVKNDEELNKLLGGVTIAGGGVLPNIHSVLLPKKASGGKTLSSASKSQDY 134

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BLAST of mRNA_E-fasciculatus_F_contig1430.3141.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 8.620e-69
Identity = 110/119 (92.44%), Postives = 118/119 (99.16%), Query Frame = 2

Query:   26 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 382
            MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 119

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BLAST of mRNA_E-fasciculatus_F_contig1430.3141.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 5.080e-68
Identity = 110/119 (92.44%), Postives = 118/119 (99.16%), Query Frame = 2

Query:   26 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 382
            MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct:   46 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 164

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BLAST of mRNA_E-fasciculatus_F_contig1430.3141.1 vs. uniprot
Match: A0A7S2CIK1_9STRA (Histone H2A n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CIK1_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.590e-67
Identity = 118/138 (85.51%), Postives = 124/138 (89.86%), Query Frame = 2

Query:   26 MSGKGKGGRGK---KSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVGKAK-ASASASQDY 427
            MSGKGK GRGK   K TSKSSKAGLQFPVAR+GRYLK+GK+ATRVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK RI PRHIQLAVRNDEELNKLLG VTI+SGGVLPNIHAVLLPKK+  GKAK A  SASQDY
Sbjct:    1 MSGKGKSGRGKTGGKVTSKSSKAGLQFPVARVGRYLKKGKFATRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRITPRHIQLAVRNDEELNKLLGNVTISSGGVLPNIHAVLLPKKT--GKAKLAKGSASQDY 136

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BLAST of mRNA_E-fasciculatus_F_contig1430.3141.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 203 bits (517), Expect = 6.950e-65
Identity = 111/129 (86.05%), Postives = 119/129 (92.25%), Query Frame = 2

Query:   26 MSGKGKGGRG---KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS-SVGKAK 400
            M+GKGKGGRG   KKSTSKSSKAGLQFPVAR+GR+LK G+YA RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK+ S  KAK
Sbjct:    1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASAAKAK 129

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BLAST of mRNA_E-fasciculatus_F_contig1430.3141.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 7.130e-65
Identity = 103/118 (87.29%), Postives = 114/118 (96.61%), Query Frame = 2

Query:   26 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 379
            MSGKGKGGRGKK TS+S+KAGLQFPV RIGR++K+GKY++RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_E-fasciculatus_F_contig1430.3141.1 vs. uniprot
Match: A0A835ZBB6_9STRA (Histone H2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB6_9STRA)

HSP 1 Score: 201 bits (512), Expect = 4.420e-64
Identity = 110/135 (81.48%), Postives = 124/135 (91.85%), Query Frame = 2

Query:   26 MSGKGKGGRG---KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVGKAKASASASQ 421
            M+GKGKGGRG   KK TS+S+KAGLQFPVAR+GRYLK+G+YA RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHIQLAVRNDEELN+LLG VTIASGGVLPNIHAVLLPKK++   AKA+A AS+
Sbjct:    1 MAGKGKGGRGAEGKKITSQSAKAGLQFPVARMGRYLKQGRYADRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNRLLGNVTIASGGVLPNIHAVLLPKKTA---AKAAAGASK 132

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BLAST of mRNA_E-fasciculatus_F_contig1430.3141.1 vs. uniprot
Match: A4S885_OSTLU (Histone H2A n=13 Tax=Mamiellales TaxID=13792 RepID=A4S885_OSTLU)

HSP 1 Score: 201 bits (511), Expect = 5.690e-64
Identity = 106/134 (79.10%), Postives = 120/134 (89.55%), Query Frame = 2

Query:   26 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVGKAKASASASQDY 427
            MSG+GKG  GKK+TS+S+KAGLQFPV R+ RYLK GKYATRVGAGAPVYLAAV+EYL AEVLELAGNAARDNKK+R++PRHIQLA+RNDEEL+KLLG VTIA+GGVLPNIH+VLLPKKS     K S SASQ+Y
Sbjct:    1 MSGRGKGKSGKKATSRSAKAGLQFPVGRVARYLKAGKYATRVGAGAPVYLAAVMEYLCAEVLELAGNAARDNKKSRVVPRHIQLAIRNDEELSKLLGTVTIAAGGVLPNIHSVLLPKKS-----KKSGSASQEY 129

