mRNA_E-fasciculatus_F_contig14150.3043.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14150.3043.1
Unique NamemRNA_E-fasciculatus_F_contig14150.3043.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14150.3043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14150contigE-fasciculatus_F_contig14150:7..593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size587
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14150.3043.1prot_E-fasciculatus_F_contig14150.3043.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14150 27..464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927906.9175863-UTR-E-fasciculatus_F_contig14150:6..261622927906.9175863-UTR-E-fasciculatus_F_contig14150:6..26Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14150 7..26 +
1695995746.703229-UTR-E-fasciculatus_F_contig14150:6..261695995746.703229-UTR-E-fasciculatus_F_contig14150:6..26Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14150 7..26 +
1622927906.954135-UTR-E-fasciculatus_F_contig14150:464..5931622927906.954135-UTR-E-fasciculatus_F_contig14150:464..593Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14150 465..593 +
1695995746.7209315-UTR-E-fasciculatus_F_contig14150:464..5931695995746.7209315-UTR-E-fasciculatus_F_contig14150:464..593Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14150 465..593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927906.935221-CDS-E-fasciculatus_F_contig14150:26..4641622927906.935221-CDS-E-fasciculatus_F_contig14150:26..464Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14150 27..464 +
1695995746.7122784-CDS-E-fasciculatus_F_contig14150:26..4641695995746.7122784-CDS-E-fasciculatus_F_contig14150:26..464Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14150 27..464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14150.3043.1

>prot_E-fasciculatus_F_contig14150.3043.1 ID=prot_E-fasciculatus_F_contig14150.3043.1|Name=mRNA_E-fasciculatus_F_contig14150.3043.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=146bp
MDAKMWGGNKTGTRRWPNITRMLFERRRRARLKIQQWGGLFNASCIVFVV
LGAFGEHRRNNQVLELGTAPVNFWAHISAPNKGLYCVQQTFFSHSLQSVP
SSPTHFKASPLPSCRLLLQCLHMCKLVHLQAFNLAGGKERILLPD*
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mRNA from alignment at E-fasciculatus_F_contig14150:7..593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14150.3043.1 ID=mRNA_E-fasciculatus_F_contig14150.3043.1|Name=mRNA_E-fasciculatus_F_contig14150.3043.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=587bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14150:7..593+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCGGTTTTACCACGACTGGATGGATGCCAAGATGTGGGGGGGGAACAAG
ACGGGAACCCGCCGGTGGCCGAACATCACCAGGATGTTATTCGAAAGGAG
AAGAAGAGCCAGACTTAAAATACAACAGTGGGGGGGGCTGTTCAATGCCA
GTTGTATAGTGTTCGTCGTGCTTGGTGCTTTCGGCGAGCACAGACGGAAT
AACCAAGTCCTTGAGCTTGGAACAGCGCCGGTGAATTTCTGGGCACACAT
ATCGGCACCAAACAAGGGCCTGTACTGCGTCCAGCAGACCTTCTTCTCCC
ACTCACTTCAAAGCGTCCCCTCTTCTCCCACTCACTTCAAAGCGTCCCCT
CTTCCTTCGTGTAGACTATTGCTTCAGTGCTTGCACATGTGCAAGCTTGT
GCATTTACAAGCATTTAATTTAGCCGGAGGCAAGGAGAGGATTCTTCTGC
CGGACTGACGGTTTCGCCTTCATTATTTCCGGCCGACGAGAGGTGAGCTG
TTGTACCGCCAAAAACATTTTCCTAACAAACGACAGCAACAGCAACAGCA
CCAGCACCAGCGCCAGCACCAGCACCGTGTGTCATCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14150:7..593+

>mRNA_E-fasciculatus_F_contig14150.3043.1 ID=mRNA_E-fasciculatus_F_contig14150.3043.1|Name=mRNA_E-fasciculatus_F_contig14150.3043.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14150:7..593+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATGCCAAGATGTGGGGGGGGAACAAGACGGGAACCCGCCGGTGGCC
GAACATCACCAGGATGTTATTCGAAAGGAGAAGAAGAGCCAGACTTAAAA
TACAACAGTGGGGGGGGCTGTTCAATGCCAGTTGTATAGTGTTCGTCGTG
CTTGGTGCTTTCGGCGAGCACAGACGGAATAACCAAGTCCTTGAGCTTGG
AACAGCGCCGGTGAATTTCTGGGCACACATATCGGCACCAAACAAGGGCC
TGTACTGCGTCCAGCAGACCTTCTTCTCCCACTCACTTCAAAGCGTCCCC
TCTTCTCCCACTCACTTCAAAGCGTCCCCTCTTCCTTCGTGTAGACTATT
GCTTCAGTGCTTGCACATGTGCAAGCTTGTGCATTTACAAGCATTTAATT
TAGCCGGAGGCAAGGAGAGGATTCTTCTGCCGGACTGAATGGATGCCAAG
ATGTGGGGGGGGAACAAGACGGGAACCCGCCGGTGGCCGAACATCACCAG
GATGTTATTCGAAAGGAGAAGAAGAGCCAGACTTAAAATACAACAGTGGG
GGGGGCTGTTCAATGCCAGTTGTATAGTGTTCGTCGTGCTTGGTGCTTTC
GGCGAGCACAGACGGAATAACCAAGTCCTTGAGCTTGGAACAGCGCCGGT
GAATTTCTGGGCACACATATCGGCACCAAACAAGGGCCTGTACTGCGTCC
AGCAGACCTTCTTCTCCCACTCACTTCAAAGCGTCCCCTCTTCTCCCACT
CACTTCAAAGCGTCCCCTCTTCCTTCGTGTAGACTATTGCTTCAGTGCTT
GCACATGTGCAAGCTTGTGCATTTACAAGCATTTAATTTAGCCGGAGGCA
AGGAGAGGATTCTTCTGCCGGACTGA
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