mRNA_E-fasciculatus_F_contig14281.3126.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14281.3126.1
Unique NamemRNA_E-fasciculatus_F_contig14281.3126.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14281.3126.1 vs. uniprot
Match: A0A6H5L599_9PHAE (4Fe-4S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L599_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.530e-46
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 1 
Query:    1 VNAEGGENTVLELASAAQNVLDKWEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXDLGMGVSDTIPAPKTMMETLGGSDKFEKAITAMQGAEQLREMESMTAKDQKRAEMEQRGLSEEQIAAYLG 372
            VNAEGGENTVLELASAAQNVLDKW+EE XXXXXXXXXXXXXXXXXXXXXXXXX DLGMGVSDTIPAPK+MMETLGGSDKF+KAI AMQGAEQLREMESMTAKDQKRAEMEQRGLSEEQIAAYLG
Sbjct:  139 VNAEGGENTVLELASAAQNVLDKWDEENXXXXXXXXXXXXXXXXXXXXXXXXX-DLGMGVSDTIPAPKSMMETLGGSDKFDKAINAMQGAEQLREMESMTAKDQKRAEMEQRGLSEEQIAAYLG 261
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14281.3126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L599_9PHAE2.530e-4695.164Fe-4S ferredoxin-type domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14281contigE-fasciculatus_F_contig14281:109..786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue1.3e-37
Seed eggNOG ortholog2880.D7G6I4
KEGG koko:K01265,ko:K05337,ko:K08244
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ATP-dependent protein binding
EggNOG OGsCOG0484@1,KOG0716@2759
EC2.7.9.4,3.4.11.18
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927919.3744857-CDS-E-fasciculatus_F_contig14281:108..3161622927919.3744857-CDS-E-fasciculatus_F_contig14281:108..316Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14281 109..316 -
1695995750.82236-CDS-E-fasciculatus_F_contig14281:108..3161695995750.82236-CDS-E-fasciculatus_F_contig14281:108..316Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14281 109..316 -
1622927919.3925054-CDS-E-fasciculatus_F_contig14281:613..7861622927919.3925054-CDS-E-fasciculatus_F_contig14281:613..786Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14281 614..786 -
1695995750.834744-CDS-E-fasciculatus_F_contig14281:613..7861695995750.834744-CDS-E-fasciculatus_F_contig14281:613..786Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14281 614..786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14281.3126.1prot_E-fasciculatus_F_contig14281.3126.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14281 109..786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14281.3126.1

>prot_E-fasciculatus_F_contig14281.3126.1 ID=prot_E-fasciculatus_F_contig14281.3126.1|Name=mRNA_E-fasciculatus_F_contig14281.3126.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
VNAEGGENTVLELASAAQNVLDKWEEENEEEEQERKRQEAEAAAAAFMVD
DEEEDLGMGVSDTIPAPKTMMETLGGSDKFEKAITAMQGAEQLREMESMT
AKDQKRAEMEQRGLSEEQIAAYLGEEA
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mRNA from alignment at E-fasciculatus_F_contig14281:109..786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14281.3126.1 ID=mRNA_E-fasciculatus_F_contig14281.3126.1|Name=mRNA_E-fasciculatus_F_contig14281.3126.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=678bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14281:109..786- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTAACGCGGAGGGCGGGGAGAACACCGTCCTCGAGCTCGCGAGCGCGGC
TCAAAACGTGCTGGACAAGTGGGAGGAGGAGAACGAGGAGGAAGAGCAAG
AGAGGAAGAGGCAGGAAGCAGAAGCAGCAGCTGCCGCTTTCATGGTGGAC
GACGAGGAAGAAGACCTCGGGATGTGAGATTTTAACAAGTGTTTTTTTTT
GTTTGTGCGGTGGTGCAGCGTTTGTGACTTTCGCTACGCTGACCGGTCAA
CTTGTTGGTGCCATCGTGTGATGTAGATCTTGCTTTTTTTGCGTGTGTGT
GCTGTGCAGCCTCATGACTTTCGCTACGCTGAATTGTCAACTTGCTGATG
CCATCGTGTGGTGTAGCCCCTGCCCCCCGTTTTTTGTGTGTGTAACTTTG
TCGCTTTCGCTGCGCCACGTCAACTTGTTGACGTTGACCCCATTTTTTCG
GTGTGTAACTCCTGAAACAGGGGGGTCTCTGATACGATACCGGCTCCCAA
GACCATGATGGAAACCCTCGGAGGGAGCGACAAGTTCGAGAAAGCCATCA
CGGCCATGCAGGGCGCGGAGCAGCTTAGGGAGATGGAGAGCATGACCGCC
AAGGACCAAAAGAGGGCGGAGATGGAGCAGAGGGGGCTTTCCGAAGAGCA
GATCGCCGCTTACTTGGGTGAGGAAGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14281:109..786-

>mRNA_E-fasciculatus_F_contig14281.3126.1 ID=mRNA_E-fasciculatus_F_contig14281.3126.1|Name=mRNA_E-fasciculatus_F_contig14281.3126.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14281:109..786- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTAACGCGGAGGGCGGGGAGAACACCGTCCTCGAGCTCGCGAGCGCGGC
TCAAAACGTGCTGGACAAGTGGGAGGAGGAGAACGAGGAGGAAGAGCAAG
AGAGGAAGAGGCAGGAAGCAGAAGCAGCAGCTGCCGCTTTCATGGTGGAC
GACGAGGAAGAAGACCTCGGGATGTTAACGCGGAGGGCGGGGAGAACACC
GTCCTCGAGCTCGCGAGCGCGGCTCAAAACGTGCTGGACAAGTGGGAGGA
GGAGAACGAGGAGGAAGAGCAAGAGAGGAAGAGGCAGGAAGCAGAAGCAG
CAGCTGCCGCTTTCATGGTGGACGACGAGGAAGAAGACCTCGGGATGGGG
GTCTCTGATACGATACCGGCTCCCAAGACCATGATGGAAACCCTCGGAGG
GAGCGACAAGTTCGAGAAAGCCATCACGGCCATGCAGGGCGCGGAGCAGC
TTAGGGAGATGGAGAGCATGACCGCCAAGGACCAAAAGAGGGCGGAGATG
GAGCAGAGGGGGCTTTCCGAAGAGCAGATCGCCGCTTACTTGGGTGAGGA
AGCCGGGGGTCTCTGATACGATACCGGCTCCCAAGACCATGATGGAAACC
CTCGGAGGGAGCGACAAGTTCGAGAAAGCCATCACGGCCATGCAGGGCGC
GGAGCAGCTTAGGGAGATGGAGAGCATGACCGCCAAGGACCAAAAGAGGG
CGGAGATGGAGCAGAGGGGGCTTTCCGAAGAGCAGATCGCCGCTTACTTG
GGTGAGGAAGCC
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