mRNA_E-fasciculatus_F_contig1420.3070.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1420.3070.1
Unique NamemRNA_E-fasciculatus_F_contig1420.3070.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1420.3070.1 vs. uniprot
Match: D7FLG8_ECTSI (Transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG8_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 8.800e-52
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 1 
Query:    1 QRRFQLRAASAAVPPEAAPSGAAGDDGAEADKSAVGRFKGYPGAVYKFTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYDVDIDK 333
            +RRFQLRAASAAVPPEAAPSGAAGD GAEADKS +G       AVY+FTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYDVDIDK
Sbjct:   83 KRRFQLRAASAAVPPEAAPSGAAGD-GAEADKSVIG-------AVYRFTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYDVDIDK 185
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BLAST of mRNA_E-fasciculatus_F_contig1420.3070.1 vs. uniprot
Match: A0A6H5JNV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV9_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.050e-49
Identity = 97/113 (85.84%), Postives = 102/113 (90.27%), Query Frame = 1 
Query:    1 QRRFQLRAASAAVPPEAAPSGAAGDDGAEADKSAVGRFKGYPGAVYKFTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYDVDIDKAS 339
            +RRFQL AASAAVPPEAAPSG AGD GAEADKS +G       AVY+FTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYD+DIDKA+
Sbjct:   83 KRRFQLHAASAAVPPEAAPSGTAGD-GAEADKSVIG-------AVYRFTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYDIDIDKAN 187
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BLAST of mRNA_E-fasciculatus_F_contig1420.3070.1 vs. uniprot
Match: A0A835YU62_9STRA (Tocopherol polyprenyltransferase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU62_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.990e-28
Identity = 56/90 (62.22%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:   88 ADKSAVGRFKGYPG--------AVYKFTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYDVDIDK 333
            A++S  G   G PG        ++YKFTRPHTI+GTILAS+TGVARALIE+P A+ L L+P+A++G+L+LLLGNA+IVGINQIYDVD+D+
Sbjct:    5 AERSVEGTSTGEPGKGVRATAKSIYKFTRPHTIRGTILASLTGVARALIETPTAVELRLIPRAIMGMLALLLGNAYIVGINQIYDVDVDR 94
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BLAST of mRNA_E-fasciculatus_F_contig1420.3070.1 vs. uniprot
Match: A0A7S3XLT2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLT2_HETAK)

HSP 1 Score: 110 bits (275), Expect = 4.800e-27
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:  130 AVYKFTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYDVDIDKAS 339
            A+YKFTRPHTI+GTILASVTGVARALIE P  I+L LVP+A LG+ +LL+GNA+IVGINQIYDVDIDK +
Sbjct:   19 ALYKFTRPHTIRGTILASVTGVARALIEDPQTIALSLVPRAALGMAALLMGNAYIVGINQIYDVDIDKVN 88
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BLAST of mRNA_E-fasciculatus_F_contig1420.3070.1 vs. uniprot
Match: A0A7R9UKU9_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UKU9_DIALT)

HSP 1 Score: 110 bits (274), Expect = 5.200e-27
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:  127 GAVYKFTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYDVDIDK 333
            G++YKFTRPHTI+GTILAS  GVARALIE P+AISL LVP+A+ GLL+LLLGNAFIVGINQIYDV++DK
Sbjct:    4 GSLYKFTRPHTIRGTILASFAGVARALIEHPSAISLQLVPQALRGLLALLLGNAFIVGINQIYDVEVDK 72
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BLAST of mRNA_E-fasciculatus_F_contig1420.3070.1 vs. uniprot
Match: A0A8J5XDN9_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XDN9_DIALT)

HSP 1 Score: 110 bits (274), Expect = 2.000e-26
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:  118 GYPGAVYKFTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYDVDIDK 333
            G   A+YKFTRPHTI+GTILAS  GVARALIE P+AISL LVP+A+ GLL+LLLGNAFIVGINQIYDV++DK
Sbjct:   85 GVANALYKFTRPHTIRGTILASFAGVARALIEHPSAISLQLVPQALRGLLALLLGNAFIVGINQIYDVEVDK 156
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BLAST of mRNA_E-fasciculatus_F_contig1420.3070.1 vs. uniprot
Match: A0A0G4FQG2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FQG2_9ALVE)

