mRNA_E-fasciculatus_F_contig1419.3059.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1419.3059.1
Unique NamemRNA_E-fasciculatus_F_contig1419.3059.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1419.3059.1 vs. uniprot
Match: D7FR62_ECTSI (Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR62_ECTSI)

HSP 1 Score: 628 bits (1620), Expect = 1.710e-215
Identity = 507/682 (74.34%), Postives = 526/682 (77.13%), Query Frame = 1 
Query:   28 QTLTQDFLEDDPSLANAVDATEFGTGYRPLHYAAYGGFLGVCEALHAAGARPLAAGDNGVTALFLAAQAGKADVVRFLLDLGADPTARERESGLCAMDVASESDPDVFRQMQEKGGFEVPPAPEVPPMVTRIESSSLQVAYLPFPEASGQLPVTRYKVKVEHLGDDNSSNQAAQTPNAXXXXXXXXXXXXXXASSNIPFDVDGAEGAENAPRVPPAADDPDACGDDNGFANPTLSKVVLVPSAGGTNSTAEGVRQKRTFVTVKGLKPATRYRVKVAAINALGFGPYGPPSAAVMLPEKTEGXXXXXXXXTAKEHESSVGAERAKKGKGRQVLAREKRRSMAAQAARLQXXXXXXXXXXXXXXXXXXXXXXXXXXN-AKVSGRQQLAATAGGDY-GRHTGGVGAGGDGRERILLTESSASPHHHRSRSQPRHDGVGLAARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAPPLAADTTETPRYLAATSAGRMSARAYRQRADGGG-----DGTAEESHRGRIAGSNAGDNQPLRGSPSPRVADKKASGGSSSKRFGGGAXXXXXXXXXXXXXXXXXXXXXRPAAGENRGG-CSSSDVSMSSCGDMTISSEEQEGEEMAYTG 2049
            + L  DFLEDDPSLANA D TEFGTGYRPLHYAAYGGFLGVCEALHAAGARPLAAGDNGVTALFLAAQAGKADVVRFLL LGADPTARERESGLCAMDVASESDP+VFRQMQEKGGFEVPPAPEVPP VTR+E +SLQVAYLPFPEASGQLPVTRYKVKVEH G+  SSNQAAQ P+  XXXXXXXXXXXXX   NIP DVDG EGAENA R PPAAD PDA GDD+ FANPTLSKVVLVPSAG TNS +EG RQKRT V V+GL+PATRYRVKVAAINALGFGPYGPPS AV+LPEK EG XXXXXXX  +E+ SSVGAERAKKGKGRQVLAREKRRSMAAQA RLQ       XXXXXXXXXXXXXXX    + AKVSGRQ+LAAT GGDY GRH GGVGAGGDGRE  LLTESS  PHHHRSRSQP+H G GLAAR XXXXXXXXXXXXXXXXXXXXXXXXXX                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                           DGTAEE HRG I GSNA +N+PLRGSPSPRV DKK SGGSSSKRFGGGAXXXXXXXXXXXXX     XXX           CSSSDVS+SSCGDMTISSEEQE EEMAYTG
Sbjct:   23 EALEADFLEDDPSLANAADVTEFGTGYRPLHYAAYGGFLGVCEALHAAGARPLAAGDNGVTALFLAAQAGKADVVRFLLGLGADPTARERESGLCAMDVASESDPEVFRQMQEKGGFEVPPAPEVPPTVTRVEPTSLQVAYLPFPEASGQLPVTRYKVKVEHPGE--SSNQAAQAPDIAXXXXXXXXXXXXXXX-NIPLDVDGVEGAENA-RAPPAAD-PDAGGDDSSFANPTLSKVVLVPSAGETNSASEGGRQKRTLVAVRGLRPATRYRVKVAAINALGFGPYGPPSDAVVLPEKIEGEXXXXXXXXTRENGSSVGAERAKKGKGRQVLAREKRRSMAAQAVRLQEQQLLEAXXXXXXXXXXXXXXXPQGSSTAKVSGRQRLAATVGGDYCGRHNGGVGAGGDGRE-PLLTESSDVPHHHRSRSQPKHGGAGLAARXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVKAGHRGSAAGGLRRQADERSRRGRGERPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGTAEERHRGCITGSNARENRPLRGSPSPRVDDKKVSGGSSSKRFGGGAXXXXXXXXXXXXXAAGRRXXXXXXXXXXXXXXCSSSDVSISSCGDMTISSEEQEDEEMAYTG 698
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1419.3059.1 vs. uniprot
Match: A0A6H5KBJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ1_9PHAE)

HSP 1 Score: 532 bits (1371), Expect = 2.130e-174
Identity = 314/446 (70.40%), Postives = 334/446 (74.89%), Query Frame = 1 
Query:   34 LTQDFLEDDPSLANAVDATEFGTGYRPLHYAAYGGFLGVCEALHAAGARPLAAGDNGVTALFLAAQAGKADVVRFLLDLGADPTARERESGLCAMDVASESDPDVFRQMQEKGGFEVPPAPEVPPMVTRIESSSLQ---------------------------------VAYLPFPEASGQLPVTRYKVKVEHLGDDNSSNQAAQTPNAXXXXXXXXXXXXXXASSNIPFDVDGAEGAENAPRVPPAADDPDACGDDNGFANPTLSKVVLVPSAGGTNSTAEGVRQKRTFVTVKGLKPATRYRVKVAAINALGFGPYGPPSAAVMLPEKTEGXXXXXXXXTAKEHESSVGAERAKKGKGRQVLAREKRRSMAAQAARLQXXXXXXXXXXXXXXXXXXXXXXXXXXNAKVSGRQQLAATAGGDY-GRHTGGVGAGGDGRERILLTES 1269
            L Q+FLEDDP LANA D TEFGTGYRPLHYAAYGGFLGVCEALHAAGARPLAAGDNGVTALFLAAQAGK DVVRFLL LGADPTARERESGLCAMDVASESDPDVFRQMQEKGGFEVPPAPEVPP VTR+ES+SLQ                                 VAYLPFPEASGQLPVT YKVKVEH  D  SSNQAAQ P+               ++SNIP +VDG EGA NA R  PAAD PDA GDD+ FANPTLSKVVLVPS G TNS +EG RQKRT VTV+GL+PATRYRVKVAAINALGFGPYGPPS AV+LPE+TEGXXXXXXX T +E+ SSVGAERAKKGKGRQVLAREKRRSMAAQAARL+                           A+VSGRQQLAATAGGDY GRH GG+ AGGDGR+R+L   S
Sbjct:  153 LVQEFLEDDPRLANAADVTEFGTGYRPLHYAAYGGFLGVCEALHAAGARPLAAGDNGVTALFLAAQAGKGDVVRFLLGLGADPTARERESGLCAMDVASESDPDVFRQMQEKGGFEVPPAPEVPPTVTRVESASLQAVQRAPQPTASARDRPLFLLLHTFFPSSTNRSKVAYLPFPEASGQLPVTHYKVKVEHPAD--SSNQAAQAPDITEAANTYNVHNTT-STSNIPLNVDGTEGAGNA-RASPAAD-PDAGGDDSSFANPTLSKVVLVPSVGDTNSASEGGRQKRTLVTVRGLRPATRYRVKVAAINALGFGPYGPPSEAVVLPEETEGXXXXXXXTTTRENGSSVGAERAKKGKGRQVLAREKRRSMAAQAARLEKQQLLEAKERQQRRRAQIQGQQHGSTTAEVSGRQQLAATAGGDYCGRHNGGIDAGGDGRKRLLTGSS 593
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1419.3059.1 vs. uniprot
Match: A0A835Z5M3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.280e-15
Identity = 62/170 (36.47%), Postives = 82/170 (48.24%), Query Frame = 1 
Query:   34 LTQDFLEDDPSLANAVDATEFGTGYRPLHYAAYGGFLGVCEALHAAGARPLAAGDNGVTALFLAAQAGKADVVRFLLDLGADPTARERESGLCAMDVASESDPDVFRQMQEKGGFEVPPAPEVPPMVTRIESSSLQVAYLPFPEASGQLPVTRYKVKVEHLGDDNSSNQA 543
            L + F+  D  +ANA D TE+G+G RPLHYAAY        AL  AGA+  A  + G +ALF A Q G+ADV  +LL  GAD T  ER +G  A+D+A                                    L V + P  +A  QLPV RY++KV  +G  ++ N A
Sbjct:  194 LVRQFVSADAQMANAPDNTEYGSGMRPLHYAAYQ----ASAALVTAGAKVNALTEEGCSALFFAVQQGRADVAAWLLSEGADVTCCERGTGYTALDIAR-----------------------------------LLVEFEPLADARDQLPVRRYRLKVVEVGGSDADNNA 324
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1419.3059.1 vs. uniprot
Match: A0A8J2SCL8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCL8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.150e-10
Identity = 68/184 (36.96%), Postives = 92/184 (50.00%), Query Frame = 1 
Query:   64 SLANAVDATEFGTGYRPLHYAAYGGFLGVCEALHAAGARPLAAGDNGVTALFLAAQAGKADVVRFLL--DLGADPTARER--ESG----LCAMDVASESDP----------DVFRQMQEKGGFEVPPAPEVPPMVTRIESSSLQVAYLP--FPEASGQL---PVTRYKVKVEHLGDDNSSNQAA 546
            + AN VD++EFG GYRP+HYAAY G   V   L   GARP    + G T LFLAAQ GKA VV  L   D G D T +    ++G    LC +DV   +D           D   +  +K     PPAP    ++T  E   L+V++ P  +   +G L   PV   K+K+  +  DN ++ AA
Sbjct:  137 AAANLVDSSEFGEGYRPIHYAAYAGHHEVVALLLNNGARPGEKNEAGCTPLFLAAQQGKAAVVETLRRNDPGFDVTRKRDWVDAGDGRYLCPLDVCRPADGKRVPSRAATRDALMEGLDKIDVRPPPAP----LLTVSEHGGLEVSWTPDHYEVQTGGLDAPPVHALKIKI--VPSDNGADPAA 314
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1419.3059.1 vs. uniprot
Match: F0Y4Z2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4Z2_AURAN)

HSP 1 Score: 74.7 bits (182), Expect = 4.800e-10
Identity = 67/177 (37.85%), Postives = 79/177 (44.63%), Query Frame = 1 
Query:   70 ANAVDATEFGTGYRPLHYAAYGGFLGVCEALHAAGARPLAAGDNGVTALFLAAQAGKADVVRFLLDLGADPTARERES--------GLCAMDVASESDPDVFRQ-------MQEKGGFEV--PPAPEVPPM--------VTRIESSSLQVAYLPFPEASGQLPVTRY-KVKVEHLGD 522
            ANA+D +EFG GYRPLHYAAY G   V E L  AGAR       G T LFLAAQ G+  VVR L D         R           LCA+DVA  +D  V  +       +   GG     PPAP + P            +E++    AY P P A    P   + KVKV    D
Sbjct:  140 ANALDDSEFGEGYRPLHYAAYAGHAQVVEVLLEAGARVDERNAAGCTPLFLAAQQGRGAVVRLLYDRDPATNCASRHELVPTGDGRMLCALDVARAADRRVAGRDDARTVMLDALGGRRAATPPAPALVPCDDPDAGASAGGLEATWAADAYAPAPGAPRDFPPVHHAKVKVLRADD 316
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1419.3059.1 vs. uniprot
Match: A0A1V9Z5P0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5P0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 5.260e-10
Identity = 56/159 (35.22%), Postives = 86/159 (54.09%), Query Frame = 1 
Query:   49 LEDDPSLANAVDATEFGTGYRPLHYAAYGGFLGVCEALHAAGARPLAAGDNGVTALFLAAQAGKADVVRFLLDLGADPTARERESGLCAMDVASESDP-DVFRQMQEKGGFEVPPAPEVPPMVTRIESSSLQVAYLP-FPEASGQLPVTRYKVKVEHLG 519
            L + P   +  D TE+G    PLHYAAY G L +C+ L    A+  A    G T LF AAQ  + +VV++LL+ GAD  A+ RES + A+DV S     D+F+ ++ +      P+P   P  T +  +S+ +A+     + +  LP++ +KVKV   G
Sbjct:  122 LLEQPDAVHDRDITEYGDMNSPLHYAAYTGSLPLCQLLVQHKAKVNATNALGCTPLFFAAQQERLEVVKYLLEQGAD--AKIRESEMSAVDVTSSMAVLDLFKAIKGEK-----PSPPQRPEATAVRPTSITIAWATGASKLNESLPISGFKVKVVAAG 273
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1419.3059.1 vs. uniprot
Match: A0A1W0A871_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A871_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.650e-9
Identity = 55/169 (32.54%), Postives = 90/169 (53.25%), Query Frame = 1 
Query:   34 LTQDFLEDDPSLANAVDATEFGTGYRPLHYAAYGGFLGVCEALHAAGARPLAAGDNGVTALFLAAQAGKADVVRFLLDLGADPTARERESGLCAMDVASESDP-DVFRQMQEKGGFEVPPAPEVPPMVTRIESSSLQVAYLP--FPEASGQ----LPVTRYKVKVEHLG 519
            + +  LE+D  + N  D+TEFG    PLHYAAY G L +C+ L    A+  A   +G T LF A+Q  K +VV++LL+ GAD   RE E     +DVAS     ++F+ ++           + P +  R+E++ ++   +   + EA+ +    LP++ +K+KV   G
Sbjct:  132 VVERLLEND--VVNERDSTEFGDMNSPLHYAAYKGNLPLCKLLINNKAKVNATNASGCTPLFFASQQEKEEVVKYLLEQGADAKLREAEHQFSPVDVASSIQILEIFKSIRG----------DKPSLPQRLEAADIKPTSITITWAEAAAKINQALPISGFKIKVTQYG 288
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1419.3059.1 vs. uniprot
Match: A0A7S1C330_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C330_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.290e-6
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   34 LTQDFLEDDPSLANAVDATEFGTGYRPLHYAAYGGFLGVCEALHAAGARPLAAGDNG 204
            + Q FL+ DPSLA A DAT+FG G  PLHYAAY G L  CE L A GA   A  D G
Sbjct:  125 VLQTFLDADPSLATARDATDFGEGNTPLHYAAYNGHLEACEVLLANGADIDATNDAG 181
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1419.3059.1 vs. uniprot
Match: A0A0D7KEX7_9BURK (Ankyrin n=3 Tax=Acidovorax TaxID=12916 RepID=A0A0D7KEX7_9BURK)

HSP 1 Score: 55.1 bits (131), Expect = 9.240e-5
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:   76 AVDATEFGTGYRPLHYAAYGG---FLGVCEALHAAGARPLAAGDNGVTALFLAAQAGKADVVRFLLDLGADPTARERESGLCAMDVA 327
            A DA    TG+ PLHYAA GG    L +   L    A   AA  NG T L +AAQ G A++V+FLLD GADP+ +  + GL A++ A
Sbjct:  112 ARDADVNKTGWAPLHYAASGGTEQHLRIAALLLENHAYIDAASPNGTTPLMMAAQYGSAEMVKFLLDEGADPSLKN-QLGLTAVNFA 197
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1419.3059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FR62_ECTSI1.710e-21574.34Chain D, Drug Export Pathway Of Multidrug Exporter... [more]
A0A6H5KBJ1_9PHAE2.130e-17470.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z5M3_9STRA2.280e-1536.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SCL8_9STRA2.150e-1036.96Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y4Z2_AURAN4.800e-1037.85Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1V9Z5P0_9STRA5.260e-1035.22Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1W0A871_9STRA2.650e-932.54Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S1C330_9STRA1.290e-657.89Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0D7KEX7_9BURK9.240e-545.98Ankyrin n=3 Tax=Acidovorax TaxID=12916 RepID=A0A0D... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1419contigE-fasciculatus_F_contig1419:7324..11545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog44056.XP_009035474.1
KEGG koko:K10380,ko:K21413
KEGG Pathwayko04624,ko05205,map04624,map05205
EggNOG free text desc.Ankyrin repeat and sterile alpha motif
EggNOG OGsCOG0666@1,KOG0507@2759,KOG4177@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons6
Model size2052
Cds size2052
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1419.3059.1prot_E-fasciculatus_F_contig1419.3059.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1419 7324..11545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927909.3077383-CDS-E-fasciculatus_F_contig1419:7323..82801622927909.3077383-CDS-E-fasciculatus_F_contig1419:7323..8280Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1419 7324..8280 -
1695995747.5167062-CDS-E-fasciculatus_F_contig1419:7323..82801695995747.5167062-CDS-E-fasciculatus_F_contig1419:7323..8280Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1419 7324..8280 -
1622927909.3305748-CDS-E-fasciculatus_F_contig1419:8663..88241622927909.3305748-CDS-E-fasciculatus_F_contig1419:8663..8824Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1419 8664..8824 -
1695995747.5298905-CDS-E-fasciculatus_F_contig1419:8663..88241695995747.5298905-CDS-E-fasciculatus_F_contig1419:8663..8824Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1419 8664..8824 -
1622927909.3502946-CDS-E-fasciculatus_F_contig1419:9230..93151622927909.3502946-CDS-E-fasciculatus_F_contig1419:9230..9315Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1419 9231..9315 -
1695995747.5414937-CDS-E-fasciculatus_F_contig1419:9230..93151695995747.5414937-CDS-E-fasciculatus_F_contig1419:9230..9315Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1419 9231..9315 -
1622927909.3688095-CDS-E-fasciculatus_F_contig1419:9857..102651622927909.3688095-CDS-E-fasciculatus_F_contig1419:9857..10265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1419 9858..10265 -
1695995747.5506744-CDS-E-fasciculatus_F_contig1419:9857..102651695995747.5506744-CDS-E-fasciculatus_F_contig1419:9857..10265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1419 9858..10265 -
1622927909.3835819-CDS-E-fasciculatus_F_contig1419:10625..107961622927909.3835819-CDS-E-fasciculatus_F_contig1419:10625..10796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1419 10626..10796 -
1695995747.5619934-CDS-E-fasciculatus_F_contig1419:10625..107961695995747.5619934-CDS-E-fasciculatus_F_contig1419:10625..10796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1419 10626..10796 -
1622927909.3954177-CDS-E-fasciculatus_F_contig1419:11275..115451622927909.3954177-CDS-E-fasciculatus_F_contig1419:11275..11545Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1419 11276..11545 -
1695995747.575039-CDS-E-fasciculatus_F_contig1419:11275..115451695995747.575039-CDS-E-fasciculatus_F_contig1419:11275..11545Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1419 11276..11545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1419.3059.1

>prot_E-fasciculatus_F_contig1419.3059.1 ID=prot_E-fasciculatus_F_contig1419.3059.1|Name=mRNA_E-fasciculatus_F_contig1419.3059.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=684bp
PNAEDPPSTQTLTQDFLEDDPSLANAVDATEFGTGYRPLHYAAYGGFLGV
CEALHAAGARPLAAGDNGVTALFLAAQAGKADVVRFLLDLGADPTARERE
SGLCAMDVASESDPDVFRQMQEKGGFEVPPAPEVPPMVTRIESSSLQVAY
LPFPEASGQLPVTRYKVKVEHLGDDNSSNQAAQTPNATDAANANNASNTA
TASSNIPFDVDGAEGAENAPRVPPAADDPDACGDDNGFANPTLSKVVLVP
SAGGTNSTAEGVRQKRTFVTVKGLKPATRYRVKVAAINALGFGPYGPPSA
AVMLPEKTEGEGEGEGSSTAKEHESSVGAERAKKGKGRQVLAREKRRSMA
AQAARLQEQQLLEAKERQQRRRAQSQEQQQGSSNAKVSGRQQLAATAGGD
YGRHTGGVGAGGDGRERILLTESSASPHHHRSRSQPRHDGVGLAARAAAK
TTPAQRAAEPPPSTAAAATAVPATNKAGHRGSAGGRRRQADERYRRGRGE
RPVTTTTTTTTTTGAAAEQRDRSGNDGPPGRRRLIATAPPLAADTTETPR
YLAATSAGRMSARAYRQRADGGGDGTAEESHRGRIAGSNAGDNQPLRGSP
SPRVADKKASGGSSSKRFGGGAGSGAGEGTGGGRGAGGRQRRRRPAAGEN
RGGCSSSDVSMSSCGDMTISSEEQEGEEMAYTG*
back to top

mRNA from alignment at E-fasciculatus_F_contig1419:7324..11545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1419.3059.1 ID=mRNA_E-fasciculatus_F_contig1419.3059.1|Name=mRNA_E-fasciculatus_F_contig1419.3059.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4222bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1419:7324..11545- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGAATGCTGAGGACCCCCCCTCCACTCAAACTTTGACCCAGGACTTCTT
GGAAGATGACCCCAGCCTGGCCAACGCCGTCGATGCCACGGAGTTCGGCA
CGGGGTACCGCCCGCTGCACTACGCCGCATACGGCGGGTTTCTCGGCGTT
TGCGAGGCGTTGCACGCCGCGGGGGCGCGGCCCCTGGCCGCCGGCGACAA
TGGAGTGACCGCCCTGTTCCTCGCCGCGCAGGCGGGCAAGGCCGACGTCG
TGCGGTTCCTGCTTGACCTGGTGAGCGAAACTATTCAAGTCTGAATCGTT
GTCGTTGTTTTTGTTTTTCCGTCTGTGCCTCGGTGCGCGTGTCCCCGGAC
GCACCCGTGCCCCCGATCGCGCGAAACGTGTAGTTGTTGCGTCGCGGACA
AAGACAGGTAGATATCGGCACAGGTTTCAGTGTGGGCCCTGTGCGTCGCG
GTTGTTTCGTGAAGCAGAGCGCGGACACGAAGAGGTAGCTTCCCGGACGG
AAGAAACGCTAGGAGATCCCACCCGACAACGTACTTTGCTTCACACGGCT
GTGGTGCTTTCGGTACTGTATCGTACAGTAGTACGATCTGCTCCCCGCAT
GAACACCCTTCTACGTATCTGCCCTCCTCCCTGGCCCCCTCCCGCATTCC
GCACCTTCCTCTGTGCTCGTAACGTCCGCCCCCATCCATCCATCCCTCCC
TCCCTCCTTCCATTATCTTCCTCCCGACGTGGCGCCGACGGAAAAAAAGG
GCGCGGACCCGACCGCACGGGAGCGGGAGAGCGGACTCTGCGCCATGGAC
GTGGCGAGCGAGTCTGATCCCGACGTCTTCCGGCAGATGCAGGAGAAGGG
CGGCTTCGAGGTGCCCCCGGCGCCCGAGGTTCCGCCGATGGTGACCCGGA
TAGAGTCATCGTCGCTGCAGGTACGCTTGGTGTACCACCATGCGTTTTCT
GTTTTTGCGGAAGGAAAGGGATTGTTTCTGGGTACACTTTCGTTCTTTCA
AGGGTAGCGCTGCAGCTTGGTGATAGATCGGCCACCTTACCCACAGGAAA
CGATGACAATTTTGGTCGATCACACTGATGTTCTCTTGAGTTATGTGCTT
GGCAAGAGGGCAGAATCCGTACCACTCCCGGAAACAACAAGTGTTCTTGC
AGATCAACGAAACATGTTCATAGAGCATAGGCGGTACAAAGAGCGCCACT
ATCAACCGCGAGCGCTCGAGATCACCCCCATCCACCTGCTTTTTCAAACC
CTCTTCCCGTCGTCGACCAATCGACCCAAGGTGGCATACCTACCGTTCCC
CGAGGCTAGCGGCCAGCTCCCGGTAACTCGTTACAAGGTCAAGGTCGAGC
ACCTCGGCGACGACAACAGCTCGAACCAGGCGGCCCAAACACCAAACGCC
ACCGACGCAGCTAACGCCAACAACGCAAGCAACACCGCCACCGCCAGCAG
CAACATCCCGTTCGACGTTGACGGGGCAGAGGGGGCAGAAAACGCGCCTC
GCGTGCCCCCCGCAGCTGACGACCCGGACGCCTGCGGGGACGACAACGGC
TTCGCGAACCCGACGCTGTCGAAGGTGGTGCTGGTTCCCTCGGCGGGGGG
AACAAACTCCACGGCCGAAGGGGTGCGGCAGAAGCGAACGTTCGTGACGG
TCAAGGGCTTGAAGCCGGCAACGCGCTACAGAGTGAAGGTCTGTCTGCCT
GGGTGAAAGGTCGAGCGAGGGGGGAGCTTCCCTTCCATTGTAGTCAGTCC
TCTTTTTCGTGGCTGAGCCGTGCCGGCCGTGTAGCGGTAAAGGCTGACCA
GGCGATACAGGCAAACGACGTCTCTCGGGAGGGGTGCACATGTGCGGGGG
GGGTGCTTCCCAATTGCGCAAAAAAGTCGGAGTGTTCAAAGGGCTTGCAA
GACTGTCTGGGCGACTGCGGAGTGTTCCTATTGCCGATTTTTGAGCCCCC
GCTACATGTGTAAGTGTAAACATAGTAGGTTTATCGTTCTGATTAGTTCA
ACGATTTTTCGGTCAGAGAACGGCGCAGCGTTGGAGCGACAGTTTTTGCG
AGAGACTGATACTCCGTATGTCAGCATTGCGGTCGTCGTCTTCACCAACA
AAACCTGTGGGCTGCAACGATACATGCTACTGGACGCAATTGTTTTTATA
CAGCTTTCAACACATGAGAACATCTGCTAAGAACTTTTCCTCGTCATCTT
CTTGCTTTCGTCACACACACACCCTCGCAGGTTGCAGCGATTAACGCCCT
CGGATTCGGACCGTACGGCCCACCGTCAGCAGCGGTCATGCTGCCGGAGA
AGACAGAAGGGGAGGGTGAGTCAGAGCCGTCGCCCAAAGGAACTGATTAG
GTCAAGGGGAGAGAGGGGGGGGGGGGGGGGCGTGGTCTCCGGATTGCCGA
CACGCCTCCGTTGGTTTGCGGCCTCGAGTCGGCCAAACAGCCCTTTACTG
ATGAGAAAGACTACCCGTTCGAGGTATAACCACAATCTATGCCAGCTTTG
AGAGAGACATGCAGAAGTATTCTCGTTGGAGAAACAAGATATTATTGGCC
GAGTTCTTACGTGCAAGCAAGTTGGACGCGGTGTGCAGCCAGTGCACCAC
GCATCTACGCACATAGTGGTCTCGAAATTGCAATCTGCACCGGGGGCACG
GTCGGCGCTAGAGCGGGGGAGATGCTTTGTCAAGCTAACACCTAAGTGGA
CGACTCCATGTGCTGGACCAGGTGAAGGTGAAGGCAGCAGCACGGCCAAA
GAGCACGAGTCTTCAGTGGGAGCGGAAAGGGCCAAGAAGGGCAAGGGGAG
GCAAGTGCTTGCAAGGGAGAAGCGGCGGAGCATGGCGGCGCAGGCCGCGC
GTCTTCAGGAGCAGCAGCTGCTGGAGGCGAAGGTAACGGAAACGAAGACA
ATACGAATGCTTCACCCAGTGACCCTGGGTAGTTGGCCTGTGAGTTTTCT
TTCGCAGAGTGCCGCAAAGTGCGAGAGTGACCGAACCCTCCAGAGAATGC
GCCTTGCATTGTGGAACGGAAGTCGGGATCGTAAGTTAGGCCGCCGGCGA
CGCCAAAGCGGGTGGCGTACGCAAAAAATCCGCAGTCGTCTCCGAATAGT
CTCTTAATGCCATCCCTGAGATGCGCTCAACACAGCGGTAGCTTGCGGTC
GGTATTGCAACGGCGCTGGGTTTGGTAGAACAAAAAACGATCCGGTTCGG
GAGCGTTTGGCCATTTCTCATGAGAGCTGCCACCGACCAACCGACTGCAA
TTTTGGCGTTTGCAGGAGAGACAACAGCGCCGACGAGCACAAAGTCAAGA
GCAGCAGCAGGGGAGCAGCAACGCCAAGGTCTCCGGTCGGCAACAGCTTG
CTGCCACGGCGGGCGGCGACTACGGCCGTCACACCGGCGGCGTAGGCGCT
GGGGGCGATGGCCGCGAACGCATCCTCCTCACGGAAAGCTCCGCTTCCCC
CCACCATCACCGCTCCCGCTCCCAACCAAGACACGACGGCGTGGGACTCG
CCGCGCGAGCAGCGGCGAAGACGACGCCGGCGCAACGAGCGGCGGAACCA
CCACCATCAACGGCGGCGGCAGCAACAGCAGTGCCGGCTACCAACAAAGC
CGGCCACCGAGGATCGGCCGGCGGGCGTCGCCGGCAAGCTGACGAGAGGT
ACCGGAGGGGACGGGGGGAAAGACCCGTCACAACAACAACAACAACAACA
ACAACAACCGGAGCTGCTGCCGAACAACGGGATCGAAGCGGCAACGACGG
CCCTCCGGGACGCAGAAGGCTGATCGCCACCGCGCCCCCCCTTGCGGCGG
ATACGACGGAGACCCCCCGGTACCTGGCGGCGACCTCGGCCGGCAGGATG
TCCGCCCGGGCCTACCGCCAGCGGGCCGACGGCGGTGGTGACGGTACCGC
CGAGGAGTCGCATCGGGGGCGTATCGCCGGCAGCAACGCCGGAGATAATC
AGCCGTTACGAGGATCGCCGTCTCCGCGTGTCGCTGACAAGAAGGCGTCC
GGTGGTTCAAGTTCGAAGAGGTTCGGGGGCGGCGCCGGCAGCGGCGCCGG
TGAGGGGACGGGAGGGGGGCGGGGGGCGGGGGGTCGGCAACGGCGGCGAC
GGCCGGCGGCGGGAGAAAACCGGGGCGGGTGCTCGTCGTCGGACGTGTCG
ATGTCTTCGTGCGGTGACATGACTATATCAAGCGAAGAACAGGAGGGCGA
AGAGATGGCGTACACCGGCTAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1419:7324..11545-

>mRNA_E-fasciculatus_F_contig1419.3059.1 ID=mRNA_E-fasciculatus_F_contig1419.3059.1|Name=mRNA_E-fasciculatus_F_contig1419.3059.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4104bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1419:7324..11545- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGAATGCTGAGGACCCCCCCTCCACTCAAACTTTGACCCAGGACTTCTT
GGAAGATGACCCCAGCCTGGCCAACGCCGTCGATGCCACGGAGTTCGGCA
CGGGGTACCGCCCGCTGCACTACGCCGCATACGGCGGGTTTCTCGGCGTT
TGCGAGGCGTTGCACGCCGCGGGGGCGCGGCCCCTGGCCGCCGGCGACAA
TGGAGTGACCGCCCTGTTCCTCGCCGCGCAGGCGGGCAAGGCCGACGTCG
TGCGGTTCCTGCTTGACCTGCCGAATGCTGAGGACCCCCCCTCCACTCAA
ACTTTGACCCAGGACTTCTTGGAAGATGACCCCAGCCTGGCCAACGCCGT
CGATGCCACGGAGTTCGGCACGGGGTACCGCCCGCTGCACTACGCCGCAT
ACGGCGGGTTTCTCGGCGTTTGCGAGGCGTTGCACGCCGCGGGGGCGCGG
CCCCTGGCCGCCGGCGACAATGGAGTGACCGCCCTGTTCCTCGCCGCGCA
GGCGGGCAAGGCCGACGTCGTGCGGTTCCTGCTTGACCTGGGCGCGGACC
CGACCGCACGGGAGCGGGAGAGCGGACTCTGCGCCATGGACGTGGCGAGC
GAGTCTGATCCCGACGTCTTCCGGCAGATGCAGGAGAAGGGCGGCTTCGA
GGTGCCCCCGGCGCCCGAGGTTCCGCCGATGGTGACCCGGATAGAGTCAT
CGTCGCTGCAGGGCGCGGACCCGACCGCACGGGAGCGGGAGAGCGGACTC
TGCGCCATGGACGTGGCGAGCGAGTCTGATCCCGACGTCTTCCGGCAGAT
GCAGGAGAAGGGCGGCTTCGAGGTGCCCCCGGCGCCCGAGGTTCCGCCGA
TGGTGACCCGGATAGAGTCATCGTCGCTGCAGGTGGCATACCTACCGTTC
CCCGAGGCTAGCGGCCAGCTCCCGGTAACTCGTTACAAGGTCAAGGTCGA
GCACCTCGGCGACGACAACAGCTCGAACCAGGCGGCCCAAACACCAAACG
CCACCGACGCAGCTAACGCCAACAACGCAAGCAACACCGCCACCGCCAGC
AGCAACATCCCGTTCGACGTTGACGGGGCAGAGGGGGCAGAAAACGCGCC
TCGCGTGCCCCCCGCAGCTGACGACCCGGACGCCTGCGGGGACGACAACG
GCTTCGCGAACCCGACGCTGTCGAAGGTGGTGCTGGTTCCCTCGGCGGGG
GGAACAAACTCCACGGCCGAAGGGGTGCGGCAGAAGCGAACGTTCGTGAC
GGTCAAGGGCTTGAAGCCGGCAACGCGCTACAGAGTGAAGGTGGCATACC
TACCGTTCCCCGAGGCTAGCGGCCAGCTCCCGGTAACTCGTTACAAGGTC
AAGGTCGAGCACCTCGGCGACGACAACAGCTCGAACCAGGCGGCCCAAAC
ACCAAACGCCACCGACGCAGCTAACGCCAACAACGCAAGCAACACCGCCA
CCGCCAGCAGCAACATCCCGTTCGACGTTGACGGGGCAGAGGGGGCAGAA
AACGCGCCTCGCGTGCCCCCCGCAGCTGACGACCCGGACGCCTGCGGGGA
CGACAACGGCTTCGCGAACCCGACGCTGTCGAAGGTGGTGCTGGTTCCCT
CGGCGGGGGGAACAAACTCCACGGCCGAAGGGGTGCGGCAGAAGCGAACG
TTCGTGACGGTCAAGGGCTTGAAGCCGGCAACGCGCTACAGAGTGAAGGT
TGCAGCGATTAACGCCCTCGGATTCGGACCGTACGGCCCACCGTCAGCAG
CGGTCATGCTGCCGGAGAAGACAGAAGGGGAGGGTTGCAGCGATTAACGC
CCTCGGATTCGGACCGTACGGCCCACCGTCAGCAGCGGTCATGCTGCCGG
AGAAGACAGAAGGGGAGGGTGAAGGTGAAGGCAGCAGCACGGCCAAAGAG
CACGAGTCTTCAGTGGGAGCGGAAAGGGCCAAGAAGGGCAAGGGGAGGCA
AGTGCTTGCAAGGGAGAAGCGGCGGAGCATGGCGGCGCAGGCCGCGCGTC
TTCAGGAGCAGCAGCTGCTGGAGGCGAAGGTGAAGGTGAAGGCAGCAGCA
CGGCCAAAGAGCACGAGTCTTCAGTGGGAGCGGAAAGGGCCAAGAAGGGC
AAGGGGAGGCAAGTGCTTGCAAGGGAGAAGCGGCGGAGCATGGCGGCGCA
GGCCGCGCGTCTTCAGGAGCAGCAGCTGCTGGAGGCGAAGGAGAGACAAC
AGCGCCGACGAGCACAAAGTCAAGAGCAGCAGCAGGGGAGCAGCAACGCC
AAGGTCTCCGGTCGGCAACAGCTTGCTGCCACGGCGGGCGGCGACTACGG
CCGTCACACCGGCGGCGTAGGCGCTGGGGGCGATGGCCGCGAACGCATCC
TCCTCACGGAAAGCTCCGCTTCCCCCCACCATCACCGCTCCCGCTCCCAA
CCAAGACACGACGGCGTGGGACTCGCCGCGCGAGCAGCGGCGAAGACGAC
GCCGGCGCAACGAGCGGCGGAACCACCACCATCAACGGCGGCGGCAGCAA
CAGCAGTGCCGGCTACCAACAAAGCCGGCCACCGAGGATCGGCCGGCGGG
CGTCGCCGGCAAGCTGACGAGAGGTACCGGAGGGGACGGGGGGAAAGACC
CGTCACAACAACAACAACAACAACAACAACAACCGGAGCTGCTGCCGAAC
AACGGGATCGAAGCGGCAACGACGGCCCTCCGGGACGCAGAAGGCTGATC
GCCACCGCGCCCCCCCTTGCGGCGGATACGACGGAGACCCCCCGGTACCT
GGCGGCGACCTCGGCCGGCAGGATGTCCGCCCGGGCCTACCGCCAGCGGG
CCGACGGCGGTGGTGACGGTACCGCCGAGGAGTCGCATCGGGGGCGTATC
GCCGGCAGCAACGCCGGAGATAATCAGCCGTTACGAGGATCGCCGTCTCC
GCGTGTCGCTGACAAGAAGGCGTCCGGTGGTTCAAGTTCGAAGAGGTTCG
GGGGCGGCGCCGGCAGCGGCGCCGGTGAGGGGACGGGAGGGGGGCGGGGG
GCGGGGGGTCGGCAACGGCGGCGACGGCCGGCGGCGGGAGAAAACCGGGG
CGGGTGCTCGTCGTCGGACGTGTCGATGTCTTCGTGCGGTGACATGACTA
TATCAAGCGAAGAACAGGAGGGCGAAGAGATGGCGTACACCGGCTAGGAG
AGACAACAGCGCCGACGAGCACAAAGTCAAGAGCAGCAGCAGGGGAGCAG
CAACGCCAAGGTCTCCGGTCGGCAACAGCTTGCTGCCACGGCGGGCGGCG
ACTACGGCCGTCACACCGGCGGCGTAGGCGCTGGGGGCGATGGCCGCGAA
CGCATCCTCCTCACGGAAAGCTCCGCTTCCCCCCACCATCACCGCTCCCG
CTCCCAACCAAGACACGACGGCGTGGGACTCGCCGCGCGAGCAGCGGCGA
AGACGACGCCGGCGCAACGAGCGGCGGAACCACCACCATCAACGGCGGCG
GCAGCAACAGCAGTGCCGGCTACCAACAAAGCCGGCCACCGAGGATCGGC
CGGCGGGCGTCGCCGGCAAGCTGACGAGAGGTACCGGAGGGGACGGGGGG
AAAGACCCGTCACAACAACAACAACAACAACAACAACAACCGGAGCTGCT
GCCGAACAACGGGATCGAAGCGGCAACGACGGCCCTCCGGGACGCAGAAG
GCTGATCGCCACCGCGCCCCCCCTTGCGGCGGATACGACGGAGACCCCCC
GGTACCTGGCGGCGACCTCGGCCGGCAGGATGTCCGCCCGGGCCTACCGC
CAGCGGGCCGACGGCGGTGGTGACGGTACCGCCGAGGAGTCGCATCGGGG
GCGTATCGCCGGCAGCAACGCCGGAGATAATCAGCCGTTACGAGGATCGC
CGTCTCCGCGTGTCGCTGACAAGAAGGCGTCCGGTGGTTCAAGTTCGAAG
AGGTTCGGGGGCGGCGCCGGCAGCGGCGCCGGTGAGGGGACGGGAGGGGG
GCGGGGGGCGGGGGGTCGGCAACGGCGGCGACGGCCGGCGGCGGGAGAAA
ACCGGGGCGGGTGCTCGTCGTCGGACGTGTCGATGTCTTCGTGCGGTGAC
ATGACTATATCAAGCGAAGAACAGGAGGGCGAAGAGATGGCGTACACCGG
CTAG
back to top