mRNA_E-fasciculatus_F_contig14239.3102.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14239.3102.1
Unique NamemRNA_E-fasciculatus_F_contig14239.3102.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14239.3102.1 vs. uniprot
Match: A0A6H5JKL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL9_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 8.390e-42
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 3 
Query:    6 GDG-GGEVSMPMLPPGLSVSIVVDLAAVSIALTEAGVNVAAVALSAAHCKVNAENVRVKTVISLGDLYVLNLLQPPPLRSSALSFAGEGGR 275
            GDG GGEVSMPMLPPGLSVSIVVDLAAVS+ALTEAGVNVAAVALSAAHCKVNAENVRVK VISLGDLYVLNLL+PPPLRS ALSFAGEGGR
Sbjct:  725 GDGVGGEVSMPMLPPGLSVSIVVDLAAVSVALTEAGVNVAAVALSAAHCKVNAENVRVKAVISLGDLYVLNLLRPPPLRSPALSFAGEGGR 815
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BLAST of mRNA_E-fasciculatus_F_contig14239.3102.1 vs. uniprot
Match: D8LP20_ECTSI (Vacuolar protein sorting-associated protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP20_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 5.150e-16
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 3 
Query:   21 EVSMPMLPPGLSVSIVVDLAAVSIALTEAGVNVAAVALSAAHCKVN 158
            EVSMPMLPPG+SVSIVVDLAAVS+ALTEAGVNVAAVALSAAHCKVN
Sbjct: 2042 EVSMPMLPPGMSVSIVVDLAAVSVALTEAGVNVAAVALSAAHCKVN 2087
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14239.3102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKL9_9PHAE8.390e-4294.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP20_ECTSI5.150e-1695.65Vacuolar protein sorting-associated protein, putat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14239contigE-fasciculatus_F_contig14239:2242..2927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue4e-11
Seed eggNOG ortholog2880.D8LP20
KEGG koko:K19525
GOsGO:0000045,GO:0006810,GO:0006914,GO:0006996,GO:0007033,GO:0007034,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016043,GO:0016192,GO:0016236,GO:0022607,GO:0030587,GO:0031154,GO:0032502,GO:0044085,GO:0044237,GO:0044248,GO:0045324,GO:0046907,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0061919,GO:0070925,GO:0071840,GO:0090702,GO:0099120,GO:1905037
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Exons2
Model size288
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14239.3102.1prot_E-fasciculatus_F_contig14239.3102.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14239 2242..2898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927914.6551535-CDS-E-fasciculatus_F_contig14239:2241..23701622927914.6551535-CDS-E-fasciculatus_F_contig14239:2241..2370Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14239 2242..2370 -
1695995749.6293771-CDS-E-fasciculatus_F_contig14239:2241..23701695995749.6293771-CDS-E-fasciculatus_F_contig14239:2241..2370Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14239 2242..2370 -
1622927914.6694078-CDS-E-fasciculatus_F_contig14239:2769..28981622927914.6694078-CDS-E-fasciculatus_F_contig14239:2769..2898Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14239 2770..2898 -
1695995749.6411068-CDS-E-fasciculatus_F_contig14239:2769..28981695995749.6411068-CDS-E-fasciculatus_F_contig14239:2769..2898Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14239 2770..2898 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927914.6788633-UTR-E-fasciculatus_F_contig14239:2898..29271622927914.6788633-UTR-E-fasciculatus_F_contig14239:2898..2927Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14239 2899..2927 -
1695995749.6503365-UTR-E-fasciculatus_F_contig14239:2898..29271695995749.6503365-UTR-E-fasciculatus_F_contig14239:2898..2927Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14239 2899..2927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14239.3102.1

>prot_E-fasciculatus_F_contig14239.3102.1 ID=prot_E-fasciculatus_F_contig14239.3102.1|Name=mRNA_E-fasciculatus_F_contig14239.3102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=86bp
MPMLPPGLSVSIVVDLAAVSIALTEAGVNVAAVALSAAHCKVNAENVRVK
TVISLGDLYVLNLLQPPPLRSSALSFAGEGGRRGGG
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mRNA from alignment at E-fasciculatus_F_contig14239:2242..2927-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14239.3102.1 ID=mRNA_E-fasciculatus_F_contig14239.3102.1|Name=mRNA_E-fasciculatus_F_contig14239.3102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=686bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14239:2242..2927- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCGGCGACGGTGGGGGTGAAGTGTCGATGCCGATGCTCCCGCCGGGC
TTGTCCGTGTCGATCGTGGTGGACCTGGCCGCCGTGAGCATCGCTCTGAC
GGAGGCCGGGGTCAACGTCGCCGCTGTGGCGCTCAGCGCCGCCCACTGCA
AAGTTAACGTGAGTGCAAACAGCAGTGGTGACGGCATAGCTTCATCAGTT
TATTCATCTGTCTTGTGTTGCTGGGGGACTAATCGAGTATTTACACTATG
CTCGGATGTCGGGGCTTTAGGTCGTCACCGCCACCGCCGCTGCTGCCTCT
GCTGCTGCTGTTGAGCAATGATGCGTCATGGAAGTATGTCGCCGCTGCTG
CTACTGCTACTGCTGTTGAGCAATGCATGTGTCATGATGCACACTGCTGT
CACCCTCATCAATTTAGAAGTAAAATTGTGCGTTGTCGTACGATAGGTAA
GATATAGTTCGTTGATCTCGCTTGTGAGCCCGCCGCTCGCTCACCCCCCT
CCTCTGCGTCTGGTGCCTGCACTCCCCTCTGTGTTTCCCGGACGAAAATG
CATTCAGGCTGAAAACGTACGGGTGAAGACTGTGATAAGCCTTGGCGATC
TGTACGTCCTGAACCTTCTGCAACCCCCGCCGCTACGATCATCAGCCCTC
TCCTTCGCGGGGGAAGGGGGACGGCGAGGAGGAGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14239:2242..2927-

>mRNA_E-fasciculatus_F_contig14239.3102.1 ID=mRNA_E-fasciculatus_F_contig14239.3102.1|Name=mRNA_E-fasciculatus_F_contig14239.3102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14239:2242..2927- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGATGCTCCCGCCGGGCTTGTCCGTGTCGATCGTGGTGGACCTGGC
CGCCGTGAGCATCGCTCTGACGGAGGCCGGGGTCAACGTCGCCGCTGTGG
CGCTCAGCGCCGCCCACTGCAAAGTTAACATGCCGATGCTCCCGCCGGGC
TTGTCCGTGTCGATCGTGGTGGACCTGGCCGCCGTGAGCATCGCTCTGAC
GGAGGCCGGGGTCAACGTCGCCGCTGTGGCGCTCAGCGCCGCCCACTGCA
AAGTTAACGCTGAAAACGTACGGGTGAAGACTGTGATAAGCCTTGGCGAT
CTGTACGTCCTGAACCTTCTGCAACCCCCGCCGCTACGATCATCAGCCCT
CTCCTTCGCGGGGGAAGGGGGACGGCGAGGAGGAGGAGCTGAAAACGTAC
GGGTGAAGACTGTGATAAGCCTTGGCGATCTGTACGTCCTGAACCTTCTG
CAACCCCCGCCGCTACGATCATCAGCCCTCTCCTTCGCGGGGGAAGGGGG
ACGGCGAGGAGGAGGA
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