HSP 1 Score: 110 bits (276), Expect = 3.260e-26
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:   46 EAAPSG---AAGDDGAEADKSAVGRFKGYPGAVYKFTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYDVDIDKAS 339
            EA+P+G     G DG EA  S +        AVYKFTRPHTI+GTILASV GVARAL+E+P  + L LVP+A+ GLL LLLGNA+IVG+NQIYDVDID+ +
Sbjct:  164 EASPAGDQKGGGGDGVEA--STISWLPAPLAAVYKFTRPHTIRGTILASVVGVARALVENPECVDLALVPRALFGLLGLLLGNAWIVGVNQIYDVDIDRVN 262
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BLAST of mRNA_E-fasciculatus_F_contig1420.3070.1 vs. uniprot
Match: A0A7S2UTD4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTD4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.190e-26
Identity = 53/70 (75.71%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:  130 AVYKFTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYDVDIDKAS 339
            ++YKFTRPHTI+GTILAS TGVARALIE P  ISL+LVP+AVLGL++LL+GNA+IVGINQI+DVD+DK +
Sbjct:   95 SMYKFTRPHTIRGTILASCTGVARALIEHPTQISLNLVPRAVLGLVALLMGNAYIVGINQIFDVDVDKVN 164
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BLAST of mRNA_E-fasciculatus_F_contig1420.3070.1 vs. uniprot
Match: H6WB95_VAULI (Tocopherol polyprenyltransferase-like protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB95_VAULI)

HSP 1 Score: 109 bits (272), Expect = 5.440e-26
Identity = 51/68 (75.00%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:  130 AVYKFTRPHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVGINQIYDVDIDK 333
            ++YKFTRPHTI+GTILAS+TGV RALIE+P +I+++L+PKA LG+++LLLGNA+IVGINQIYDVDIDK
Sbjct:  119 SIYKFTRPHTIRGTILASLTGVLRALIENPTSINVNLIPKAALGMIALLLGNAYIVGINQIYDVDIDK 186
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BLAST of mRNA_E-fasciculatus_F_contig1420.3070.1 vs. uniprot
Match: A0A7S2FU36_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU36_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.480e-25
Identity = 59/91 (64.84%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:   73 DDGAEADKSAVGR-FKGYPGAVYKFTRPHTIKGTILASVTGVARALIESPNAI-SLDLVPKAVLGLLSLLLGNAFIVGINQIYDVDIDKAS 339
            D G E  + A G   KG   AVYKF RPHTI+GT+LASVTGVARAL E P +I +  L+P AV G+L+LLLGNA IVGINQIYDVDIDK +
Sbjct:   76 DGGVEGMQGAAGTGVKGAVRAVYKFLRPHTIRGTVLASVTGVARALTEVPTSIITWSLLPNAVFGMLALLLGNALIVGINQIYDVDIDKVN 166
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1420.3070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLG8_ECTSI8.800e-5289.19Transferase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JNV9_9PHAE1.050e-4985.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YU62_9STRA6.990e-2862.22Tocopherol polyprenyltransferase-like protein n=1 ... [more]
A0A7S3XLT2_HETAK4.800e-2777.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9UKU9_DIALT5.200e-2779.71Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]
A0A8J5XDN9_DIALT2.000e-2677.78Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A0G4FQG2_9ALVE3.260e-2661.39Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S2UTD4_9STRA4.190e-2675.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H6WB95_VAULI5.440e-2675.00Tocopherol polyprenyltransferase-like protein n=1 ... [more]
A0A7S2FU36_9STRA1.480e-2564.84Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1420contigE-fasciculatus_F_contig1420:242..2346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue6.4e-41
Seed eggNOG ortholog2880.D7FLG8
Preferred nameVTE2-2
KEGG rclassRC01840
KEGG koko:K12501
KEGG ReactionR08782
KEGG Pathwayko00130,map00130
EggNOG free text desc.homogentisate solanyltransferase activity
EggNOG OGs2QUHT@2759,COG0382@1
EC2.5.1.117
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01006
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontransferase
Ec32 orthologEc-17_001240.1
Exons3
Model size342
Cds size342
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1420.3070.1prot_E-fasciculatus_F_contig1420.3070.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1420 242..2346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.595719-CDS-E-fasciculatus_F_contig1420:241..4071622927910.595719-CDS-E-fasciculatus_F_contig1420:241..407Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1420 242..407 +
1695995748.0232828-CDS-E-fasciculatus_F_contig1420:241..4071695995748.0232828-CDS-E-fasciculatus_F_contig1420:241..407Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1420 242..407 +
1622927910.612868-CDS-E-fasciculatus_F_contig1420:1159..12231622927910.612868-CDS-E-fasciculatus_F_contig1420:1159..1223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1420 1160..1223 +
1695995748.0378983-CDS-E-fasciculatus_F_contig1420:1159..12231695995748.0378983-CDS-E-fasciculatus_F_contig1420:1159..1223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1420 1160..1223 +
1622927910.624932-CDS-E-fasciculatus_F_contig1420:2234..23461622927910.624932-CDS-E-fasciculatus_F_contig1420:2234..2346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1420 2235..2346 +
1695995748.051887-CDS-E-fasciculatus_F_contig1420:2234..23461695995748.051887-CDS-E-fasciculatus_F_contig1420:2234..2346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1420 2235..2346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1420.3070.1

