mRNA_E-fasciculatus_F_contig14136.3030.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14136.3030.1
Unique NamemRNA_E-fasciculatus_F_contig14136.3030.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14136.3030.1 vs. uniprot
Match: D7FYX1_ECTSI (PCIF1_WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX1_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 7.400e-51
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    1 KGGGFQASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFADTDGPFGSVGSFFDFQPTEGAYEANPPFVRDVILKMANHMDALL 264
            +GGGFQASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAF DTDGPFGS GSFFDFQPT+GAYEANPPFVRDVILKMANHMD LL
Sbjct:  281 QGGGFQASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFPDTDGPFGSAGSFFDFQPTQGAYEANPPFVRDVILKMANHMDGLL 368
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BLAST of mRNA_E-fasciculatus_F_contig14136.3030.1 vs. uniprot
Match: A0A6H5LQ06_9PHAE (PCIF1_WW domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ06_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.010e-38
Identity = 73/97 (75.26%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:   16 QASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFADTDGPFGSVG--------------SFFDFQPTEGAYEANPPFVRDVILKMANHMDALL 264
            QASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAF DTDGPFG  G              SF    PTEGAY+ANPPFVRDVILKMA HMD LL
Sbjct:  363 QASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFPDTDGPFGRCGRNAFPTACWKQQCVSFLLSPPTEGAYQANPPFVRDVILKMATHMDGLL 459
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BLAST of mRNA_E-fasciculatus_F_contig14136.3030.1 vs. uniprot
Match: D0NY28_PHYIT (PCIF1_WW domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NY28_PHYIT)

HSP 1 Score: 131 bits (330), Expect = 2.400e-35
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    4 GGGFQASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFADTDGPFGSVGSFFDFQPTEGAYEANPPFVRDVILKMANHMDALL 264
            GGGFQA++  + FDVLLK F  +MECFASP NCRYSR+CSAF DTD  FGSVGSFFDF P  G +EANPPF+  VI +MA+HM ALL
Sbjct:  142 GGGFQAALNEECFDVLLKEFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALL 228
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BLAST of mRNA_E-fasciculatus_F_contig14136.3030.1 vs. uniprot
Match: A0A7S2V310_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V310_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.180e-34
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 KGGGFQASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFADTDGPFGSVGSFFDFQPTEGAYEANPPFVRDVILKMANHM 252
            +GGGFQA++ G  FDVLL+ F  RME FASPFN RYSR+CSAF DTD  FGS+GSFFDF P EGAYE NPPFV +V+ + A HM
Sbjct:   61 QGGGFQAALPGPCFDVLLRHFDVRMELFASPFNSRYSRFCSAFRDTDSVFGSLGSFFDFHPPEGAYEVNPPFVPEVVSRAAAHM 144
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BLAST of mRNA_E-fasciculatus_F_contig14136.3030.1 vs. uniprot
Match: A0A3M6VL48_9STRA (PCIF1_WW domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL48_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.540e-34
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    4 GGGFQASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFADTDGPFGSVGSFFDFQPTEGAYEANPPFVRDVILKMANHMDALL 264
            GGGFQA++  + FDVLLK F  +MECFASP NCRYSR+CSAF DTD  FGSVGSFFDF P  G +EANPPF+  VI +MA+HM ALL
Sbjct:  254 GGGFQAALNEECFDVLLKEFNCKMECFASPLNCRYSRFCSAFLDTDFVFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALL 340
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BLAST of mRNA_E-fasciculatus_F_contig14136.3030.1 vs. uniprot
Match: A0A329T4D0_9STRA (PCIF1_WW domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T4D0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.960e-34
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    4 GGGFQASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFADTDGPFGSVGSFFDFQPTEGAYEANPPFVRDVILKMANHMDALL 264
            GGGFQA++  + FDVLLK F  +MECFASP NCRYSR+CSAF DTD  FGSVGSFFDF P  G +EANPPF+  VI +MA+HM ALL
Sbjct:  274 GGGFQAALNEECFDVLLKEFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALL 360
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BLAST of mRNA_E-fasciculatus_F_contig14136.3030.1 vs. uniprot
Match: M4B1W7_HYAAE (PCIF1_WW domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1W7_HYAAE)