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig1430.3141.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig1430.3141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FVQ5_ECTSI	6.150e-85	98.57	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6H5KG79_9PHAE	2.990e-81	99.26	Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
A0A7S2GRL8_9STRA	6.330e-69	83.58	Histone H2A n=1 Tax=Helicotheca tamesis TaxID=3740...	[more]
D7FWI9_ECTSI	8.620e-69	92.44	Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
D7G193_ECTSI	5.080e-68	92.44	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A7S2CIK1_9STRA	1.590e-67	85.51	Histone H2A n=1 Tax=Dictyocha speculum TaxID=35687...	[more]
A0A836CG77_9STRA	6.950e-65	86.05	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
D8LLP0_ECTSI	7.130e-65	87.29	Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
A0A835ZBB6_9STRA	4.420e-64	81.48	Histone H2A n=1 Tax=Tribonema minus TaxID=303371 R...	[more]
A4S885_OSTLU	5.690e-64	79.10	Histone H2A n=13 Tax=Mamiellales TaxID=13792 RepID...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig1430	contig	E-fasciculatus_F_contig1430:5915..6688 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	498
Cds size	498
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927921.436586-CDS-E-fasciculatus_F_contig1430:5914..5986	1622927921.436586-CDS-E-fasciculatus_F_contig1430:5914..5986	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig1430 5915..5986 +
1695995751.7266688-CDS-E-fasciculatus_F_contig1430:5914..5986	1695995751.7266688-CDS-E-fasciculatus_F_contig1430:5914..5986	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig1430 5915..5986 +
1622927921.449704-CDS-E-fasciculatus_F_contig1430:6262..6688	1622927921.449704-CDS-E-fasciculatus_F_contig1430:6262..6688	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig1430 6263..6688 +
1695995751.736485-CDS-E-fasciculatus_F_contig1430:6262..6688	1695995751.736485-CDS-E-fasciculatus_F_contig1430:6262..6688	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig1430 6263..6688 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig1430.3141.1	prot_E-fasciculatus_F_contig1430.3141.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig1430 5915..6688 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig1430:5915..6688+
coding sequence from alignment at E-fasciculatus_F_contig1430:5915..6688+

protein sequence of mRNA_E-fasciculatus_F_contig1430.3141.1

>prot_E-fasciculatus_F_contig1430.3141.1 ID=prot_E-fasciculatus_F_contig1430.3141.1|Name=mRNA_E-fasciculatus_F_contig1430.3141.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=166bp
MSQFNLSKHVRKRKGRTRKEEHLQVLEGRSAVPRGAYRSLPQEGKVRDQG
GRGRSRVPGRCARIPDRRGARARWQRRPRQQEGPDHPPPHSAGCPQRRGA
QQAARRGDHRFRRRAPQHPRGFAPQEVQCRQGQGVGVCFAGLLILLPRPK
VQRMLIHHGISPRAS*