>prot_E-fasciculatus_F_contig1420.3070.1 ID=prot_E-fasciculatus_F_contig1420.3070.1|Name=mRNA_E-fasciculatus_F_contig1420.3070.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=114bp
QRRFQLRAASAAVPPEAAPSGAAGDDGAEADKSAVGRFKGYPGAVYKFTR
PHTIKGTILASVTGVARALIESPNAISLDLVPKAVLGLLSLLLGNAFIVG
INQIYDVDIDKAS*
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mRNA from alignment at E-fasciculatus_F_contig1420:242..2346+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1420.3070.1 ID=mRNA_E-fasciculatus_F_contig1420.3070.1|Name=mRNA_E-fasciculatus_F_contig1420.3070.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2105bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1420:242..2346+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAGGCGGTTTCAGTTGCGCGCCGCATCGGCAGCGGTTCCCCCGGAGGC
GGCGCCAAGCGGGGCGGCCGGCGACGACGGAGCGGAAGCGGATAAGTCGG
CGGTCGGAAGGTTTAAGGGATACCCCGGCGCCGTGTATAAGTTCACGCGG
CCGCACACGATCAAAGGTGGGGGTAGTGCATCGTCTCGGTATCCCTTCTA
CGGTGCCCTCTCCCCCCCCCTCGAGGGACTGAAGTCCCCGCGTACATTTA
CATGGGTAGTGCATGCTAGCCCGTCGCCAAGGGAAACGGTTTCTTGTAGG
TCCCTCGGCGCTTTTTGCTCATCGGCTTCAAAAGAGTCGAACTCGCGTTT
GAGCTGTACTAGCTGCGAAACAATGTTGCGCTTGAAATTCGTGTCGCGGA
CAGGTTTTTGTGACAGCAAGTTTTCGCGTCAGGTAGGAAGCTCTCTCAAG
CCTATCTTAAGCCCAAGTGCCTCTTCTTAGTGTCTCTAAGAGGTATTTTC
ATCCCTGTCGGGGAGGGGGGATCTCGTACGCGAAGCTCTTTCTTTGTCCC
CTCCCCGCTGGCGGGAACTTGGGGGGGGGGGGCGGATAGGTTGCTACGAG
TCGCTACTCGGTTTGCGCCCCCGTGTGACCGTGAGGTATGCTGGCGTTCC
TGATTCACCTTGTGTGCGTGGGTGTAGTGCAGTGTAGCTTTTGCCTTACG
CTAACGCTGGAAACAAGGCAAGGTGATTCGGGGGGTGGGAGTTGCATCAA
AAGACCTTCTTCATCGCCTGGTCTGGTGCGCGTTTCGCCCACGTGTTCAT
CATCACTCTCAGGGGTTGTCCAATTAGACCGCGATGGCCGTCGTGATGTG
CTCTCTCTTCTTTTTTTTTTCTCATCTTGTACGTCGTTTTTGGCGATTTT
TGTTTTCTATTTTCGCAGGGACGATTCTCGCTTCGGTGACGGGCGTGGCG
AGAGCTCTCATCGAATCTCCAAACGCGATCAGGTGAAAAAAGTCTCGAAA
ACACGAACGTTTCATAACCTTTTTTTTTTCCTCCGTGGGTGCGGAGATTT
GACCCAAACCCGGACGCATCTTAGTCGAGCAGAAAGGAGGAACGCGTGAC
TCACGAACTAACGTCCGGCTGCACGCAGGGTCCTCCAAAGCGCCCGCCAC
ACATACCGTAGTTTACACGAGCCACAACACTCCCTGGATCGACTAACCCC
GGGGCGAACAAGTATACCTTTGTCTCCTGAAGGGAACTCGAAGACCCCAC
GACGATGAGGATGAAACAATCAAGCCAAATGTTTTCGGAGAGATCTCGAT
GGGACGGTATACGGTACGGTACGGTACGGTACGGTACGGTACGGTACGGT
ACGGTTCCAACGCCGCCAGCTTCGGCACCGTCTGTGTTGCTGCTGTGGAG
TACTCGAGCTTTGAAAGTCGGTCCAGGGGTTGTGGTGTGTCTTGCAACCG
ACGGCGGGGTAGCTGCAACACATGTGCAGCGCCATGGCTTATGACCAGCC
CGGCGAGGGGTACGCACACGTCGTCATCACCATCATCAGCATCATCATCA
TTACATCATCATCATCATCGGCCTTGCTTTTTCTCTGCCGTTGCCTGTGG
TTCCTACCCCATTGTGGAACCTGTTTGTCCCGCTGGCAGGCGTCGCTACA
ACTGATGCCGACGGCTTGCTAGCAGGAATAGCCTCGATAGAGACGATAGA
GATAGACACAGACTGGTGCTGTTTTTGTGGTCGAAGAACCGTTGGCGACG
AACCCAGACACCACGCGTTTCGCCCATTGGTCAGCCATATCTCCGCAAAA
CGCAAAAACTCCCTCTTGTTCGAAGTCGTCGAGTAACCAAGCAGCGTCTG
CCCTTTCGCTCCGCGTGTGCGATTTGGCATCCTCTTCAGTTGTGTCCATC
CTGCCTCGCGCTGACGACCCTCTGCTGCCCCCCCCCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGCGGCCCCGTGACTGATAGCTTGGAT
CTCGTGCCGAAGGCAGTGCTCGGGTTGCTGTCGCTCCTCCTGGGAAACGC
GTTTATCGTCGGCATCAACCAGATCTACGATGTAGACATCGATAAGGCAA
GTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1420:242..2346+

>mRNA_E-fasciculatus_F_contig1420.3070.1 ID=mRNA_E-fasciculatus_F_contig1420.3070.1|Name=mRNA_E-fasciculatus_F_contig1420.3070.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1420:242..2346+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAGGCGGTTTCAGTTGCGCGCCGCATCGGCAGCGGTTCCCCCGGAGGC
GGCGCCAAGCGGGGCGGCCGGCGACGACGGAGCGGAAGCGGATAAGTCGG
CGGTCGGAAGGTTTAAGGGATACCCCGGCGCCGTGTATAAGTTCACGCGG
CCGCACACGATCAAAGCAGAGGCGGTTTCAGTTGCGCGCCGCATCGGCAG
CGGTTCCCCCGGAGGCGGCGCCAAGCGGGGCGGCCGGCGACGACGGAGCG
GAAGCGGATAAGTCGGCGGTCGGAAGGTTTAAGGGATACCCCGGCGCCGT
GTATAAGTTCACGCGGCCGCACACGATCAAAGGGACGATTCTCGCTTCGG
TGACGGGCGTGGCGAGAGCTCTCATCGAATCTCCAAACGCGATCAGGGAC
GATTCTCGCTTCGGTGACGGGCGTGGCGAGAGCTCTCATCGAATCTCCAA
ACGCGATCAGCTTGGATCTCGTGCCGAAGGCAGTGCTCGGGTTGCTGTCG
CTCCTCCTGGGAAACGCGTTTATCGTCGGCATCAACCAGATCTACGATGT
AGACATCGATAAGGCAAGTTGACTTGGATCTCGTGCCGAAGGCAGTGCTC
GGGTTGCTGTCGCTCCTCCTGGGAAACGCGTTTATCGTCGGCATCAACCA
GATCTACGATGTAGACATCGATAAGGCAAGTTGA
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