mRNA_E-fasciculatus_F_contig14202.3072.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14202.3072.1
Unique NamemRNA_E-fasciculatus_F_contig14202.3072.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14202.3072.1 vs. uniprot
Match: D8LRE4_ECTSI (Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE4_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 5.740e-14
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  139 DRVAELEKELTHVRSFYTRKLKEVERRAENQMRALKRGSPGTGA 270
            DRVAELEKELTHVRSFYTRKLKEVERRAENQMRALKRGSPGTGA
Sbjct:  195 DRVAELEKELTHVRSFYTRKLKEVERRAENQMRALKRGSPGTGA 238
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BLAST of mRNA_E-fasciculatus_F_contig14202.3072.1 vs. uniprot
Match: A0A6H5KNC7_9PHAE (Centrosomal protein of 162 kDa (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.870e-13
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  139 DRVAELEKELTHVRSFYTRKLKEVERRAENQMRALKRGSPGTGA 270
            DRVAELEKELTHVRSFYTRKLKEVERRAENQMRALKRGSPGT A
Sbjct:  268 DRVAELEKELTHVRSFYTRKLKEVERRAENQMRALKRGSPGTRA 311
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14202.3072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRE4_ECTSI5.740e-14100.00Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus ... [more]
A0A6H5KNC7_9PHAE7.870e-1397.73Centrosomal protein of 162 kDa (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14202contigE-fasciculatus_F_contig14202:1..2869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1230
Cds size1230
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14202.3072.1prot_E-fasciculatus_F_contig14202.3072.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14202 1..2869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.766644-CDS-E-fasciculatus_F_contig14202:0..2551622927910.766644-CDS-E-fasciculatus_F_contig14202:0..255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14202 1..255 -
1695995748.1223948-CDS-E-fasciculatus_F_contig14202:0..2551695995748.1223948-CDS-E-fasciculatus_F_contig14202:0..255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14202 1..255 -
1622927910.7772303-CDS-E-fasciculatus_F_contig14202:1474..23111622927910.7772303-CDS-E-fasciculatus_F_contig14202:1474..2311Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14202 1475..2311 -
1695995748.1325097-CDS-E-fasciculatus_F_contig14202:1474..23111695995748.1325097-CDS-E-fasciculatus_F_contig14202:1474..2311Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14202 1475..2311 -
