mRNA_E-fasciculatus_F_contig1421.3079.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1421.3079.1 vs. uniprot
Match: D8LNR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR1_ECTSI) HSP 1 Score: 254 bits (648), Expect = 7.550e-85 Identity = 131/149 (87.92%), Postives = 135/149 (90.60%), Query Frame = 1
Query: 1 MEASSYTLPAAFCFIAVQLTFQARRQATPKRPKRGKVKGGXXXXXXXXXX--SAATSQGVHLPTDVAFKTFILSALKDLHGEVGSLAYPVDVMSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLACERYL 441
MEASSYTLPAAFCFIAVQLTFQA RQATPKRPKRGKVKGG SAATSQGV+LPTDVAFKTFIL+A+KDLHGEVGSLAYPVDV+SWDAVSGEGRLRVPARSLVPIRAALS VGSCGDVPCAIDVREVSPFLAGLACERYL
Sbjct: 1 MEASSYTLPAAFCFIAVQLTFQATRQATPKRPKRGKVKGGGTTQRQQQAPQGSAATSQGVYLPTDVAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSFVGSCGDVPCAIDVREVSPFLAGLACERYL 149
BLAST of mRNA_E-fasciculatus_F_contig1421.3079.1 vs. uniprot
Match: A0A6P7YEG8_9AMPH (ribonuclease P protein subunit p14 n=2 Tax=Gymnophiona TaxID=8445 RepID=A0A6P7YEG8_9AMPH) HSP 1 Score: 70.5 bits (171), Expect = 9.610e-13 Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 1
Query: 166 QGVHLPTDVAFKTFILSALKDLHGEVGSLAYPVDVMSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 426
+GVHL FK ILSAL+DLHGEVG+ A P D++++D S LR+ R LV + +AL+L+GS + CA V + SPFL LA
Sbjct: 38 KGVHLNAP-HFKQLILSALRDLHGEVGA-ALPFDILTFDEKSFSAILRISNRGLVKLWSALTLLGSYQNHKCAFRVLQTSPFLLALA 122
BLAST of mRNA_E-fasciculatus_F_contig1421.3079.1 vs. uniprot
Match: UPI001CF96997 (ribonuclease P protein subunit p14 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF96997) HSP 1 Score: 68.6 bits (166), Expect = 5.080e-12 Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 187 DVAFKTFILSALKDLHGEVGSLAYPVDVMSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 426
D FK I+SALKDLHGEVG+ + P DV+ +D S LRV + LV + +AL+L+GS CA V +VSPFL LA
Sbjct: 42 DAHFKQLIISALKDLHGEVGA-SLPFDVLKFDEKSLSAILRVYSSGLVKLWSALTLLGSYHGKRCAFRVEQVSPFLLSLA 120
BLAST of mRNA_E-fasciculatus_F_contig1421.3079.1 vs. uniprot
Match: A0A674IF97_TERCA (Ribonuclease P/MRP subunit p14 n=1 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=A0A674IF97_TERCA) HSP 1 Score: 68.2 bits (165), Expect = 6.830e-12 Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 196 FKTFILSALKDLHGEVGSLAYPVDVMSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 426
FK ILSALK+LHGEVG+ A PVDV++++ + LRVP+ LV + +AL+L+GS + CA V + SPFL L+
Sbjct: 43 FKQLILSALKELHGEVGA-ALPVDVLTYEEKTLSAILRVPSSGLVKLWSALTLLGSYQNRKCAFRVIQTSPFLLALS 118
BLAST of mRNA_E-fasciculatus_F_contig1421.3079.1 vs. uniprot
Match: A0A3B3QVM6_9TELE (Ribonuclease P/MRP subunit p14 n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QVM6_9TELE) HSP 1 Score: 67.4 bits (163), Expect = 1.420e-11 Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 196 FKTFILSALKDLHGEVGSLAYPVDVMSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 426
FK I+SAL+DL+GEVG+ A+P DV+ +D S LRV + LV + +AL+L+GS + CA+ V +VSPFL L+
Sbjct: 45 FKQLIISALRDLYGEVGA-AFPFDVLKFDEASLTAILRVYSSGLVKLWSALTLLGSYHNESCAVRVTQVSPFLLALS 120
BLAST of mRNA_E-fasciculatus_F_contig1421.3079.1 vs. uniprot
Match: A0A452GFN8_9SAUR (Ribonuclease P/MRP subunit p14 n=4 Tax=Testudinoidea TaxID=8486 RepID=A0A452GFN8_9SAUR) HSP 1 Score: 67.4 bits (163), Expect = 1.480e-11 Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 196 FKTFILSALKDLHGEVGSLAYPVDVMSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 426