HSP 1 Score: 130 bits (328), Expect = 3.200e-34
Identity = 60/87 (68.97%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    4 GGGFQASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFADTDGPFGSVGSFFDFQPTEGAYEANPPFVRDVILKMANHMDALL 264
            GGGFQA++  + FDVLL  F  +MECFASP NCRYSR+CSAF DTD  FGSVGSFFDF P  G YEANPPF+  VI +MA+HM ALL
Sbjct:  250 GGGFQAALNEECFDVLLNDFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCYEANPPFISKVIKRMADHMTALL 336
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BLAST of mRNA_E-fasciculatus_F_contig14136.3030.1 vs. uniprot
Match: A0A6A3R028_9STRA (PCIF1_WW domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3R028_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.890e-34
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    4 GGGFQASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFADTDGPFGSVGSFFDFQPTEGAYEANPPFVRDVILKMANHMDALL 264
            GGGFQA++  + FDVLLK F  +MECFASP NCRYSR+CSAF DTD  FGSVGSFFDF P  G +EANPPF+  VI +MA+HM ALL
Sbjct:  265 GGGFQAALNEECFDVLLKGFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALL 351
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14136.3030.1 vs. uniprot
Match: A0A3R7HJ33_9STRA (PCIF1_WW domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HJ33_9STRA)

HSP 1 Score: 129 bits (325), Expect = 7.740e-34
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    4 GGGFQASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFADTDGPFGSVGSFFDFQPTEGAYEANPPFVRDVILKMANHMDALL 264
            GGGFQA++  + FDVLLK F A+MECFASP N RYSR+CSAF DTD  FGSVGSFFDF P  G +EANPPF+  VI +MA+HM ALL
Sbjct:  251 GGGFQAALNEECFDVLLKYFDAKMECFASPLNSRYSRFCSAFLDTDAAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALL 337
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14136.3030.1 vs. uniprot
Match: A0A6A4A4B0_9STRA (PCIF1_WW domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4A4B0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.270e-33
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    4 GGGFQASMGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFADTDGPFGSVGSFFDFQPTEGAYEANPPFVRDVILKMANHMDALL 264
            GGGFQA++  + FDVLLK F  +MECFASP NCRYSR+CSAF DTD  FGSVGSFFDF P  G +EANPPF+  VI +MA+HM ALL
Sbjct:  265 GGGFQAALNEECFDVLLKGFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALL 351
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14136.3030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYX1_ECTSI7.400e-5194.32PCIF1_WW domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5LQ06_9PHAE1.010e-3875.26PCIF1_WW domain-containing protein n=2 Tax=Ectocar... [more]
D0NY28_PHYIT2.400e-3568.97PCIF1_WW domain-containing protein n=1 Tax=Phytoph... [more]
A0A7S2V310_9STRA1.180e-3467.86Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A3M6VL48_9STRA1.540e-3468.97PCIF1_WW domain-containing protein n=1 Tax=Peronos... [more]
A0A329T4D0_9STRA1.960e-3468.97PCIF1_WW domain-containing protein n=1 Tax=Phytoph... [more]
M4B1W7_HYAAE3.200e-3468.97PCIF1_WW domain-containing protein n=1 Tax=Hyalope... [more]
A0A6A3R028_9STRA3.890e-3468.97PCIF1_WW domain-containing protein n=4 Tax=Phytoph... [more]
A0A3R7HJ33_9STRA7.740e-3468.97PCIF1_WW domain-containing protein n=3 Tax=Phytoph... [more]
A0A6A4A4B0_9STRA1.270e-3368.97PCIF1_WW domain-containing protein n=3 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14136contigE-fasciculatus_F_contig14136:2216..3016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue2.5e-39
Seed eggNOG ortholog2880.D7FYX1
Preferred namePCIF1
KEGG koko:K17584
GOsGO:0003002,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0007275,GO:0007389,GO:0007444,GO:0007447,GO:0007450,GO:0008150,GO:0009888,GO:0009892,GO:0009953,GO:0010563,GO:0010921,GO:0010923,GO:0015630,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035220,GO:0035222,GO:0035295,GO:0035303,GO:0035305,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044092,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045171,GO:0045936,GO:0048190,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0060429,GO:0065007,GO:0065009,GO:0070013
EggNOG free text desc.negative regulation of phosphatase activity
EggNOG OGs28P6D@1,2QVT7@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14136.3030.1prot_E-fasciculatus_F_contig14136.3030.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14136 2216..2992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.2868998-CDS-E-fasciculatus_F_contig14136:2215..23241622927905.2868998-CDS-E-fasciculatus_F_contig14136:2215..2324Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14136 2216..2324 -
1695995746.1387346-CDS-E-fasciculatus_F_contig14136:2215..23241695995746.1387346-CDS-E-fasciculatus_F_contig14136:2215..2324Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14136 2216..2324 -
1622927905.3074698-CDS-E-fasciculatus_F_contig14136:2861..29921622927905.3074698-CDS-E-fasciculatus_F_contig14136:2861..2992Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14136 2862..2992 -
1695995746.1596482-CDS-E-fasciculatus_F_contig14136:2861..29921695995746.1596482-CDS-E-fasciculatus_F_contig14136:2861..2992Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14136 2862..2992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.330573-UTR-E-fasciculatus_F_contig14136:2992..30161622927905.330573-UTR-E-fasciculatus_F_contig14136:2992..3016Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14136 2993..3016 -
1695995746.1717129-UTR-E-fasciculatus_F_contig14136:2992..30161695995746.1717129-UTR-E-fasciculatus_F_contig14136:2992..3016Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14136 2993..3016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14136.3030.1

