mRNA_E-fasciculatus_F_contig14218.3084.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14218.3084.1
Unique NamemRNA_E-fasciculatus_F_contig14218.3084.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: D7FMQ9_ECTSI (Aquarius intron-binding protein similar to aquarius n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ9_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 3.780e-53
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 3
Query:    3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVCS 284
            GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV S
Sbjct: 1008 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLS 1101          
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A1Y1WSV3_9FUNG (Aquarius_N domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1WSV3_9FUNG)

HSP 1 Score: 116 bits (290), Expect = 3.100e-28
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 3
Query:    3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRD-PTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVCS 284
            G +V+ LPKLNLQFLT HDYLLR+FNLFRLESAYEIR D+ DA++R  P+   P R   T F GWARMA PI   SI +V+KPNLGEK PA+V +
Sbjct:  377 GNEVLPLPKLNLQFLTIHDYLLRNFNLFRLESAYEIRQDIEDAVKRLAPKLIFPER--TTEFTGWARMAIPIETFSIVDVEKPNLGEKKPAKVAA 469          
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A1Y1YIH7_9FUNG (Pre-mRNA-splicing factor n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YIH7_9FUNG)

HSP 1 Score: 116 bits (290), Expect = 3.340e-28
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 3
Query:    3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRD-PTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVCS 284
            G +V+ LPKLNLQFLT HDYLLR+FNLFRLESAYEIR D+ DA++R  P+   P R   T F GWARMA PI   SI +V+KPNLGEK PA+V +
Sbjct:  353 GNEVLPLPKLNLQFLTIHDYLLRNFNLFRLESAYEIRQDIEDAVKRLAPKLIFPER--TTEFTGWARMAIPIETFSIVDVEKPNLGEKKPAKVAA 445          
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A7S3GMN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GMN5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.550e-28
Identity = 60/92 (65.22%), Postives = 67/92 (72.83%), Query Frame = 3
Query:    3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV 278
            G +V+ALPKLNLQFL+ HDYLLR+F LFRLESAYEIR DL DAI+R  P+      GA  F GWARMA PI  VS+ EV KP LGE VP  V
Sbjct:  552 GNEVLALPKLNLQFLSIHDYLLRNFTLFRLESAYEIRDDLTDAIKRMGPKAGLR--GAVNFGGWARMAVPIVSVSVDEVTKPKLGELVPRNV 641          
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A7S0SBT5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SBT5_9CHLO)

HSP 1 Score: 114 bits (286), Expect = 8.730e-28
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 3
Query:    3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPIS--GVSITEVKKPNLGEKVPAEV 278
            G   +ALPKLNLQFLT HDYLLR+FNLFRLE+ YEIR D+ DA++R  P RD    G  +F GWARMATP++   +++TEV+KPN+GE  PA V
Sbjct:  218 GEGCLALPKLNLQFLTFHDYLLRNFNLFRLEATYEIRTDIADALQRMGPHRD-RETGEVKFSGWARMATPVAPGALAVTEVRKPNVGEAKPAAV 310          
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A7S1T1J6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T1J6_9CHLO)

HSP 1 Score: 107 bits (267), Expect = 9.470e-28
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 3
Query:    3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV 278
            G   +ALPKLNLQFLT+HDYLLR+FNLFRLE+ YEIR DL D + R   R D    G   F GW+RMA P+   +I EVKKP++G+  PA V
Sbjct:    5 GDSALALPKLNLQFLTAHDYLLRNFNLFRLEATYEIREDLSDVLARVGARTDDD-SGKVNFTGWSRMAIPLHHFTIVEVKKPDVGQNKPAAV 95          
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: L8HF13_ACACA (FHA domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HF13_ACACA)

HSP 1 Score: 114 bits (286), Expect = 1.140e-27
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 3
Query:    3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV 278
            G   +ALPKLNLQFLT +DYLLR+FNLFRLE+ Y IR D+ DA+RR NPRR P+  G T F GWARM+ PI    IT V+ P +GEK PA V
Sbjct:  448 GEHCLALPKLNLQFLTFYDYLLRNFNLFRLEATYAIRADVEDAVRRMNPRRTPS--GQTAFNGWARMSLPIKNFRITAVRPPRIGEKQPAAV 537          
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A0D2UDQ5_CAPO3 (Aquarius n=3 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UDQ5_CAPO3)

