mRNA_E-fasciculatus_F_contig1428.3124.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1428.3124.1 vs. uniprot
Match: A0A6H5JGV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV5_9PHAE) HSP 1 Score: 215 bits (548), Expect = 1.540e-55 Identity = 189/589 (32.09%), Postives = 276/589 (46.86%), Query Frame = 3
Query: 624 EDISELIRRCKFQIQTATKHTFGEAADTRPLQQLHFLVSESLR----TTVPKLLDADDVIGIMLKGAQSPCTEVSALCNRVLCILSTDLNIAAKMANDPSVRVALVGSITRQFSDRKAAREAHQVQLREMSNWNAAPAR----YEADSELDEAPDSLACDPAEAKAER------VAADAMHCTLA--TLRNAMRASRCCTGTS-----SISPTETGLS------------FAYEQWKQQELPKVMRFLDGTHHDEGIDG---------------DRGAPAVPDWNLNQELVADLEELVFDTTAPVRGRAQEERVATETQSPRLAAAGTSLLAEISAHPQWVGLLMHRRTLLRL-ATSCRGPSAGSSAGVATQNLCAEYRRRHSLSKFSMPALTWQDPVS-----VSMAWCE---GKLETAGVGVALGPGEEDQELVQHAERLRAVVPGTAPVGILSPLHPYLNSGYVAELGTLAFSWGAMRRFVAWRKAGQLAVAASPGALPRAMLLAGLRALSGTVVLIEAFGPYGLVNPISTGLPALASQWTLDSPNGTKEKSEKDAMRLAVDFGVLYVMLRLCPYSLVPAAIICRI 2219
E + EL++RC F I TAT GEA + L +L LV S+ T +PKLLDA VIGI L+GA+SP T V+ +C R+L +LS + ++A +M+ DP++R L+G + RQ + WN A + +EA+ E + LA A A + D +H TL TL N MRASR +S + P GL+ A + ++ E+P RFL G ++ EG G G W L+++LVAD+ EL+ + R L AA S L EIS HP+ VGLL+ RR L L A S A ++ AT N+C YRR H L + S P ++++ ++ ++ W E G L+T+ E DQ V+ AER + +P +L ++ +++G LG F WGA RR++AWR+AG+ S +LP +L AGLRA G L+ GP G AS W LD+ +G++ A R + LY +LRLCPYSL+P+ ++ +
Sbjct: 125 EKVDELVQRCNFHIATAT---IGEAVNLTSLLELLDLVHHSVLAVGPTALPKLLDAG-VIGIALRGAESPNTHVAVVCYRILTVLSQNRHVARRMSRDPAIRAVLIGELRRQ-----------------VKGWNHAGSGADDDHEAEGEKQQRMGGLADGGEGATAAARPPPATIVVDPIHLTLTLETLSNVMRASRRDINSSKRRSTAEEPGAAGLNRRFGAGGVSGGRTAAGEDEEDEVPWPFRFLYGENNYEGAAGYAYGGGNEDDDTIIASVGGGISGPWPLDRKLVADIAELMLSAASARDSEGAVARGEDAELGEVLEAAAASSLLEISHHPELVGLLLRRRPLAGLVAVSQDSMMAAQTSSEATLNICNAYRRCHGLPEASEPKASYEEIITWVNKTLAQEWAESPSGDLDTS---------EADQAFVRQAER--STLPPLPYSSVL--INEIMSAGVGMALG---FPWGAARRWIAWRRAGETFSVLSTCSLPWVLLRAGLRAGLGATALVATHGP--------AGFRPQASSWILDATSGSRGTLAMSAARELSELAYLYAILRLCPYSLLPSLVVSAV 668
BLAST of mRNA_E-fasciculatus_F_contig1428.3124.1 vs. uniprot
Match: D7G608_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G608_ECTSI) HSP 1 Score: 159 bits (401), Expect = 7.560e-38 Identity = 151/491 (30.75%), Postives = 219/491 (44.60%), Query Frame = 3
Query: 894 MANDPSVRVALVGSITRQFSDRKAAREAHQVQLREMSNWNAAPAR----YEADSELDEAPDSLACDPAEAKAER------VAADAMHCTLA--TLRNAMRASRCCTGTS-----SISPTETGLSFAYE-------------QWKQQELPKVMRFLDGTHHDEGI----------DGDRGAPAVPD-----WNLNQELVADLEELVFDTTAPVRGRAQEERVATETQSPRLAAAGTSLLAEISAHPQWVGLLMHRRTLLRL-ATSCRGPSAGSSAGVATQNLCAEYRRRHSLSKFSMPALTWQDPVSVSMAWCEGKLETAGVGVALGP---GEEDQELVQHAERLRAVVPGTAPVGILSPLHPYLNSGYVAELGTLAFSWGAMRRFVAWRKAGQLAVAASPGALPRAMLLAGLRALSGTVVLIEAFGPYGLVNPISTGLPALASQWTLDSPNGTKEKSEKDAMRLAVDFGVLYVMLRLCPYSLVPAAIICRI 2219
