mRNA_E-fasciculatus_F_contig14129.3023.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14129.3023.1
Unique NamemRNA_E-fasciculatus_F_contig14129.3023.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14129.3023.1 vs. uniprot
Match: D7FVH7_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH7_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 3.410e-34
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 PLIQDNKRWACLLYAINLGRIRTIQTLLSVAPTTVNQIASDGSTPLYMASGFGQYEAVSLLLSAGA 198
            PLIQDNKRWACL YAINLGRIRTIQT+LSVAPTTVNQ+A DGSTPLYMASGFGQYEAVSLLLSAGA
Sbjct:   96 PLIQDNKRWACLWYAINLGRIRTIQTILSVAPTTVNQVAPDGSTPLYMASGFGQYEAVSLLLSAGA 161
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14129.3023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVH7_ECTSI3.410e-3493.94Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14129contigE-fasciculatus_F_contig14129:2748..2945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue6.8e-27
Seed eggNOG ortholog2880.D7FVH7
KEGG koko:K10324,ko:K21435
GOsGO:0001654,GO:0001736,GO:0001737,GO:0001738,GO:0001745,GO:0002009,GO:0002165,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0007163,GO:0007164,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0008544,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009913,GO:0009987,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0030855,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0042067,GO:0044424,GO:0044464,GO:0048513,GO:0048563,GO:0048569,GO:0048592,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0060429,GO:0060562,GO:0071840,GO:0090596,GO:0120036
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionsimilar to ankyrin 2,3/unc44
Ec32 orthologEc-09_001120.2
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927904.3297648-CDS-E-fasciculatus_F_contig14129:2747..29451622927904.3297648-CDS-E-fasciculatus_F_contig14129:2747..2945Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14129 2748..2945 +
1695995745.760544-CDS-E-fasciculatus_F_contig14129:2747..29451695995745.760544-CDS-E-fasciculatus_F_contig14129:2747..2945Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14129 2748..2945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14129.3023.1prot_E-fasciculatus_F_contig14129.3023.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14129 2748..2945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14129.3023.1

>prot_E-fasciculatus_F_contig14129.3023.1 ID=prot_E-fasciculatus_F_contig14129.3023.1|Name=mRNA_E-fasciculatus_F_contig14129.3023.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
PLIQDNKRWACLLYAINLGRIRTIQTLLSVAPTTVNQIASDGSTPLYMAS
GFGQYEAVSLLLSAGA
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mRNA from alignment at E-fasciculatus_F_contig14129:2748..2945+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14129.3023.1 ID=mRNA_E-fasciculatus_F_contig14129.3023.1|Name=mRNA_E-fasciculatus_F_contig14129.3023.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=198bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14129:2748..2945+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCTCATCCAGGACAACAAACGCTGGGCCTGCTTGTTGTACGCGATTAA
TCTGGGACGGATCCGCACTATTCAAACACTCTTGTCTGTGGCGCCGACGA
CAGTCAACCAAATTGCCTCGGACGGTTCGACGCCCCTCTATATGGCGTCA
GGGTTTGGCCAGTACGAGGCAGTGTCCCTGCTTCTGTCGGCTGGTGCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14129:2748..2945+

>mRNA_E-fasciculatus_F_contig14129.3023.1 ID=mRNA_E-fasciculatus_F_contig14129.3023.1|Name=mRNA_E-fasciculatus_F_contig14129.3023.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14129:2748..2945+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCTCATCCAGGACAACAAACGCTGGGCCTGCTTGTTGTACGCGATTAA
TCTGGGACGGATCCGCACTATTCAAACACTCTTGTCTGTGGCGCCGACGA
CAGTCAACCAAATTGCCTCGGACGGTTCGACGCCCCTCTATATGGCGTCA
GGGTTTGGCCAGTACGAGGCAGTGTCCCTGCTTCTGTCGGCTGGTGCTCC
TCTCATCCAGGACAACAAACGCTGGGCCTGCTTGTTGTACGCGATTAATC
TGGGACGGATCCGCACTATTCAAACACTCTTGTCTGTGGCGCCGACGACA
GTCAACCAAATTGCCTCGGACGGTTCGACGCCCCTCTATATGGCGTCAGG
GTTTGGCCAGTACGAGGCAGTGTCCCTGCTTCTGTCGGCTGGTGCT
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