1622927910.7871807-CDS-E-fasciculatus_F_contig14202:2731..28691622927910.7871807-CDS-E-fasciculatus_F_contig14202:2731..2869Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14202 2732..2869 -
1695995748.1424916-CDS-E-fasciculatus_F_contig14202:2731..28691695995748.1424916-CDS-E-fasciculatus_F_contig14202:2731..2869Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14202 2732..2869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14202.3072.1

>prot_E-fasciculatus_F_contig14202.3072.1 ID=prot_E-fasciculatus_F_contig14202.3072.1|Name=mRNA_E-fasciculatus_F_contig14202.3072.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=410bp
GGGVFGRPGVAAGGGSGGRSSQSRQAEGGGEEEKEEEEQRQQQQQQDRVA
ELEKELTHVRSFYTRKLKEVERRAENQMRALKRGSPGTGAGGSRHRGRDA
DGGGDEGEGEGGGDPFRREQQQHHHHQVPAAVGLAAMQQGREGGRGGGSG
GGHQGDKVDDDDDDDDSRPLTGRGDVGGGGGGGGDRRLDRVREAEALERQ
QQQQQQQPRRRPQEEELERRRQGVSRRQRDGNDDDDAPRRSGDGQEWAQQ
QQRRRRRPQSESEDSSSCRSGGGRGMLLLSSSTSSVPGGALRAERARHER
ELERERAAAEARVGALKLRLVQTAQALGKAQAREQAEAWGRGKAGAAAAM
ASGGGGGGDDSNPSARGGEGGASSSSRAGGGGGGEDGVRLRERGRVLELE
AAVAKERQAA
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mRNA from alignment at E-fasciculatus_F_contig14202:1..2869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14202.3072.1 ID=mRNA_E-fasciculatus_F_contig14202.3072.1|Name=mRNA_E-fasciculatus_F_contig14202.3072.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2869bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14202:1..2869- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGTGGAGTTTTCGGGAGACCCGGCGTTGCGGCCGGTGGCGGAAGCGG
CGGCCGGAGTTCTCAGAGTCGGCAAGCGGAGGGGGGCGGGGAGGAGGAGA
AAGAGGAGGAGGAACAGCGGCAGCAGCAGCAGCAGCAGGTAGGTTATTGC
TCAGCGGCAGTGGCATTGGTCTGTCGAGGTAGGTGGCTTCTTGCATGCTG
CTGTTCTTGCGTCGTCATCCGACCCTTGGTGAACAGGCGCAACGAATGCG
CCCGATGGTTCTCCTGGGATACAAAGCGACTTGGCCCTAGTGGTGTGCCT
GTCCGATGCGTGCTTTGCGACCCCACCCTCTCTCTCCGCGCTCCTCCCCA
ATGGTAACACTGGTAAGCACGGCCCGACCCTATTCAGACTCACCCCACGG
GCGAAGCATCTTGAGTCAGCAATGACATCGGGAGGAGATGCCTTGTTTTG
GATCAACCTAGCCCTCATCAGCCCCTCACCCGTACCTCGTCTTCCTTACC
TCTTCTCTTGGTAAAATAACCATCAATACATGACGTTTTGTTGTTGTTTG
TTTCCCAGGACCGCGTCGCCGAGCTGGAGAAAGAGCTGACCCACGTGCGC
TCGTTCTACACGCGCAAGCTCAAGGAGGTGGAGCGTAGGGCGGAGAACCA
GATGCGTGCGCTCAAGCGAGGGAGCCCCGGCACCGGCGCCGGCGGCAGCA
GGCATCGCGGTCGAGATGCCGACGGCGGGGGTGATGAGGGGGAGGGGGAG
GGGGGAGGAGACCCGTTCCGGCGAGAGCAACAGCAGCACCACCACCATCA
GGTGCCAGCGGCGGTCGGTTTAGCAGCGATGCAACAGGGAAGAGAAGGTG
GGCGCGGTGGCGGCAGCGGCGGAGGTCATCAGGGAGACAAGGTGGACGAC
