mRNA_E-fasciculatus_F_contig14128.3022.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14128.3022.1
Unique NamemRNA_E-fasciculatus_F_contig14128.3022.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14128.3022.1 vs. uniprot
Match: A0A6H5JZW2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZW2_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 6.780e-37
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 QVKLTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMVMEYFDHDLKSVMRHMRHQK 207
            QVKLTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMVMEYFDHDLKSVMRHMRHQK
Sbjct:  608 QVKLTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMVMEYFDHDLKSVMRHMRHQK 676
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BLAST of mRNA_E-fasciculatus_F_contig14128.3022.1 vs. uniprot
Match: A0A835ZAM4_9STRA (Mammalian PITSLRE alpha protein kinase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAM4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.920e-23
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:   10 LTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMVMEYFDHDLKSVMRHMR 198
            + + + KEGFPITALRETNVLLSLH+PNIVRV EMV GS+LDK+YMVMEYFD DLKS + H++
Sbjct:    1 MNKESQKEGFPITALRETNVLLSLHHPNIVRVYEMVTGSSLDKIYMVMEYFDADLKSTISHLK 63
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BLAST of mRNA_E-fasciculatus_F_contig14128.3022.1 vs. uniprot
Match: A0A812TH36_SYMMI (CDKG-2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TH36_SYMMI)

HSP 1 Score: 93.6 bits (231), Expect = 1.640e-21
Identity = 45/62 (72.58%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 QVKLTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMVMEYFDHDLKSVM 186
            QVK+TRN+ K GFPITALRETN+LL+L +PNIV V EMVVGS++DKVYMVMEY ++DLK+ M
Sbjct:  135 QVKMTRNDQKVGFPITALRETNILLALRHPNIVSVKEMVVGSSIDKVYMVMEYLENDLKTCM 196
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BLAST of mRNA_E-fasciculatus_F_contig14128.3022.1 vs. uniprot
Match: A0A485LQL1_9STRA (Aste57867_24097 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQL1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.940e-19
Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 QVKLTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMVMEYFDHDLKSV 183
            Q+K+  +  KEGFP+TALRETN+LL+LH+PNI+R+ EMVVGST DK+YMVM+Y D+DLK V
Sbjct:  103 QIKMAADICKEGFPVTALRETNILLALHHPNIIRMREMVVGSTPDKIYMVMDYSDNDLKRV 163
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BLAST of mRNA_E-fasciculatus_F_contig14128.3022.1 vs. uniprot
Match: A0A397DMQ1_9STRA (Protein kinase domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DMQ1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.230e-19
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 QVKLTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMVMEYFDHDLKSV 183
            Q+K+  +  KEGFP+TALRETN+LL+L +PNI+R+ EMVVGST DKVYMVM+Y D+DLK V
Sbjct:   98 QIKMAADICKEGFPVTALRETNILLALQHPNIIRMREMVVGSTPDKVYMVMDYSDNDLKRV 158
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BLAST of mRNA_E-fasciculatus_F_contig14128.3022.1 vs. uniprot
Match: A0A7S2DIE6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DIE6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.470e-19
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    7 KLTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMVMEYFDHDLKSVM 186
            K+  NN  EGFPITALRETNVLL+L +PNIV VLEMVVG  LDKV+MVMEYF++DLK V+
Sbjct:   72 KVKMNNRMEGFPITALRETNVLLALQHPNIVGVLEMVVGRELDKVFMVMEYFENDLKQVL 131
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BLAST of mRNA_E-fasciculatus_F_contig14128.3022.1 vs. uniprot
Match: A0A3M6VAN0_9STRA (Protein kinase domain-containing protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VAN0_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.390e-19
Identity = 43/63 (68.25%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 QVKLTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMVMEYFDHDLKSVMR 189
            QVK++ +  +EGFPITALRETNVLL+L +PNIV+V EMVVGST DK+YMVM+Y ++DLK VM+
Sbjct:  110 QVKMSADASQEGFPITALRETNVLLALDHPNIVQVREMVVGSTPDKIYMVMDYAENDLKHVMQ 172
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BLAST of mRNA_E-fasciculatus_F_contig14128.3022.1 vs. uniprot
Match: A0A662X1Y8_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X1Y8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.110e-19
Identity = 42/62 (67.74%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 QVKLTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMVMEYFDHDLKSVM 186
            QVK++ +  +EGFP+TALRETNVLLSL +PNI++V EMVVGST DK+YMVM+Y ++DLK VM
Sbjct:  132 QVKMSADVSQEGFPVTALRETNVLLSLDHPNIIQVREMVVGSTPDKIYMVMDYAENDLKQVM 193
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BLAST of mRNA_E-fasciculatus_F_contig14128.3022.1 vs. uniprot
Match: A0A6G0X8M8_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8M8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 7.080e-19
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 QVKLTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMVMEYFDHDLKSV 183
            QVK+  +  KEGFP+TALRETN+LLSL +PNI+R+ EMVVGST DK+YMVM+Y D+DLK V
Sbjct:  101 QVKMATDICKEGFPVTALRETNILLSLEHPNIIRMREMVVGSTPDKIYMVMDYSDNDLKRV 161
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BLAST of mRNA_E-fasciculatus_F_contig14128.3022.1 vs. uniprot
Match: A0A484E145_BRELC (Protein kinase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E145_BRELC)

HSP 1 Score: 87.4 bits (215), Expect = 9.920e-19
Identity = 42/63 (66.67%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 QVKLTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMVMEYFDHDLKSVMR 189
            QVK++ +  +EGFPITALRETNVLL+L +PNI++V EMVVGST DK++MVMEY ++DLK VM+
Sbjct:  104 QVKMSASASQEGFPITALRETNVLLALDHPNIIQVREMVVGSTPDKIFMVMEYAENDLKHVMQ 166
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14128.3022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZW2_9PHAE6.780e-37100.00Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835ZAM4_9STRA3.920e-2373.02Mammalian PITSLRE alpha protein kinase-like protei... [more]
A0A812TH36_SYMMI1.640e-2172.58CDKG-2 protein (Fragment) n=1 Tax=Symbiodinium mic... [more]
A0A485LQL1_9STRA1.940e-1967.21Aste57867_24097 protein n=1 Tax=Aphanomyces stella... [more]
A0A397DMQ1_9STRA3.230e-1967.21Protein kinase domain-containing protein n=2 Tax=A... [more]
A0A7S2DIE6_9STRA3.470e-1973.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3M6VAN0_9STRA5.390e-1968.25Protein kinase domain-containing protein n=2 Tax=P... [more]
A0A662X1Y8_9STRA6.110e-1967.74Protein kinase domain-containing protein n=2 Tax=N... [more]
A0A6G0X8M8_9STRA7.080e-1968.85Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A484E145_BRELC9.920e-1966.67Protein kinase domain-containing protein n=1 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14128contigE-fasciculatus_F_contig14128:3134..3340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog2880.D8LCL8
KEGG koko:K02449,ko:K08818
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000082,GO:0000086,GO:0000166,GO:0000226,GO:0000278,GO:0000302,GO:0000307,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006325,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007093,GO:0007098,GO:0007099,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009966,GO:0009987,GO:0010033,GO:0010035,GO:0010389,GO:0010468,GO:0010564,GO:0010646,GO:0010948,GO:0012505,GO:0015030,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016604,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019904,GO:0022402,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030330,GO:0030332,GO:0030554,GO:0031023,GO:0031410,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0034645,GO:0035556,GO:0035639,GO:0035690,GO:0036094,GO:0036211,GO:0042127,GO:0042221,GO:0042493,GO:0042770,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0044839,GO:0044843,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051298,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070925,GO:0071156,GO:0071158,GO:0071241,GO:0071704,GO:0071731,GO:0071732,GO:0071840,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0090068,GO:0090304,GO:0097124,GO:0097159,GO:0097366,GO:0097367,GO:0097472,GO:0097708,GO:0098534,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901796,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902170,GO:1902400,GO:1902402,GO:1902403,GO:1902494,GO:1902531,GO:1902554,GO:1902749,GO:1902806,GO:1902807,GO:1902911,GO:1903047,GO:1990234,GO:2000045,GO:2000134
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activity
EggNOG OGsKOG0663@1,KOG0663@2759
EC2.7.11.22
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927904.2612855-CDS-E-fasciculatus_F_contig14128:3133..33401622927904.2612855-CDS-E-fasciculatus_F_contig14128:3133..3340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14128 3134..3340 +
1695995745.7381246-CDS-E-fasciculatus_F_contig14128:3133..33401695995745.7381246-CDS-E-fasciculatus_F_contig14128:3133..3340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14128 3134..3340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14128.3022.1prot_E-fasciculatus_F_contig14128.3022.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14128 3134..3340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14128.3022.1

>prot_E-fasciculatus_F_contig14128.3022.1 ID=prot_E-fasciculatus_F_contig14128.3022.1|Name=mRNA_E-fasciculatus_F_contig14128.3022.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
QVKLTRNNGKEGFPITALRETNVLLSLHNPNIVRVLEMVVGSTLDKVYMV
MEYFDHDLKSVMRHMRHQK
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mRNA from alignment at E-fasciculatus_F_contig14128:3134..3340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14128.3022.1 ID=mRNA_E-fasciculatus_F_contig14128.3022.1|Name=mRNA_E-fasciculatus_F_contig14128.3022.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=207bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14128:3134..3340+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGAAGCTGACGAGGAACAACGGCAAGGAGGGCTTTCCGATCACCGC
CCTGAGGGAGACGAACGTGCTGCTCAGCCTGCACAACCCCAACATCGTGC
GGGTGCTAGAGATGGTGGTCGGGTCCACCCTGGACAAGGTGTACATGGTG
ATGGAGTACTTCGACCACGACCTCAAGTCGGTGATGCGACATATGCGGCA
TCAGAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14128:3134..3340+

>mRNA_E-fasciculatus_F_contig14128.3022.1 ID=mRNA_E-fasciculatus_F_contig14128.3022.1|Name=mRNA_E-fasciculatus_F_contig14128.3022.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14128:3134..3340+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGAAGCTGACGAGGAACAACGGCAAGGAGGGCTTTCCGATCACCGC
CCTGAGGGAGACGAACGTGCTGCTCAGCCTGCACAACCCCAACATCGTGC
GGGTGCTAGAGATGGTGGTCGGGTCCACCCTGGACAAGGTGTACATGGTG
ATGGAGTACTTCGACCACGACCTCAAGTCGGTGATGCGACATATGCGGCA
TCAGAAGCAGGTGAAGCTGACGAGGAACAACGGCAAGGAGGGCTTTCCGA
TCACCGCCCTGAGGGAGACGAACGTGCTGCTCAGCCTGCACAACCCCAAC
ATCGTGCGGGTGCTAGAGATGGTGGTCGGGTCCACCCTGGACAAGGTGTA
CATGGTGATGGAGTACTTCGACCACGACCTCAAGTCGGTGATGCGACATA
TGCGGCATCAGAAG
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