HSP 1 Score: 114 bits (285), Expect = 1.590e-27
Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 3
Query:    3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV 278
            G   +ALPKLNLQFLT HDYLLR+  LFRLESAYEIR D+ DA+RR  PRRD    G T F+GWARMA PIS  S+  V KP+L E+ P+ V
Sbjct:  519 GEGCLALPKLNLQFLTIHDYLLRNMTLFRLESAYEIREDITDAVRRLAPRRDEN--GGTLFQGWARMALPISAFSVVSVGKPSLAERHPSSV 608          
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A369SLI2_9METZ (Intron-binding protein aquarius n=2 Tax=Trichoplax TaxID=10227 RepID=A0A369SLI2_9METZ)

HSP 1 Score: 112 bits (280), Expect = 7.510e-27
Identity = 58/92 (63.04%), Postives = 65/92 (70.65%), Query Frame = 3
Query:    3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV 278
            G   +ALPKLNLQFLT HDYLLR+FNLFRLES YEIRGD+ DA+ R  P    T    T+F GWARMA PI   +I EV KPN+GE  PA V
Sbjct:  467 GADCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRGDIEDAVSRMKPWL--TEDNMTQFSGWARMAQPIVAFTIIEVIKPNIGESRPARV 556          
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A5E4QWG6_9NEOP (Aquarius_N domain-containing protein n=2 Tax=Obtectomera TaxID=104431 RepID=A0A5E4QWG6_9NEOP)

HSP 1 Score: 109 bits (273), Expect = 9.070e-27
Identity = 55/92 (59.78%), Postives = 65/92 (70.65%), Query Frame = 3
Query:    3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV 278
            G   +ALPKLNLQFLT HDYLLR+FNLFRLES YEIR D+ DA+ R  P +     G+  F GWARMA PI   ++ EV KPN+GEK P+ V
Sbjct:  114 GENCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDIEDAVYRLAPWK--AEDGSVYFGGWARMAHPIQSFAVVEVAKPNIGEKAPSRV 203          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ9_ECTSI3.780e-5398.94Aquarius intron-binding protein similar to aquariu... [more]
A0A1Y1WSV3_9FUNG3.100e-2864.21Aquarius_N domain-containing protein n=1 Tax=Basid... [more]
A0A1Y1YIH7_9FUNG3.340e-2864.21Pre-mRNA-splicing factor n=1 Tax=Basidiobolus meri... [more]
A0A7S3GMN5_9STRA4.550e-2865.22Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0SBT5_9CHLO8.730e-2860.64Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S1T1J6_9CHLO9.470e-2857.61Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
L8HF13_ACACA1.140e-2761.96FHA domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A0D2UDQ5_CAPO31.590e-2763.04Aquarius n=3 Tax=Capsaspora owczarzaki (strain ATC... [more]
A0A369SLI2_9METZ7.510e-2763.04Intron-binding protein aquarius n=2 Tax=Trichoplax... [more]
A0A5E4QWG6_9NEOP9.070e-2759.78Aquarius_N domain-containing protein n=2 Tax=Obtec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14218contigE-fasciculatus_F_contig14218:24..1239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size284
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14218.3084.1prot_E-fasciculatus_F_contig14218.3084.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14218 77..1239 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927911.7914796-UTR-E-fasciculatus_F_contig14218:23..761622927911.7914796-UTR-E-fasciculatus_F_contig14218:23..76Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14218 24..76 -
1695995748.7564557-UTR-E-fasciculatus_F_contig14218:23..761695995748.7564557-UTR-E-fasciculatus_F_contig14218:23..76Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14218 24..76 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927911.8030522-CDS-E-fasciculatus_F_contig14218:76..2371622927911.8030522-CDS-E-fasciculatus_F_contig14218:76..237Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14218 77..237 -
1695995748.7657218-CDS-E-fasciculatus_F_contig14218:76..2371695995748.7657218-CDS-E-fasciculatus_F_contig14218:76..237Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14218 77..237 -
1622927911.8126779-CDS-E-fasciculatus_F_contig14218:1169..12391622927911.8126779-CDS-E-fasciculatus_F_contig14218:1169..1239Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14218 1170..1239 -
1695995748.7744865-CDS-E-fasciculatus_F_contig14218:1169..12391695995748.7744865-CDS-E-fasciculatus_F_contig14218:1169..1239Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14218 1170..1239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14218.3084.1

>prot_E-fasciculatus_F_contig14218.3084.1 ID=prot_E-fasciculatus_F_contig14218.3084.1|Name=mRNA_E-fasciculatus_F_contig14218.3084.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=77bp
MAERSWLCPSSTCSSSQATTTCSGASTSSGSSPPTRSAETSWTPSAAPTP
GATPPGGVPPVSRAGPGWPRLSRVFP*
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mRNA from alignment at E-fasciculatus_F_contig14218:24..1239-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14218.3084.1 ID=mRNA_E-fasciculatus_F_contig14218.3084.1|Name=mRNA_E-fasciculatus_F_contig14218.3084.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14218:24..1239- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGAAAGGTCATGGCTCTGCCCAAGCTCAACCTGCAGTTCCTCACA AGCCACGACTACCTGCTCAGGTTTGTAACTTCAGCAGTCTTAGTAGGCCC TCTATATGGCGGATGCGCCGGACCGATTGTAACTACAGTAGTCTTAGTAG GCCCTCTAAATGGCGGGTATTCGCCAGACCGATTCACCCGCCCCATACCA GACACCCGCCTTATTCAATGTGTAGAACATTCACCATCACAACAATTATC TAAAGTACATGTACGCACCACGGACGGTCAAGCCTTTACGGACCGTATCG TTGAACCAAAAACACCTGGTTTTCTTCTGCGCACCCCGAAACCTGGAGGT GAACGAGTTTAGCAGCAGCTCGGTGTCGACCGGTTGCACATGAAGAAGCC CAGGCTCCGTTTCGTGATTTGTGGTAGACCTCACGCATCCACCGCCGCGG CAGCACCTAATATATATATAAATATATGCCAGGTACCATGGCCCATGGCA CCCACGACTTTGAGAAAGCCAGGTCGCGACGACTCCACACCGGCACAGGG GTATTGTGAACAAACGCCGCCGTCTCCCCTCACTCAACTGTTTTTGTTTT AACCCCGTCCCAAACGAACACACACACAACTCCGCCATCACCCGTACAGC AGTACGCGTCAGGTGAACAAACGCGCTACAGTACGCCGTATCTTTCTCCC CCCCGCCCCTCCCTTACCCGTTCTTTCGCCACCTAGACTGATTGTCGTTG GTTTCTACTGGCTTGTGGACCCTTCGGGCCCATCTAAGTTTAGCGTACCT TTTTTTGGGTAAGTTGGCCTGTGACCACGGGAATCGACCGCGTCAATCGT TAGACTAGTACGGACATTAGAAGGTACAGGGTAGTAGAGTGACCGGAACG GTGTTCAATGTGAAAACAACAACCTTTTTGAATGTGAGTATAGCAACAAC AACAACAACAACAACAACAACAAAATGACCCCGTTACAACAAACCCCTGC AGGAGCTTCAACCTCTTCCGGCTCGAGTCCGCCTACGAGATCCGCGGAGA CCTCGTGGACGCCATCCGCCGCACCAACCCCAGGCGCGACCCCACCAGGG GGGGTGCCACCCGTTTCGAGGGCTGGGCCCGGATGGCCACGCCTATCTCG GGTGTTTCCATAACGGAGGTCAAGAAGCCGAACCTCGGGGAGAAGGTCCC GGCTGAGGTGTGTAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14218:24..1239-

>mRNA_E-fasciculatus_F_contig14218.3084.1 ID=mRNA_E-fasciculatus_F_contig14218.3084.1|Name=mRNA_E-fasciculatus_F_contig14218.3084.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14218:24..1239- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGAAAGGTCATGGCTCTGCCCAAGCTCAACCTGCAGTTCCTCACA
AGCCACGACTACCTGCTCAGATGGCGGAAAGGTCATGGCTCTGCCCAAGC
TCAACCTGCAGTTCCTCACAAGCCACGACTACCTGCTCAGGAGCTTCAAC
CTCTTCCGGCTCGAGTCCGCCTACGAGATCCGCGGAGACCTCGTGGACGC
CATCCGCCGCACCAACCCCAGGCGCGACCCCACCAGGGGGGGTGCCACCC
GTTTCGAGGGCTGGGCCCGGATGGCCACGCCTATCTCGGGTGTTTCCATA
AGAGCTTCAACCTCTTCCGGCTCGAGTCCGCCTACGAGATCCGCGGAGAC
CTCGTGGACGCCATCCGCCGCACCAACCCCAGGCGCGACCCCACCAGGGG
GGGTGCCACCCGTTTCGAGGGCTGGGCCCGGATGGCCACGCCTATCTCGG
GTGTTTCCATAA
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