GACGACGACGACGACGACTCACGGCCGTTGACCGGGAGAGGTGACGTCGG
CGGCGGCGGCGGCGGTGGTGGTGACCGTCGGCTGGATCGCGTTAGAGAGG
CAGAAGCCCTGGAACGTCAGCAGCAGCAACAACAACAACAGCCGCGGCGG
CGGCCGCAAGAGGAAGAACTAGAACGACGGCGGCAAGGAGTCTCGCGGAG
GCAGCGGGATGGCAATGATGATGATGACGCGCCACGGAGATCGGGAGACG
GTCAGGAGTGGGCGCAGCAGCAGCAACGGCGGCGGAGACGGCCGCAGTCT
GAATCCGAGGACAGCAGCAGCTGCCGCAGCGGCGGCGGCAGGGGTATGTT
GTTGTTGTCGTCGTCGACGTCGTCGGTGCCGGGGGGCGCGCTGAGGGCGG
AGCGCGCTCGGCACGAGAGAGAGCTGGAGAGGGAGAGAGCGGCGGCGGAA
GCAAGAGTGGGGGCGCTGAAGCTCCGGCTTGTGCAAACAGCGCAGGTATT
ACTGAAAAGAGAGAAATCGTCTGCTGTAGGTACTTTTTTCTCTTTTCTTA
CTCAGACACAACGACTTCGTCTCTGTGCACCGATGATAAGAATAGCGATG
GATGCAAGCTCCATAATATATATATTTTAGGTCATTCACACAGAAAGACG
ACCCGTTCGATATATGACCACAGTCGATCTAGTAAATACCATAGCTGTCT
CTGAACGGTCTGTGCCGCCTGTAGCAGCGGAGAATGGATGCTTGGTCGCT
TGCGCTCTCCATGTGTCGGCCGGGCCACTGCTGTTGTTTAACTGATAACC
GCTCCGGTTTGTTTGTGGTTTCGATTTATGCTGTGGTTGGGTGCGGTACG
GTCGAATATTATGGCACGGTTTTGATCGCGGGGGCGGTTTTCACGGCGCC
GAGGTGTGACGTTGATGGGAAAGAAAAATAAAACGATCCTGAGAACACCG
CCCCGGGCTACACATAACTACCGCAGGTATCTCTTTCGGCACACGTTGGA
GGCTACGGTATGTACTAATTTATCCTTTAGAACCTCCCCCTAGCGCGTTC
AGTGAAGCGGGCGGAAACGTCTTTAGTCGTAGAGGCCGTACATAGGTAGC
GAGAGATAACCGGGGCTGTTTCCTGTGAGAGGGAAGACTGTCGCGCTTAT
CTTCTCCCTTTCGCCGTTCTTGTCACAGCGTTCTCGCTTTCTTGTTGTTG
TTTGTTGTGTGATGAAACGAAAGATTTCACGCGTGTTTTTCGGCAGAACG
GAGAAGTATGGACGCGAGGCCTTGTGGCAGGGTAGTCACGCCCGGGAGAG
AGAGTGTGTCGACCGCTTTGGTTGATCGTGTCTTCAGATCGAAAGCTACA
CCCAGCCCCTTTCTTACTTTCTCCACACAACGAACTAATTTCCTCCGTAG
ACAAGCATCTGTGGGGATAGATAGACTAGCAATGAACTTAGCGTCAGTGG
ACCAAGAACAACCTGCGGGCCTGGCGGGTGGTGTACCGCAGGCAGCTGTG
GAGGCAACGTGCACGCACGAAATCACACGCCCCTCTCCCCCCCGCCCCCG
AACGATTGGCCATCGGTGATCTGTCCTGTGGGAACAATGCTTCGTCCTCT
CGAGGACACGTGGTCAATGGTCTAACGGCTATGGCACGCAAAACATAAGA
GTACGCCCCCCCCCCCCCCCCCCCCGCCACTTTGCTCTCGCGGGAAACCA
AACCAAACCCACAGGCCCTAGGCAAGGCGCAGGCGCGGGAGCAAGCGGAG
GCCTGGGGGAGGGGTAAGGCGGGCGCCGCTGCTGCCATGGCGAGCGGCGG
CGGCGGCGGCGGCGATGACAGCAATCCTTCCGCTCGTGGTGGCGAAGGGG
GTGCTAGCAGTAGTAGTAGGGCCGGCGGCGGCGGGGGCGGCGAAGACGGC
GTGAGGCTTAGGGAGAGGGGGCGGGTGCTGGAGCTGGAGGCCGCGGTGGC
TAAGGAGCGGCAGGCGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14202:1..2869-

>mRNA_E-fasciculatus_F_contig14202.3072.1 ID=mRNA_E-fasciculatus_F_contig14202.3072.1|Name=mRNA_E-fasciculatus_F_contig14202.3072.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2460bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14202:1..2869- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGTGGAGTTTTCGGGAGACCCGGCGTTGCGGCCGGTGGCGGAAGCGG
CGGCCGGAGTTCTCAGAGTCGGCAAGCGGAGGGGGGCGGGGAGGAGGAGA