FK I+SALK+LHGEVG+ A PVDV++++ + LRVP+ LV + +AL+L+GS + CA V + SPFL L+
Sbjct: 47 FKQLIISALKELHGEVGA-ALPVDVLTYEEKTLSAILRVPSSGLVKLWSALTLLGSYQNRKCAFRVIQTSPFLLALS 122
BLAST of mRNA_E-fasciculatus_F_contig1421.3079.1 vs. uniprot
Match: A0A401P2T2_SCYTO (Uncharacterized protein n=4 Tax=Galeoidea TaxID=119195 RepID=A0A401P2T2_SCYTO) HSP 1 Score: 67.0 bits (162), Expect = 1.950e-11 Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 196 FKTFILSALKDLHGEVGSLAYPVDVMSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 426
FK I+SALKDLHGE+G+ A PVDV+ ++ + LRV + LV + +AL+L+GS + CA V +VSPFL L+
Sbjct: 44 FKQLIVSALKDLHGEIGA-ALPVDVLRFEGETLTSILRVKSNGLVKLWSALTLLGSYQNQKCAFRVTQVSPFLLALS 119
BLAST of mRNA_E-fasciculatus_F_contig1421.3079.1 vs. uniprot
Match: UPI001556DC98 (ribonuclease P protein subunit p14 n=1 Tax=Trachemys scripta elegans TaxID=31138 RepID=UPI001556DC98) HSP 1 Score: 67.0 bits (162), Expect = 2.090e-11 Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 196 FKTFILSALKDLHGEVGSLAYPVDVMSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 426
FK ++SALK+LHGEVG+ A PVDV++++ + LRVP+ LV + +AL+L+GS + CA V + SPFL L+
Sbjct: 47 FKQLVISALKELHGEVGA-ALPVDVLTYEEKTLSAILRVPSSGLVKLWSALTLLGSYQNRKCAFRVIQTSPFLLALS 122
BLAST of mRNA_E-fasciculatus_F_contig1421.3079.1 vs. uniprot
Match: A0A5A9NSM2_9TELE (Ribonuclease P protein subunit p14 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NSM2_9TELE) HSP 1 Score: 66.2 bits (160), Expect = 3.860e-11 Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 184 TDVAFKTFILSALKDLHGEVGSLAYPVDVMSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 426
+D FK I+SALK+L+GEVG+ A+P D++ +D S + LRV + LV + +AL+L+GS + CA V +VSPFL L+
Sbjct: 35 SDAQFKQLIISALKELYGEVGA-AFPFDLLKFDPSSLKAILRVYNKGLVKLWSALTLLGSYQNEACAFRVIQVSPFLLALS 114
BLAST of mRNA_E-fasciculatus_F_contig1421.3079.1 vs. uniprot
Match: A0A8J6EM83_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6EM83_ELECQ) HSP 1 Score: 65.9 bits (159), Expect = 5.560e-11 Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 190 VAFKTFILSALKDLHGEVGSLAYPVDVMSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 426
V K+ ILSALK+LHGEVG+ +YP+DV+ +D + LR+ + LV + +L++VG C+I V + SPFL LA
Sbjct: 43 VQLKSLILSALKELHGEVGA-SYPLDVLKFDGKTSSAILRIKSSGLVKLWTSLTMVGQYQGQLCSIRVLQTSPFLLALA 120 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1421.3079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1421.3079.1 >prot_E-fasciculatus_F_contig1421.3079.1 ID=prot_E-fasciculatus_F_contig1421.3079.1|Name=mRNA_E-fasciculatus_F_contig1421.3079.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=148bp MEASSYTLPAAFCFIAVQLTFQARRQATPKRPKRGKVKGGGTTQQQQQQGback to top mRNA from alignment at E-fasciculatus_F_contig1421:12156..14363+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1421.3079.1 ID=mRNA_E-fasciculatus_F_contig1421.3079.1|Name=mRNA_E-fasciculatus_F_contig1421.3079.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2208bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1421:12156..14363+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1421:12156..14363+ >mRNA_E-fasciculatus_F_contig1421.3079.1 ID=mRNA_E-fasciculatus_F_contig1421.3079.1|Name=mRNA_E-fasciculatus_F_contig1421.3079.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=888bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1421:12156..14363+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |