mRNA_E-fasciculatus_F_contig142.3065.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig142.3065.1
Unique NamemRNA_E-fasciculatus_F_contig142.3065.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig142.3065.1 vs. uniprot
Match: A0A6H5JHI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI9_9PHAE)

HSP 1 Score: 770 bits (1988), Expect = 4.180e-276
Identity = 404/470 (85.96%), Postives = 426/470 (90.64%), Query Frame = 1 
Query:  139 MRAMAVSCAFHSPGVSPWRFTSRAGVVIRPRLATLDGPGVPVTEAPMRHRSQRGPPILLRDIFGTRSPWLGMKRLERAPLQRLDRLQEVADLALEDRVENGGGYFGCADIGADHGLLAICLHANGANVIAGDRAAGPLKVARENARLYLRHAQQEPLSMLATAAAERGAPSGKRGNTGTPDPTAGKLAQPINKGSSGEGVGNEGAVAVGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVRTMIQILSASTSSSNGEVADSPESSHGRGASALSGLGVRRLVLQPMDARLEYMRDLRVWLRENGWRITQEKIVSTLGKGGRHAFLTLRADSVETLSSSKSDRGVSPFSGPQWPAGMPQGEWSDWLGDFLPSRTTDSGQLRDGERGTERQEASTFLAYLRHQRDWLTAIERARSRTSRGVTAESQDPIAVSEGVDSVLRAVEDAIRISGKDGSEERLVTSRRWRRSSSSTE 1548
            MRA+ VSCAFHSP VSPWRF SRAGVVIRP  A LDGPG P+TEA +R RSQRGPP+LLRDIFGTRSPWLGMKRLERAPLQRLDRLQEVADLALEDRVE+GGG FGCADIGADHGLLAICLHANGANVIAGDRAAGPL +ARENARLYLR AQQ P S+LATAAA+R AP+GK   T TPDPTA  L QPIN+GSSG+GVGNEGAVA GVVPRLECRLGDGLAVLEEGEADTVCIAGVGV+T+IQILSASTS S+G+ A+S ESSHGRGASALS LGVRRLVLQPMDARLEYMRDLRVWLR NGWRI QEKIVSTLGKGGRHAFLTLRAD +E +SS KSD+GVSPFSGP+WPAGMPQGEWSDWLGDFLPSRT DS QLRDG R TERQEA TFLAYLRHQRDWLTAIERARSRTSR VTAESQD  AVSE V SVLRAVEDAIR+SGKDGSEERLVTSRRWRRSS  T+
Sbjct:    1 MRALVVSCAFHSPCVSPWRFASRAGVVIRPCSAALDGPGGPITEASVRKRSQRGPPVLLRDIFGTRSPWLGMKRLERAPLQRLDRLQEVADLALEDRVESGGGSFGCADIGADHGLLAICLHANGANVIAGDRAAGPLNIARENARLYLRRAQQAPFSVLATAAAQRIAPAGKSEYTRTPDPTAETLPQPINEGSSGDGVGNEGAVAHGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVKTIIQILSASTSDSSGDAANSQESSHGRGASALSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCME-MSSVKSDQGVSPFSGPEWPAGMPQGEWSDWLGDFLPSRTMDSNQLRDGGRDTERQEAFTFLAYLRHQRDWLTAIERARSRTSRRVTAESQDSTAVSEAVGSVLRAVEDAIRVSGKDGSEERLVTSRRWRRSSGKTD 469
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3065.1 vs. uniprot
Match: D7FWG2_ECTSI (SAM-dependent methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWG2_ECTSI)

HSP 1 Score: 757 bits (1955), Expect = 4.050e-271
Identity = 398/470 (84.68%), Postives = 418/470 (88.94%), Query Frame = 1 
Query:  139 MRAMAVSCAFHSPGVSPWRFTSRAGVVIRPRLATLDGPGVPVTEAPMRHRSQRGPPILLRDIFGTRSPWLGMKRLERAPLQRLDRLQEVADLALEDRVENGGGYFGCADIGADHGLLAICLHANGANVIAGDRAAGPLKVARENARLYLRHAQQEPLSMLATAAAERGAPSGKRGNTGTPDPTAGKLAQPINKGSSGEGVGNEGAVAVGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVRTMIQILSASTSSSNGEVADSPESSHGRGASALSGLGVRRLVLQPMDARLEYMRDLRVWLRENGWRITQEKIVSTLGKGGRHAFLTLRADSVETLSSSKSDRGVSPFSGPQWPAGMPQGEWSDWLGDFLPSRTTDSGQLRDGERGTERQEASTFLAYLRHQRDWLTAIERARSRTSRGVTAESQDPIAVSEGVDSVLRAVEDAIRISGKDGSEERLVTSRRWRRSSSSTE 1548
            MRA+ VSCAFHSP     RF SRAGV IRP  A LDGPG P+TEA +R RSQRG P+LLRDIFGTRSPWLGMKRLERAPLQRLDRLQEVADLALEDRVE+GGG FGCADIG DHGLLAICLHANGANVIAGDRAAGPL VAR+NA+LYLRHAQQ P S+L TAAAERGAP+GK   TGTPD TA  L +PIN+GSSGEGVGN+GAVA GV PRLECRLGDGLAVLE+GEADTVCIAGVGV+TMIQILS STS S+ +V DSPESSHGRG  ALS LGVRRLVLQPMDARLEYMRDLRVWLRENGWRITQEKIVSTLGKGGRHAFLTLRAD  ETL S KSD+GV PFSGP+WP GMPQ EWSDWLGDFLPSRT DS QLR G RGTERQEASTFLAYLRHQRDWLTAIERARSRTSRGVTAE QD  AVSEGVDSVLRAVEDAIR+SGKDGSEERLVTSRRWRRSSS T+
Sbjct:    1 MRALVVSCAFHSPCQ---RFASRAGVAIRPCSAALDGPGGPITEASVRKRSQRGSPVLLRDIFGTRSPWLGMKRLERAPLQRLDRLQEVADLALEDRVESGGGSFGCADIGTDHGLLAICLHANGANVIAGDRAAGPLNVARQNAKLYLRHAQQAPFSVLTTAAAERGAPAGKSECTGTPDATAETLLRPINEGSSGEGVGNDGAVADGVFPRLECRLGDGLAVLEQGEADTVCIAGVGVKTMIQILSTSTSDSSVDVTDSPESSHGRGVPALSRLGVRRLVLQPMDARLEYMRDLRVWLRENGWRITQEKIVSTLGKGGRHAFLTLRADCTETLRSLKSDQGVPPFSGPEWPTGMPQEEWSDWLGDFLPSRTMDSDQLRIGGRGTERQEASTFLAYLRHQRDWLTAIERARSRTSRGVTAERQDSTAVSEGVDSVLRAVEDAIRVSGKDGSEERLVTSRRWRRSSSKTD 467
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BLAST of mRNA_E-fasciculatus_F_contig142.3065.1 vs. uniprot
Match: A0A7S2SUM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUM0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.170e-10
Identity = 102/374 (27.27%), Postives = 140/374 (37.43%), Query Frame = 1 
Query:  391 RLQEVADLALEDRVENGGGYFGCADIGADHGLLAICLHAN---GANVIAGDRAAGPLKVARENARLYLRHAQQEPLSMLATAAAERGAPSGKRGNTGTPDPTAGKLAQPINKGSSGEGVGNEGAVAVGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVRTMIQILSASTSSSNGEVADSPESSHGRGASALSGLGVRRLVLQPMDARLEYMRDLRVWLRENGWRITQEKIVSTLGKGGRHAFLTLRADSVETLSSSKSDRGVSPFSGPQWPAGMPQGEWSDWLGDFLPSRTTDSGQLRDGERGTERQEASTFLAYLRHQRDWLTAIERARSRTSRGVT--AESQDPIAVSEGVDSVLRAVEDAIRISGKDGSE 1497
            RLQ VA L   D           ADIGADH LL + L A+   G   +A DR   PL+  R+ A  +L                                                         A G+V +L+ RLGDGL+ L EGE DTVC+AG+GV +++++L A                 G     L  LGV  LVLQP+  R   +  LR WL   G+ I  E I    G      ++T RA      S+ KS   ++P  G             D+   FLP           G  G +  EA  +L Y+ H   W    E+  +   RG +  A  +D    ++ +  +L     A+R  G  G E
Sbjct:   39 RLQAVASLVPRD-------CRAIADIGADHALLCMDLVASKRPGLRAVAIDRNRAPLEAGRKAALQHL---------------------------------------------------------APGMVKQLDFRLGDGLSPLSEGEVDTVCVAGMGVSSILRVLGA-----------------GGEPGRLGTLGVDTLVLQPVSPRPAALHGLRKWLDSQGYTIDAEVISRVKGL----FYITTRA----RRSAEKSF--IAPGEG-------------DF---FLPQLIRRRALAGAGSEGDD--EAENYLRYVSHHLRW----EKGNACRKRGASCPANKRDNTGQADFLVQLLEEEVIALRAGGVTGGE 299
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3065.1 vs. uniprot
Match: UPI0003F6AC88 (class I SAM-dependent methyltransferase n=1 Tax=Aneurinibacillus terranovensis TaxID=278991 RepID=UPI0003F6AC88)

HSP 1 Score: 70.5 bits (171), Expect = 6.410e-10
Identity = 44/107 (41.12%), Postives = 54/107 (50.47%), Query Frame = 1 
Query:  757 AVGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVRTMIQILSASTSSSNGEVADSPESSHGRGASALSGLGVRRLVLQPMDARLEYMRDLRVWLRENGWRITQEKIV 1077
            A G+   +E RLGDGLAV+  GEADTVCIAG+G   ++ IL A                       L GL ++ L+LQP  A     R    WL  NGW IT EKI+
Sbjct:   63 AAGLTENIEVRLGDGLAVVHPGEADTVCIAGMGGSLIVSILGA----------------------GLEGLNIKELILQPNVAAPLVRR----WLMNNGWEITAEKII 143
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BLAST of mRNA_E-fasciculatus_F_contig142.3065.1 vs. uniprot
Match: A0A5R9G1Y0_9BACL (SAM-dependent methyltransferase n=1 Tax=Paenibacillus antri TaxID=2582848 RepID=A0A5R9G1Y0_9BACL)

HSP 1 Score: 68.9 bits (167), Expect = 2.580e-9
Identity = 45/113 (39.82%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:  754 VAVGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVRTMIQILSASTSSSNGEVADSPESSHGRGASALSGLGVRRLVLQP-MDARLEYMRDLRVWLRENGWRITQEKIVSTLG 1089
            ++ G+  +++ R+GDGLAVLE  E +T+ IAG+G  T++ ILS                    GA+AL+  GVRRLVLQP +  RL     +R WL ENGW++ QE ++   G
Sbjct:   62 LSAGLASKIDVRIGDGLAVLEPNEVETITIAGMGGGTIVDILSG-------------------GAAALA--GVRRLVLQPNVGERL-----VRAWLLENGWKLVQETLLEEDG 148
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3065.1 vs. uniprot
Match: A0A1A5YC35_9BACL (SAM-dependent methyltransferase n=2 Tax=Paenibacillus oryzae TaxID=1844972 RepID=A0A1A5YC35_9BACL)

HSP 1 Score: 65.9 bits (159), Expect = 2.990e-8
Identity = 50/117 (42.74%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:  751 AVAVGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVRTMIQILSASTSSSNGEVADSPESSHGRGASALSGLGVRRLVLQPM---DARLEYMRDLRVWLRENGWRITQEKIVSTLGK 1092
            A+A G+  RL  R GDGLAVLE GEADT+ IAG+G   M  IL A                 GR    L   GV RLVLQP    DA       +RVWL E+ W +T E ++   GK
Sbjct:   60 ALAAGLTDRLSVRRGDGLAVLEPGEADTITIAGMGGALMSSILEA-----------------GRANGKLE--GVSRLVLQPNIGEDA-------VRVWLLEHNWYLTDEAVLEEDGK 150
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3065.1 vs. uniprot
Match: A0A3G1L2L5_9FIRM (Uncharacterized protein n=2 Tax=Candidatus Formimonas warabiya TaxID=1761012 RepID=A0A3G1L2L5_9FIRM)

HSP 1 Score: 64.7 bits (156), Expect = 4.620e-8
Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:  760 VGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVRTMIQILSASTSSSNGEVADSPESSHGRGASALSGLGVRRLVLQPMDARLEYMRDLRVWLRENGWRITQEKIV 1077
            +G+  +++ RLGDGL VL  GEA+TVC+AG+G  TMI IL               ++ H      L+   VRRL+LQPM      +  +R+WL ++GWRI  E++V
Sbjct:   61 LGIHRKVDTRLGDGLQVLAPGEAETVCMAGMGSTTMINILE--------------QAPH-----VLT--QVRRLILQPMQG----IPRMRIWLAKHGWRIIDEELV 141
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3065.1 vs. uniprot
Match: A0A0G4FDX8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FDX8_VITBC)

HSP 1 Score: 64.7 bits (156), Expect = 1.510e-7
Identity = 44/116 (37.93%), Postives = 63/116 (54.31%), Query Frame = 1 
Query:  778 LECRLGDGLAVLEEGEADTVCIAGVGVRTMIQILSASTSSSNGEVADSPESSHGRGASALSGLGVRRLVLQPMDARLEYMRDLRVWLRENGWRITQEKIVSTLGKGGRHAFLTLRA 1125
            ++ R GDGL  L  GE DTVC+AG+GV  ++ IL           ADS   S  R  S L  L +R LV+QP   RL  +  LR WL+ + W I +E++V      G+  ++T++A
Sbjct:  143 VDVRQGDGLTALSAGEVDTVCVAGMGVGGILDILKGPPQ------ADSDPLS--REDSLLRSLRIRTLVVQPQTPRLGSLYALRRWLQVHQWPINEERLVVI----GKRLYVTIKA 246
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3065.1 vs. uniprot
Match: A0A0U5B954_9BACL (tRNA (Adenine(22)-N(1))-methyltransferase n=1 Tax=Aneurinibacillus soli TaxID=1500254 RepID=A0A0U5B954_9BACL)

HSP 1 Score: 63.2 bits (152), Expect = 1.930e-7
Identity = 42/111 (37.84%), Postives = 55/111 (49.55%), Query Frame = 1 
Query:  757 AVGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVRTMIQILSASTSSSNGEVADSPESSHGRGASALSGLGVRRLVLQPMDARLEYMRDLRVWLRENGWRITQEKIVSTLG 1089
            + G+  R+E RLGDGLAVLE GE D VCI+G+G   +  IL                     GA     +GVR+L+LQP  A     R    WL E+GW++  E I+   G
Sbjct:   63 SAGLTDRIEARLGDGLAVLEPGEVDVVCISGMGGSLIASIL---------------------GAGEAKLVGVRQLILQPNVAAPLVRR----WLMEHGWQLVAEDILEEDG 148
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3065.1 vs. uniprot
Match: A0A2N5N858_9BACL (Putative tRNA-m1A22 methylase n=2 Tax=Paenibacillus TaxID=44249 RepID=A0A2N5N858_9BACL)

HSP 1 Score: 63.2 bits (152), Expect = 2.390e-7
Identity = 46/116 (39.66%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:  748 GAVAVGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVRTMIQILSASTSSSNGEVADSPESSHGRGASALSGLGVRRLVLQP-MDARLEYMRDLRVWLRENGWRITQEKIVSTLGK 1092
            G  A G+   +E R GDGL VL+ GEADTV IAG+G   ++ IL A                 GR    L   GVR+LVLQP +   L     +R WL E+GW + +E I+   GK
Sbjct:   59 GIAAAGLASSIEARKGDGLEVLQPGEADTVTIAGMGGALIVSILEA-----------------GRLGGKLD--GVRQLVLQPNVGEEL-----VRAWLLEHGWHLAEESILEEDGK 150
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig142.3065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHI9_9PHAE4.180e-27685.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWG2_ECTSI4.050e-27184.68SAM-dependent methyltransferase n=1 Tax=Ectocarpus... [more]
A0A7S2SUM0_9STRA1.170e-1027.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI0003F6AC886.410e-1041.12class I SAM-dependent methyltransferase n=1 Tax=An... [more]
A0A5R9G1Y0_9BACL2.580e-939.82SAM-dependent methyltransferase n=1 Tax=Paenibacil... [more]
A0A1A5YC35_9BACL2.990e-842.74SAM-dependent methyltransferase n=2 Tax=Paenibacil... [more]
A0A3G1L2L5_9FIRM4.620e-839.62Uncharacterized protein n=2 Tax=Candidatus Formimo... [more]
A0A0G4FDX8_VITBC1.510e-737.93Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0U5B954_9BACL1.930e-737.84tRNA (Adenine(22)-N(1))-methyltransferase n=1 Tax=... [more]
A0A2N5N858_9BACL2.390e-739.66Putative tRNA-m1A22 methylase n=2 Tax=Paenibacillu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig142contigE-fasciculatus_F_contig142:10774..14620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.2
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog1485543.JMME01000012_gene94
Preferred nametrmK
KEGG koko:K06967
GOsGO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016426,GO:0016429,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
EggNOG free text desc.Psort location Cytoplasmic, score 8.96
EggNOG OGs1V3I4@1239,4H4F1@909932,COG2384@1,COG2384@2
EC2.1.1.217
COG Functional cat.S
Best tax levelNegativicutes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categorymitochondrion
Exons5
Model size1815
Cds size1578
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig142.3065.1prot_E-fasciculatus_F_contig142.3065.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig142 11011..14620 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927909.957029-UTR-E-fasciculatus_F_contig142:10773..110101622927909.957029-UTR-E-fasciculatus_F_contig142:10773..11010Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig142 10774..11010 -
1695995747.8301353-UTR-E-fasciculatus_F_contig142:10773..110101695995747.8301353-UTR-E-fasciculatus_F_contig142:10773..11010Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig142 10774..11010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927909.9720519-CDS-E-fasciculatus_F_contig142:11010..115231622927909.9720519-CDS-E-fasciculatus_F_contig142:11010..11523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 11011..11523 -
1695995747.8422716-CDS-E-fasciculatus_F_contig142:11010..115231695995747.8422716-CDS-E-fasciculatus_F_contig142:11010..11523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 11011..11523 -
1622927909.983011-CDS-E-fasciculatus_F_contig142:11796..120081622927909.983011-CDS-E-fasciculatus_F_contig142:11796..12008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 11797..12008 -
1695995747.8520927-CDS-E-fasciculatus_F_contig142:11796..120081695995747.8520927-CDS-E-fasciculatus_F_contig142:11796..12008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 11797..12008 -
1622927909.9993935-CDS-E-fasciculatus_F_contig142:12759..131371622927909.9993935-CDS-E-fasciculatus_F_contig142:12759..13137Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 12760..13137 -
1695995747.8621378-CDS-E-fasciculatus_F_contig142:12759..131371695995747.8621378-CDS-E-fasciculatus_F_contig142:12759..13137Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 12760..13137 -
1622927910.011502-CDS-E-fasciculatus_F_contig142:13682..139651622927910.011502-CDS-E-fasciculatus_F_contig142:13682..13965Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 13683..13965 -
1695995747.8788373-CDS-E-fasciculatus_F_contig142:13682..139651695995747.8788373-CDS-E-fasciculatus_F_contig142:13682..13965Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 13683..13965 -
1622927910.0241597-CDS-E-fasciculatus_F_contig142:14428..146201622927910.0241597-CDS-E-fasciculatus_F_contig142:14428..14620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 14429..14620 -
1695995747.8905091-CDS-E-fasciculatus_F_contig142:14428..146201695995747.8905091-CDS-E-fasciculatus_F_contig142:14428..14620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 14429..14620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig142.3065.1

>prot_E-fasciculatus_F_contig142.3065.1 ID=prot_E-fasciculatus_F_contig142.3065.1|Name=mRNA_E-fasciculatus_F_contig142.3065.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=526bp
MWWRVLGRIPTVPPRTNRRRQQALRVAPTYLLPCHPTIIFVTSRRTMRAM
AVSCAFHSPGVSPWRFTSRAGVVIRPRLATLDGPGVPVTEAPMRHRSQRG
PPILLRDIFGTRSPWLGMKRLERAPLQRLDRLQEVADLALEDRVENGGGY
FGCADIGADHGLLAICLHANGANVIAGDRAAGPLKVARENARLYLRHAQQ
EPLSMLATAAAERGAPSGKRGNTGTPDPTAGKLAQPINKGSSGEGVGNEG
AVAVGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVRTMIQILSASTSSS
NGEVADSPESSHGRGASALSGLGVRRLVLQPMDARLEYMRDLRVWLRENG
WRITQEKIVSTLGKGGRHAFLTLRADSVETLSSSKSDRGVSPFSGPQWPA
GMPQGEWSDWLGDFLPSRTTDSGQLRDGERGTERQEASTFLAYLRHQRDW
LTAIERARSRTSRGVTAESQDPIAVSEGVDSVLRAVEDAIRISGKDGSEE
RLVTSRRWRRSSSSTEKAEPGEKQP*
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mRNA from alignment at E-fasciculatus_F_contig142:10774..14620-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig142.3065.1 ID=mRNA_E-fasciculatus_F_contig142.3065.1|Name=mRNA_E-fasciculatus_F_contig142.3065.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3847bp|location=Sequence derived from alignment at E-fasciculatus_F_contig142:10774..14620- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGTGGCGTGTACTGGGGAGAATTCCAACAGTCCCGCCGCGGACAAA
CCGCCGCCGACAACAAGCTCTCCGCGTCGCTCCCACTTATCTACTGCCGT
GCCACCCGACCATCATCTTTGTTACTTCAAGAAGAACCATGCGAGCTATG
GCGGTGTCTTGCGCGTTCCACTCCCCGGGCGTGAGTCCGTGGGTGAGTCA
ACCTCTGCTACTGCTGCTGTATGTAGTCATGTAGTCCTCAGATGCCCAAC
GCAGGGTGCATCTCTGATGAAGCAACGGCGGTCATGATCATGATAGCCAT
CAGGCAATGCAATCTCGCAAACACTTTGTACTAGGTTGGCGGTTTGACTG
ACGAAGGGCTAGATTGCTTTCTGCCATTCAACTCACGCCCATGTGTATCT
ATCCACTTGTAGACTTGATGAGCGCTCCGTATCTGGCGCATTCCATGATG
GGTCTTTGATAAGCTTGAGATCCCAGTACTGCATGGCCGTGTCGAGCGTG
TATGTATTTGTTCTATTGTTTGCAGCGATTGATGAGGAAAACCACTGCAA
CCTCTGGCTACAGCTTGTGGCGCTGGGTCTGAAACTCAAGAATGCCACGT
TTGCCTCTCTCTCCGATTCGGATCATGCATGCGGATATACTGGTTGTTTT
TGCAGCGATTCACCTCCCGGGCGGGCGTGGTCATTCGGCCGCGCCTGGCA
ACGCTAGACGGGCCCGGAGTGCCCGTCACCGAGGCGCCCATGCGACATCG
ATCGCAACGCGGGCCGCCGATCTTGCTGAGAGACATCTTCGGGACACGGA
GCCCATGGCTGGGCATGAAGAGGCTAGAGCGAGCTCCCTTACAGCGTCTT
GATCGCCTACAAGAAGTAGCAGATCTAGCCCTAGAGGATAGGGTGGAGAA
TGGTGGCGGGTATTTCGGCTGTGCGGACATAGGAGCAGGTGAGCATTGTG
CTTGCGGGGAATGCGTTGTACGTTTGCTGGCGTTTGGCGTCCGTATCCTT
GAGAGTTGCAGCTCACCGTTAGGCGGTGTTGATGTCCTGAACGCACTGGT
CGTGCCCTTGGTGCTTGTCGCGAGACCTTGCTGTCCGTCATGCGTGCTAT
GCCAGAGGTTAGTTGGATGCAGATGGTGAGTCTCTGTTAAATGTACAGCA
TATCCACTGTGCTACAAGTCAAGTCGACGTTGACTTGTAGAATAATGGAT
ATGCTGTATATGCTGACTTGTAGCATAGTGGATGTGTTCCAGTGTGGATG
TGCTGTAGATGCTGACTTGTAGCATAGTGGATAGCTGTACATCTACCAGC
TCTTCACTTCGAACGTTCTTGTGTTTCTGCCGCGGTCTTGCCCCACGCCC
ACTTCCTACACCTTTTGGCAACAAGCCCCTCGCCGATCTTGCCCATGCAC
ACATGGAGTTGTTAACAAAACGTGGCTTATACTCATGACGTTTTCAACGA
CTGTGCATACCTCGTTCTGCGAGTTGTGCCCAGATCACGGACTGCTCGCG
ATCTGCCTGCACGCCAACGGTGCCAACGTCATCGCCGGCGATAGGGCGGC
CGGACCCCTGAAAGTCGCACGCGAAAACGCCAGGCTGTACCTGAGACACG
CTCAGCAAGAACCCCTCTCCATGCTCGCCACCGCGGCTGCAGAAAGAGGA
GCACCCTCCGGTAAAAGGGGGAATACCGGGACCCCCGACCCTACTGCTGG
AAAACTTGCCCAACCAATAAATAAAGGTAGCAGCGGCGAAGGGGTGGGGA
ATGAGGGGGCTGTCGCGGTCGGGGTTGTCCCGCGCTTGGAGTGCCGTCTG
GGTGATGGGCTAGCCGTGCTGGAGGAAGGGGAAGCGGACACCGTGTGCAT
CGCGGGGGTAGGTGCGTATGTTGTTCGGGTGTGACATACCGGTTGTTGGC
GTTAATTTGGTCGAACTTCATTCTGGAATCTGTTGTCGTTTCTTCCGTTT
CATCGTGTGCTTGGACGACCTTCGTGTTCGCAAGGTGAATTATGTCATCC
TTACGAAGGCTGCTGAGGTAGTTATCATGTGCGATTTGGGAAGTGATGCA
GTATGGAAGTGACCTTATGACGGATGTGGACCTTCGGGGTATCTCCCGAC
GCATCTTTGATGAGTTGGAATGTGTTCCTAGTTGCTTTATGCGTCCTTCC
GACGGTATATATCTTGCGACTGTCTCTTGAGTGCTTTGGTGCTTGTGATG
CACCTGGTGCTCACTGTCTCCTGTTGCTTGTCTTAAAAAAAAGGGACGAC
CTATTAAAACGACCTTGCCTCCTCTTCACGCCGATCAATCGGGTCAGCCG
TGCTCGTCTAGCAGGTTTTGGCTTGGAACCAATCGACAGTCCACTTTGTA
TCCAATCGAAGATGAGAGGTACAGTAGGTGCGTCACCGATTTGTTTTATC
GTTTGAGTGAGGCAACGAAGTATCCGTACAACACCGTTTTTAAACCGCCA
GCACACCCTGAGTACAATAGGCTGCCGTAAATAGTAGCGCTGTTTCCAAG
GTTGTTGCAGTAGCTTTCCATTTTCTAGGAATTTCGTCCTCGTTTGCTGT
TGTCCGTACGCCTGCTCAACCGGCGTGTCTTCCCACGCGAAACCTTTTTC
TTGTTTTTGCAGGTGTCAGGACGATGATACAGATTCTCAGCGCGAGTACG
AGCAGCAGCAATGGCGAGGTAGCGGATAGTCCAGAATCCTCGCACGGGCG
GGGGGCGTCTGCGCTGTCTGGTCTAGGAGTACGACGGCTTGTGCTGCAGC
CAATGGACGCTAGACTGGAGTACATGCGCGACCTACGCGTGTGGTTACGA
GAAAATGGTTGGCGAATAACACAGGTGGGGCGCACATCTGCGACTTTCAG
GCAATGGTTGTTGTGTTATGGCCGTACCGTTCCAATCACGTACATGGGCT
CAGCGAAAAGTATGGAACAAATTCAAGGGCTTTGGGTTTCTGCGTTTCCA
CGCCTTCGGCATCGACGTATCACGTTGCTCCTCATGGCACCTGTGGCTTC
GGTAGATAAGCGCCGCCACCTATAGTCGATGTCACGTTCAAGCAGCTGCT
GCTGCGCCTCGTACGCCTTCGCATCTGCCCCCCCTTCAATTCTGCAGGAA
AAAATCGTGTCGACACTGGGCAAGGGGGGCAGACACGCATTTCTGACGCT
GCGGGCAGACAGCGTGGAAACGCTAAGCAGCTCCAAAAGTGACCGGGGGG
TTTCCCCCTTCTCTGGCCCACAGTGGCCAGCAGGCATGCCACAGGGAGAA
TGGTCAGACTGGCTCGGGGACTTTTTGCCTTCGCGAACCACGGACTCCGG
CCAGCTGCGCGACGGAGAGCGAGGTACAGAGCGGCAAGAGGCGTCCACGT
TTCTTGCGTATCTGAGGCACCAGCGAGACTGGCTGACGGCTATCGAGCGT
GCACGTTCACGGACGAGCCGCGGGGTAACGGCCGAAAGCCAGGACCCCAT
TGCTGTCTCGGAGGGCGTCGACAGCGTGTTGAGAGCCGTCGAAGATGCCA
TCAGAATATCAGGAAAAGATGGGTCGGAAGAGAGACTCGTTACGTCGAGA
CGGTGGAGGAGATCTTCTAGCAGTACGGAAAAAGCAGAACCGGGAGAAAA
ACAACCGTGATCATGTTTGACTGCGAGATACGTAGCGCCAATCTTTGCTC
TTTGGGCCACTTCTGAATCCGTCGACCCACGCGGTTGAGCTCGACTTTTT
CTTTAATGGCTTGAGATTTTTTCATCAGCGAAACATGCATGGTAGTGATC
TCAGGCTCGGTAGCGGTGTGTGAAGTTTTGGTGTGTGGGCTGAAACATGG
GGCAAGCGCAGCAAATCACCATACCGGTGTCCCCATGTCCATATGAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig142:10774..14620-

>mRNA_E-fasciculatus_F_contig142.3065.1 ID=mRNA_E-fasciculatus_F_contig142.3065.1|Name=mRNA_E-fasciculatus_F_contig142.3065.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3156bp|location=Sequence derived from alignment at E-fasciculatus_F_contig142:10774..14620- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGTGGCGTGTACTGGGGAGAATTCCAACAGTCCCGCCGCGGACAAA
CCGCCGCCGACAACAAGCTCTCCGCGTCGCTCCCACTTATCTACTGCCGT
GCCACCCGACCATCATCTTTGTTACTTCAAGAAGAACCATGCGAGCTATG
GCGGTGTCTTGCGCGTTCCACTCCCCGGGCGTGAGTCCGTGGATGTGGTG
GCGTGTACTGGGGAGAATTCCAACAGTCCCGCCGCGGACAAACCGCCGCC
GACAACAAGCTCTCCGCGTCGCTCCCACTTATCTACTGCCGTGCCACCCG
ACCATCATCTTTGTTACTTCAAGAAGAACCATGCGAGCTATGGCGGTGTC
TTGCGCGTTCCACTCCCCGGGCGTGAGTCCGTGGCGATTCACCTCCCGGG
CGGGCGTGGTCATTCGGCCGCGCCTGGCAACGCTAGACGGGCCCGGAGTG
CCCGTCACCGAGGCGCCCATGCGACATCGATCGCAACGCGGGCCGCCGAT
CTTGCTGAGAGACATCTTCGGGACACGGAGCCCATGGCTGGGCATGAAGA
GGCTAGAGCGAGCTCCCTTACAGCGTCTTGATCGCCTACAAGAAGTAGCA
GATCTAGCCCTAGAGGATAGGGTGGAGAATGGTGGCGGGTATTTCGGCTG
TGCGGACATAGGAGCAGCGATTCACCTCCCGGGCGGGCGTGGTCATTCGG
CCGCGCCTGGCAACGCTAGACGGGCCCGGAGTGCCCGTCACCGAGGCGCC
CATGCGACATCGATCGCAACGCGGGCCGCCGATCTTGCTGAGAGACATCT
TCGGGACACGGAGCCCATGGCTGGGCATGAAGAGGCTAGAGCGAGCTCCC
TTACAGCGTCTTGATCGCCTACAAGAAGTAGCAGATCTAGCCCTAGAGGA
TAGGGTGGAGAATGGTGGCGGGTATTTCGGCTGTGCGGACATAGGAGCAG
ATCACGGACTGCTCGCGATCTGCCTGCACGCCAACGGTGCCAACGTCATC
GCCGGCGATAGGGCGGCCGGACCCCTGAAAGTCGCACGCGAAAACGCCAG
GCTGTACCTGAGACACGCTCAGCAAGAACCCCTCTCCATGCTCGCCACCG
CGGCTGCAGAAAGAGGAGCACCCTCCGGTAAAAGGGGGAATACCGGGACC
CCCGACCCTACTGCTGGAAAACTTGCCCAACCAATAAATAAAGGTAGCAG
CGGCGAAGGGGTGGGGAATGAGGGGGCTGTCGCGGTCGGGGTTGTCCCGC
GCTTGGAGTGCCGTCTGGGTGATGGGCTAGCCGTGCTGGAGGAAGGGGAA
GCGGACACCGTGTGCATCGCGGGGGTAGATCACGGACTGCTCGCGATCTG
CCTGCACGCCAACGGTGCCAACGTCATCGCCGGCGATAGGGCGGCCGGAC
CCCTGAAAGTCGCACGCGAAAACGCCAGGCTGTACCTGAGACACGCTCAG
CAAGAACCCCTCTCCATGCTCGCCACCGCGGCTGCAGAAAGAGGAGCACC
CTCCGGTAAAAGGGGGAATACCGGGACCCCCGACCCTACTGCTGGAAAAC
TTGCCCAACCAATAAATAAAGGTAGCAGCGGCGAAGGGGTGGGGAATGAG
GGGGCTGTCGCGGTCGGGGTTGTCCCGCGCTTGGAGTGCCGTCTGGGTGA
TGGGCTAGCCGTGCTGGAGGAAGGGGAAGCGGACACCGTGTGCATCGCGG
GGGTAGGTGTCAGGACGATGATACAGATTCTCAGCGCGAGTACGAGCAGC
AGCAATGGCGAGGTAGCGGATAGTCCAGAATCCTCGCACGGGCGGGGGGC
GTCTGCGCTGTCTGGTCTAGGAGTACGACGGCTTGTGCTGCAGCCAATGG
ACGCTAGACTGGAGTACATGCGCGACCTACGCGTGTGGTTACGAGAAAAT
GGTTGGCGAATAACACAGGTGTCAGGACGATGATACAGATTCTCAGCGCG
AGTACGAGCAGCAGCAATGGCGAGGTAGCGGATAGTCCAGAATCCTCGCA
CGGGCGGGGGGCGTCTGCGCTGTCTGGTCTAGGAGTACGACGGCTTGTGC
TGCAGCCAATGGACGCTAGACTGGAGTACATGCGCGACCTACGCGTGTGG
TTACGAGAAAATGGTTGGCGAATAACACAGGAAAAAATCGTGTCGACACT
GGGCAAGGGGGGCAGACACGCATTTCTGACGCTGCGGGCAGACAGCGTGG
AAACGCTAAGCAGCTCCAAAAGTGACCGGGGGGTTTCCCCCTTCTCTGGC
CCACAGTGGCCAGCAGGCATGCCACAGGGAGAATGGTCAGACTGGCTCGG
GGACTTTTTGCCTTCGCGAACCACGGACTCCGGCCAGCTGCGCGACGGAG
AGCGAGGTACAGAGCGGCAAGAGGCGTCCACGTTTCTTGCGTATCTGAGG
CACCAGCGAGACTGGCTGACGGCTATCGAGCGTGCACGTTCACGGACGAG
CCGCGGGGTAACGGCCGAAAGCCAGGACCCCATTGCTGTCTCGGAGGGCG
TCGACAGCGTGTTGAGAGCCGTCGAAGATGCCATCAGAATATCAGGAAAA
GATGGGTCGGAAGAGAGACTCGTTACGTCGAGACGGTGGAGGAGATCTTC
TAGCAGTACGGAAAAAGCAGAACCGGGAGAAAAACAACCGTGAGAAAAAA
TCGTGTCGACACTGGGCAAGGGGGGCAGACACGCATTTCTGACGCTGCGG
GCAGACAGCGTGGAAACGCTAAGCAGCTCCAAAAGTGACCGGGGGGTTTC
CCCCTTCTCTGGCCCACAGTGGCCAGCAGGCATGCCACAGGGAGAATGGT
CAGACTGGCTCGGGGACTTTTTGCCTTCGCGAACCACGGACTCCGGCCAG
CTGCGCGACGGAGAGCGAGGTACAGAGCGGCAAGAGGCGTCCACGTTTCT
TGCGTATCTGAGGCACCAGCGAGACTGGCTGACGGCTATCGAGCGTGCAC
GTTCACGGACGAGCCGCGGGGTAACGGCCGAAAGCCAGGACCCCATTGCT
GTCTCGGAGGGCGTCGACAGCGTGTTGAGAGCCGTCGAAGATGCCATCAG
AATATCAGGAAAAGATGGGTCGGAAGAGAGACTCGTTACGTCGAGACGGT
GGAGGAGATCTTCTAGCAGTACGGAAAAAGCAGAACCGGGAGAAAAACAA
CCGTGA
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