>prot_E-fasciculatus_F_contig14136.3030.1 ID=prot_E-fasciculatus_F_contig14136.3030.1|Name=mRNA_E-fasciculatus_F_contig14136.3030.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=80bp
MGGDAFDVLLKRFGARMECFASPFNCRYSRYCSAFADTDGPFGSVGSFFD
FQPTEGAYEANPPFVRDVILKMANHMDALL
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mRNA from alignment at E-fasciculatus_F_contig14136:2216..3016-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14136.3030.1 ID=mRNA_E-fasciculatus_F_contig14136.3030.1|Name=mRNA_E-fasciculatus_F_contig14136.3030.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=801bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14136:2216..3016- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGGCGGGGGCTTTCAGGCCTCCATGGGGGGCGACGCTTTCGACGTCCT
GCTCAAACGCTTCGGCGCGAGGATGGAGTGCTTCGCTTCGCCCTTCAATT
GCCGCTACTCGCGGTACTGCAGCGCCTTCGCCGACACCGACGGGCCTTTC
GGCAGGTGCGGATGAAACGTCTTTTCCCACAGCCAATTTTAAGCAGTGTG
TTTATTTTCTGTTTCTCCGGTATCAGGACATGTGAGGCGGCGATTGTTCT
TTCTTTTCTGTTTCTCCGGTAGCATGACATGTTGGGTGAGGATTTTGCTG
ACTTCTGTCCTTCTGTGTTGACGGATGCGAGGGCGTCGATTCTCTGTCTC
TCGTTTTTTGGTGTCCGGAACGTAAATGGGTTGAAGCGTAGCCACCTATT
CGGCGTGGGGTGGGTCTGAACGGATTTGGATTTATTTGACGTTAGAACAC
TCAAAACAACAATGGCAGCAGGCCTGAAACGATTTGAATGATCCGTCAAG
AACACAGCAGCAGCAGCAGCAGCAGCATCCAACAACGACAATCACTCTTT
GGTTGCTAGCAGCGTGAGATGGGCCTTACCCGCACGGAGCGTACGAACTT
ATCCCTACCCCCCTTGCGACTTTCCCGTCGTTGCATCTTTCGACGCGTTT
GAACCGTCCCTCCTGAATGTCTGTGCGTGTGTTGGCGAGAAGCGTGGGGA
GTTTCTTCGACTTTCAGCCTACGGAGGGAGCCTACGAGGCCAATCCCCCC
TTCGTGCGAGACGTTATCCTAAAGATGGCCAACCACATGGACGCCCTCCT
G
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14136:2216..3016-

>mRNA_E-fasciculatus_F_contig14136.3030.1 ID=mRNA_E-fasciculatus_F_contig14136.3030.1|Name=mRNA_E-fasciculatus_F_contig14136.3030.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14136:2216..3016- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGGCGACGCTTTCGACGTCCTGCTCAAACGCTTCGGCGCGAGGAT
GGAGTGCTTCGCTTCGCCCTTCAATTGCCGCTACTCGCGGTACTGCAGCG
CCTTCGCCGACACCGACGGGCCTTTCGGCAGATGGGGGGCGACGCTTTCG
ACGTCCTGCTCAAACGCTTCGGCGCGAGGATGGAGTGCTTCGCTTCGCCC
TTCAATTGCCGCTACTCGCGGTACTGCAGCGCCTTCGCCGACACCGACGG
GCCTTTCGGCAGCGTGGGGAGTTTCTTCGACTTTCAGCCTACGGAGGGAG
CCTACGAGGCCAATCCCCCCTTCGTGCGAGACGTTATCCTAAAGATGGCC
AACCACATGGACGCCCTCCTGCGTGGGGAGTTTCTTCGACTTTCAGCCTA
CGGAGGGAGCCTACGAGGCCAATCCCCCCTTCGTGCGAGACGTTATCCTA
AAGATGGCCAACCACATGGACGCCCTCCTG
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