mRNA from alignment at E-fasciculatus_F_contig1430:5915..6688+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig1430.3141.1 ID=mRNA_E-fasciculatus_F_contig1430.3141.1|Name=mRNA_E-fasciculatus_F_contig1430.3141.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=774bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1430:5915..6688+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGCAGTTCAATCTCTCCAAACATGTCCGGAAAAGGAAAGGGCGGAC
GCGGAAAGAAGAGCACCTCCAAGTGAGTCTGTTTCCTGCTTGGCTTCTCT
GACACCTGCCTGTGCATACCTGCCGGTGTATTTTCATATTTGTATGGTAC
TTTCTGCAGGCCGAGGTGCCGATTCATTACAAAATTGCCATACTAAATGG
CACTAGAGTCTCCGGTACACTGTGTCAACACTAAATGCTGGTTAGGGGTA
CGCTACCCGCGTGATCGTGATCGTGATCATGCCTTCCATGTACACCACGT
GGCACGTCCGGACCTTGTGTTTATCCAACCTTTCGTATGCCGCAACAGGT
CCTCGAAGGCCGGTCTGCAGTTCCCCGTGGCGCGTATCGGTCGCTACCTC
AAGAGGGGAAAGTACGCGACCAGGGTGGGCGCGGGCGCTCCCGTGTACCT
GGCCGCTGTGCTCGAATACCTGACCGCCGAGGTGCTCGAGCTCGCTGGCA
ACGCCGCCCGCGACAACAAGAAGGCCCGGATCATCCCCCGCCACATTCAG
CTGGCTGTCCGCAACGACGAGGAGCTCAACAAGCTGCTCGGCGAGGTGAC
CATCGCTTCCGGCGGCGTGCTCCCCAACATCCACGCGGTTTTGCTCCCCA
AGAAGTCCAGTGTCGGCAAGGCCAAGGCGTCGGCGTCTGCTTCGCAGGAC
TACTAATACTCTTGCCCCGTCCAAAGGTCCAAAGGATGCTCATCCACCAC
GGCATCTCTCCGCGGGCATCGTGA

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1430:5915..6688+

>mRNA_E-fasciculatus_F_contig1430.3141.1 ID=mRNA_E-fasciculatus_F_contig1430.3141.1|Name=mRNA_E-fasciculatus_F_contig1430.3141.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=996bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1430:5915..6688+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGCAGTTCAATCTCTCCAAACATGTCCGGAAAAGGAAAGGGCGGAC
GCGGAAAGAAGAGCACCTCCAAATGTCGCAGTTCAATCTCTCCAAACATG
TCCGGAAAAGGAAAGGGCGGACGCGGAAAGAAGAGCACCTCCAAGTCCTC
GAAGGCCGGTCTGCAGTTCCCCGTGGCGCGTATCGGTCGCTACCTCAAGA
GGGGAAAGTACGCGACCAGGGTGGGCGCGGGCGCTCCCGTGTACCTGGCC
GCTGTGCTCGAATACCTGACCGCCGAGGTGCTCGAGCTCGCTGGCAACGC
CGCCCGCGACAACAAGAAGGCCCGGATCATCCCCCGCCACATTCAGCTGG
CTGTCCGCAACGACGAGGAGCTCAACAAGCTGCTCGGCGAGGTGACCATC
GCTTCCGGCGGCGTGCTCCCCAACATCCACGCGGTTTTGCTCCCCAAGAA
GTCCAGTGTCGGCAAGGCCAAGGCGTCGGCGTCTGCTTCGCAGGACTACT
AATACTCTTGCCCCGTCCAAAGGTCCAAAGGATGCTCATCCACCACGGCA
TCTCTCCGCGGGCATCGTGAGTCCTCGAAGGCCGGTCTGCAGTTCCCCGT
GGCGCGTATCGGTCGCTACCTCAAGAGGGGAAAGTACGCGACCAGGGTGG
GCGCGGGCGCTCCCGTGTACCTGGCCGCTGTGCTCGAATACCTGACCGCC
GAGGTGCTCGAGCTCGCTGGCAACGCCGCCCGCGACAACAAGAAGGCCCG
GATCATCCCCCGCCACATTCAGCTGGCTGTCCGCAACGACGAGGAGCTCA
ACAAGCTGCTCGGCGAGGTGACCATCGCTTCCGGCGGCGTGCTCCCCAAC
ATCCACGCGGTTTTGCTCCCCAAGAAGTCCAGTGTCGGCAAGGCCAAGGC
GTCGGCGTCTGCTTCGCAGGACTACTAATACTCTTGCCCCGTCCAAAGGT
CCAAAGGATGCTCATCCACCACGGCATCTCTCCGCGGGCATCGTGA