AAGAGGAGGAGGAACAGCGGCAGCAGCAGCAGCAGCAGGGCGGTGGAGTT
TTCGGGAGACCCGGCGTTGCGGCCGGTGGCGGAAGCGGCGGCCGGAGTTC
TCAGAGTCGGCAAGCGGAGGGGGGCGGGGAGGAGGAGAAAGAGGAGGAGG
AACAGCGGCAGCAGCAGCAGCAGCAGGACCGCGTCGCCGAGCTGGAGAAA
GAGCTGACCCACGTGCGCTCGTTCTACACGCGCAAGCTCAAGGAGGTGGA
GCGTAGGGCGGAGAACCAGATGCGTGCGCTCAAGCGAGGGAGCCCCGGCA
CCGGCGCCGGCGGCAGCAGGCATCGCGGTCGAGATGCCGACGGCGGGGGT
GATGAGGGGGAGGGGGAGGGGGGAGGAGACCCGTTCCGGCGAGAGCAACA
GCAGCACCACCACCATCAGGTGCCAGCGGCGGTCGGTTTAGCAGCGATGC
AACAGGGAAGAGAAGGTGGGCGCGGTGGCGGCAGCGGCGGAGGTCATCAG
GGAGACAAGGTGGACGACGACGACGACGACGACGACTCACGGCCGTTGAC
CGGGAGAGGTGACGTCGGCGGCGGCGGCGGCGGTGGTGGTGACCGTCGGC
TGGATCGCGTTAGAGAGGCAGAAGCCCTGGAACGTCAGCAGCAGCAACAA
CAACAACAGCCGCGGCGGCGGCCGCAAGAGGAAGAACTAGAACGACGGCG
GCAAGGAGTCTCGCGGAGGCAGCGGGATGGCAATGATGATGATGACGCGC
CACGGAGATCGGGAGACGGTCAGGAGTGGGCGCAGCAGCAGCAACGGCGG
CGGAGACGGCCGCAGTCTGAATCCGAGGACAGCAGCAGCTGCCGCAGCGG
CGGCGGCAGGGGTATGTTGTTGTTGTCGTCGTCGACGTCGTCGGTGCCGG
GGGGCGCGCTGAGGGCGGAGCGCGCTCGGCACGAGAGAGAGCTGGAGAGG
GAGAGAGCGGCGGCGGAAGCAAGAGTGGGGGCGCTGAAGCTCCGGCTTGT
GCAAACAGCGCAGGACCGCGTCGCCGAGCTGGAGAAAGAGCTGACCCACG
TGCGCTCGTTCTACACGCGCAAGCTCAAGGAGGTGGAGCGTAGGGCGGAG
AACCAGATGCGTGCGCTCAAGCGAGGGAGCCCCGGCACCGGCGCCGGCGG
CAGCAGGCATCGCGGTCGAGATGCCGACGGCGGGGGTGATGAGGGGGAGG
GGGAGGGGGGAGGAGACCCGTTCCGGCGAGAGCAACAGCAGCACCACCAC
CATCAGGTGCCAGCGGCGGTCGGTTTAGCAGCGATGCAACAGGGAAGAGA
AGGTGGGCGCGGTGGCGGCAGCGGCGGAGGTCATCAGGGAGACAAGGTGG
ACGACGACGACGACGACGACGACTCACGGCCGTTGACCGGGAGAGGTGAC
GTCGGCGGCGGCGGCGGCGGTGGTGGTGACCGTCGGCTGGATCGCGTTAG
AGAGGCAGAAGCCCTGGAACGTCAGCAGCAGCAACAACAACAACAGCCGC
GGCGGCGGCCGCAAGAGGAAGAACTAGAACGACGGCGGCAAGGAGTCTCG
CGGAGGCAGCGGGATGGCAATGATGATGATGACGCGCCACGGAGATCGGG
AGACGGTCAGGAGTGGGCGCAGCAGCAGCAACGGCGGCGGAGACGGCCGC
AGTCTGAATCCGAGGACAGCAGCAGCTGCCGCAGCGGCGGCGGCAGGGGT
ATGTTGTTGTTGTCGTCGTCGACGTCGTCGGTGCCGGGGGGCGCGCTGAG
GGCGGAGCGCGCTCGGCACGAGAGAGAGCTGGAGAGGGAGAGAGCGGCGG
CGGAAGCAAGAGTGGGGGCGCTGAAGCTCCGGCTTGTGCAAACAGCGCAG
GCCCTAGGCAAGGCGCAGGCGCGGGAGCAAGCGGAGGCCTGGGGGAGGGG
TAAGGCGGGCGCCGCTGCTGCCATGGCGAGCGGCGGCGGCGGCGGCGGCG
ATGACAGCAATCCTTCCGCTCGTGGTGGCGAAGGGGGTGCTAGCAGTAGT
AGTAGGGCCGGCGGCGGCGGGGGCGGCGAAGACGGCGTGAGGCTTAGGGA
GAGGGGGCGGGTGCTGGAGCTGGAGGCCGCGGTGGCTAAGGAGCGGCAGG
CGGCGGCCCTAGGCAAGGCGCAGGCGCGGGAGCAAGCGGAGGCCTGGGGG
AGGGGTAAGGCGGGCGCCGCTGCTGCCATGGCGAGCGGCGGCGGCGGCGG
CGGCGATGACAGCAATCCTTCCGCTCGTGGTGGCGAAGGGGGTGCTAGCA
GTAGTAGTAGGGCCGGCGGCGGCGGGGGCGGCGAAGACGGCGTGAGGCTT
AGGGAGAGGGGGCGGGTGCTGGAGCTGGAGGCCGCGGTGGCTAAGGAGCG
GCAGGCGGCG
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