M+ DP +R LVG + RQ + WN A + +EA+ E + D LA A A + D +H TL TL N MRASR +S + P GL++ + + ++ E+P RFL G ++ EG D D P+V W L+++LVAD+ EL+ + R L AA S L EIS H + VGLL+ RR L+ L A S A ++ AT N+C YRR H L + S P ++ + ++ W L G G E DQ V+ AER + +P + +L ++ +++G LG WGA RR++AWR+AG+ A S +LPRA+LLAGLRA GT L+ GP G A W LD+ +G++ A R + LY +LRLCPYSL+P+ ++ +
Sbjct: 1 MSRDPVIRAVLVGELRRQ-----------------VKGWNHAGSGADDDHEAEGEKQQRRDGLADGGEGATAAARPPPATIVVDPIHLTLTLETLSNVMRASRRDINSSRRRSTAEEPEAAGLNWRFGAGVGSGGRTAVAGEDEEDEVPWPFRFLYGENNYEGAAGYAHDGGNEDDDTITPSVGGVVSGPWPLDRKLVADIAELMLSAASARDSEGAVARGEDAELGEVLEAAAASSLREISHHSELVGLLLRRRPLVGLVAVSQDSMMAAQASSEATLNICNAYRRCHGLPEASEPKASYDEVIT----WVNKTLAQEWAGSPSGDLDTSEADQAFVRQAER--STLPPSPYSSVL--INMQMSTGVGMALGV---PWGAARRWIAWRRAGETFSALSRLSLPRALLLAGLRAGLGTTALVATHGP--------AGFRPQARPWILDATSGSRGTLAMSAAREVSELAYLYAILRLCPYSLLPSLVVSAV 455
BLAST of mRNA_E-fasciculatus_F_contig1428.3124.1 vs. uniprot
Match: D7G609_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G609_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 4.700e-6 Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 3
Query: 624 EDISELIRRCKFQIQTATKHTFGEAADTRPLQQLHFLVSESLR----TTVPKLLDADDVIGIMLKGAQSPCTEVSALC 845
E + EL++RC F I TAT GEA + LQ+L LV S+ T +PKLLDA VIGI L+GA+SP T VS C
Sbjct: 160 EKLDELVQRCNFHIATAT---VGEAVNLTSLQELLDLVHHSVLAVGPTALPKLLDAG-VIGIALRGAESPNTHVSKGC 233 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1428.3124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1428.3124.1 >prot_E-fasciculatus_F_contig1428.3124.1 ID=prot_E-fasciculatus_F_contig1428.3124.1|Name=mRNA_E-fasciculatus_F_contig1428.3124.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=686bp MMLSRARHRIVVSAIAYSRTPRLRSAWSGRRHVFMKTAPGFSAAAGEPSAback to top mRNA from alignment at E-fasciculatus_F_contig1428:3623..10764- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1428.3124.1 ID=mRNA_E-fasciculatus_F_contig1428.3124.1|Name=mRNA_E-fasciculatus_F_contig1428.3124.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7142bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1428:3623..10764- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1428:3623..10764- >mRNA_E-fasciculatus_F_contig1428.3124.1 ID=mRNA_E-fasciculatus_F_contig1428.3124.1|Name=mRNA_E-fasciculatus_F_contig1428.3124.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4116bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1428:3623..10764- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |