mRNA_E-fasciculatus_F_contig14121.3018.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14121.3018.1
Unique NamemRNA_E-fasciculatus_F_contig14121.3018.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14121.3018.1 vs. uniprot
Match: D7G450_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G450_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.980e-44
Identity = 83/103 (80.58%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:  130 ETQRGLSTLGSDLRAGLGAFGTAVIAEATGIRADVREVKRDLAGVRESVQNCRAENMEFFASFTAGLEAAQQGIEIIRNAPLEEAQMSLKDFEASKGNTRFLE 438
            + Q GL+TLGSDLR+GLG  G AV++EATGIR DVREVKRDLA VRESV++CRAENMEFFASFTAGLEAAQQGIEI+R+APLEEA+MSLK+FE SKGN RFLE
Sbjct:    2 QAQHGLATLGSDLRSGLGTIGMAVMSEATGIRTDVREVKRDLASVRESVEDCRAENMEFFASFTAGLEAAQQGIEIMRSAPLEEARMSLKNFEGSKGNVRFLE 104
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BLAST of mRNA_E-fasciculatus_F_contig14121.3018.1 vs. uniprot
Match: A0A6H5KIE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE6_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.500e-42
Identity = 77/92 (83.70%), Postives = 86/92 (93.48%), Query Frame = 1 
Query:  163 DLRAGLGAFGTAVIAEATGIRADVREVKRDLAGVRESVQNCRAENMEFFASFTAGLEAAQQGIEIIRNAPLEEAQMSLKDFEASKGNTRFLE 438
            D R+GLGA GTAV+AEATGI ADVREVKRDLA VRESV++CRAENM FFASFTAGLEAA+QGIE++RNAPLEEAQM+LK+FEASKGN RFLE
Sbjct:    5 DHRSGLGAIGTAVMAEATGIHADVREVKRDLASVRESVEDCRAENMVFFASFTAGLEAARQGIELMRNAPLEEAQMALKNFEASKGNVRFLE 96
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BLAST of mRNA_E-fasciculatus_F_contig14121.3018.1 vs. uniprot
Match: A0A6H5KPC4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC4_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.910e-33
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:  130 ETQRGLSTLGSDLRAGLGAFGTAVIAEATGIRADVREVKRDLAGVRESVQNCRAENMEFFASFTAGLEAAQQGIE 354
            ETQRGL+TLG DLR+GLGA GTAV+AEATGI ADVREVKRDLA VRESV++CRAENM FFASFTAGLEAA+QGIE
Sbjct:   17 ETQRGLATLGRDLRSGLGAIGTAVMAEATGIHADVREVKRDLASVRESVEDCRAENMVFFASFTAGLEAARQGIE 91
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BLAST of mRNA_E-fasciculatus_F_contig14121.3018.1 vs. uniprot
Match: A0A6H5KAT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT8_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.080e-31
Identity = 67/80 (83.75%), Postives = 75/80 (93.75%), Query Frame = 1 
Query:  202 IAEATGIRADVREVKRDLAGVRESVQNCRAENMEFFASFTAGLEAAQQGIEIIR-NAPLEEAQMSLKDFEASKGNTRFLE 438
            +AEATGI ADVREVKRDLA VRESV++CRAENM FFASFTAGLEAA+QGIE++R NAPLEEAQM+LK+FEASKGN RFLE
Sbjct:    1 MAEATGIHADVREVKRDLASVRESVEDCRAENMVFFASFTAGLEAARQGIELMRVNAPLEEAQMALKNFEASKGNVRFLE 80
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BLAST of mRNA_E-fasciculatus_F_contig14121.3018.1 vs. uniprot
Match: A0A6H5K3B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B9_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.010e-24
Identity = 67/141 (47.52%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:    1 VEDESDALVEWSGDVVLKARDKSRQTQQERSG---AASRALEQHCEETQRGLSTLGSDLRAGLGAFGTAVIAEATGIRADVREVKRDLAGVRESVQNCRAENMEFFASFTAGLEAAQQGIEIIRNAPLEEAQMSLKDFEAS 414
            VEDES+ L+EWSGDVVLKARDKS  T+Q+  G   AA RA EQH                                      EV+RDL  VR SV+ CRAENM FF +F + +EA Q G++++RN PLEEA MSLK+FEAS
Sbjct:   32 VEDESNGLIEWSGDVVLKARDKSLLTKQQGRGDGSAAMRASEQHG------------------------------------HEVRRDLESVRASVEQCRAENMLFFTTFMSSIEATQHGVDVLRNGPLEEAHMSLKEFEAS 136
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BLAST of mRNA_E-fasciculatus_F_contig14121.3018.1 vs. uniprot
Match: A0A6H5KJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.420e-21
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:  130 ETQRGLSTLGSDLRAGLGAFGTAVIAEATGIRADVREVKRDLAGVRESVQNCRAENME 303
            +TQ GL+TLG DLR+GLGA GTAV+AEATGIRADVREVKRDLA VRESV+ CRAENME
Sbjct:    2 QTQHGLATLGGDLRSGLGAIGTAVMAEATGIRADVREVKRDLASVRESVEVCRAENME 59
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BLAST of mRNA_E-fasciculatus_F_contig14121.3018.1 vs. uniprot
Match: A0A6H5JUZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.110e-12
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 VEDESDALVEWSGDVVLKARDKSRQTQQERSGAASRALEQHCEET 135
            VEDESDALVEWSGDVVLKARD SR+TQQ+ S AA+RA+EQH EET
Sbjct:   32 VEDESDALVEWSGDVVLKARDTSRRTQQKGSDAAARAVEQHREET 76
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14121.3018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G450_ECTSI1.980e-4480.58Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KIE6_9PHAE1.500e-4283.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPC4_9PHAE1.910e-3385.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KAT8_9PHAE2.080e-3183.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3B9_9PHAE2.010e-2447.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJG9_9PHAE3.420e-2182.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUZ0_9PHAE2.110e-1282.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14121contigE-fasciculatus_F_contig14121:177..3420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue6.5e-38
Seed eggNOG ortholog2880.D7G450
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size441
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14121.3018.1prot_E-fasciculatus_F_contig14121.3018.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14121 177..3418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927903.8130605-CDS-E-fasciculatus_F_contig14121:176..3081622927903.8130605-CDS-E-fasciculatus_F_contig14121:176..308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14121 177..308 +
1695995745.592711-CDS-E-fasciculatus_F_contig14121:176..3081695995745.592711-CDS-E-fasciculatus_F_contig14121:176..308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14121 177..308 +
1622927903.8292928-CDS-E-fasciculatus_F_contig14121:2377..26081622927903.8292928-CDS-E-fasciculatus_F_contig14121:2377..2608Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14121 2378..2608 +
1695995745.6078477-CDS-E-fasciculatus_F_contig14121:2377..26081695995745.6078477-CDS-E-fasciculatus_F_contig14121:2377..2608Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14121 2378..2608 +
1622927903.8502514-CDS-E-fasciculatus_F_contig14121:3343..34181622927903.8502514-CDS-E-fasciculatus_F_contig14121:3343..3418Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14121 3344..3418 +
1695995745.6174407-CDS-E-fasciculatus_F_contig14121:3343..34181695995745.6174407-CDS-E-fasciculatus_F_contig14121:3343..3418Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14121 3344..3418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14121.3018.1

>prot_E-fasciculatus_F_contig14121.3018.1 ID=prot_E-fasciculatus_F_contig14121.3018.1|Name=mRNA_E-fasciculatus_F_contig14121.3018.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=146bp
VEDESDALVEWSGDVVLKARDKSRQTQQERSGAASRALEQHCEETQRGLS
TLGSDLRAGLGAFGTAVIAEATGIRADVREVKRDLAGVRESVQNCRAENM
EFFASFTAGLEAAQQGIEIIRNAPLEEAQMSLKDFEASKGNTRFLE
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mRNA from alignment at E-fasciculatus_F_contig14121:177..3420+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14121.3018.1 ID=mRNA_E-fasciculatus_F_contig14121.3018.1|Name=mRNA_E-fasciculatus_F_contig14121.3018.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3244bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14121:177..3420+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGAGGACGAGAGCGACGCGCTTGTGGAGTGGTCTGGCGATGTCGTCCT
GAAGGCTCGGGACAAATCTCGCCAGACCCAGCAGGAAAGGTCGGGTGCTG
CATCAAGAGCTCTGGAGCAGCACTGCGAAGAGGTGCGTGCTCCTGCTCGT
CAGAATGCACCCACCATCCGTGGGTCTTGTTTCGGCGCGCGAAAAAATTG
CGAGGCATCTATGCAAATTGCATACATGTTAGCATACCACACCGAAACTC
TGGATGGAATGGTGTCCGTTAAATGGCATGAGGGGTCTCCCTACTCCTGG
TGTAAGGTTCAGCGCTTTCCCGACAGAAGAGTACCAGGTACATACAAGCT
CACAGCAGTGGTACATTTGTGTTGATGAAGTTGGAAGCGCGGCCCAATTA
TTTCTCTCCAGTCCGTGTCACATTTTGCATTTTGCCGCCTCTCTCCAAAC
ACCAGTGCAATTGTTTCTGAGGTACAGCTCTACCAAGCAGAAGAATAGAG
GGAGATAAATGCGTGTGCAGCGGGCTGCAAGCCCTCACGCGTGCCCTAAT
TTTGTTCCTGGTATACAATAACATCGAAACACTGCTGTCAAAGTACTCCT
GCGTGCTGAGTTCTTGTTGAGTTCCAGGTCACCCGTGGCGTGTGCTCTTT
TTCTGCGGCGTAAGCTACAATACATATCAAATTCTAATGAGGCATGTTCT
GGCGATTTCCTTCCGAAGGAGCGATTGCCACATTTAATGCGCACGTGCGC
ACGTTGAGCGCTGGGCAGGTCCCTTTGATCCGTTTTTGGGTAGGGCGGGT
GTGACTTACATAGTAGCACCGCCCACCGGACATCCCCAGGAAGAATGAAA
GGCCATTTTGCGTACAGCCCGAGCTGGGTATGCTGCTGTAGGTTGTGGTA
TGCACGCCTTGCATCGCTCCACGATGCATCTACTTCAGAAGCGATGCTTG
TTGCAGGAACAGCTAGCAGGCGCGGTGGTCCCAGACTCCCACATTTTTGG
TGGAGAACCGTATGGTTCCGAGTCGCCGCCCCTATGCGTAGACTATGTTC
TGTGCGGTTATTTTTTTACACAAATAGTAAAGTTCGTGTGCACTGAAGTA
GAGCGTGCTGGTGCTCTTTCTCGCGTCATGAATCGAAGGCGACAACCGCA
GGAGGGGTGGGAAAGGGGAGCCAGGAAGAGAAACCGGTGTGATCACGGAT
TGGAGCTCCTACCCGGCAGAAGGGCTGCGAACGAGATGAAAACAAAACAA
AAAACGAAACGGATACGATACATAGGGCCGGACCTTAAAGAGGCAGAGAG
AAGAAACATTATCGTTCTCTAAATCATGACAGCCCGACAACAGGGCAGAA
AGAATGGACCACGGGGGGTTAGTACCCACGCGGCAGCGAATGTTTTTTCA
TGGTTCCTTCTCAGGGGCACACGCAGGAGGCTCGTCGGTACATCACGGCA
CGCGCCCAGGGACCGCTAGGCATCCTTGGTACGCGCAATTGGCGTCGAAA
AATTGTCTCTGTTCGCGGGGGGCAGTCCGCATGAAAAATGCCGTCGCGAA
AGGCGTCGATTGAAGTAGGCGAAACTGCTGTGTTGAAGATTCTGGCCCAG
GCCAGGATGATGACCTAGTTTGGTGGCTTTCGAGAGTATGTTGGTCAAGG
CCATTGGCACGAGCGACACGGCTTCAGCCATGTGCGAGGACGAATTTTCT
TCTACCCGGCAAACGCGAGAACTGTTTTTCTTCTCACACAGGCGACCGCA
GCGTGTAGCATGCACCATGTGGTTTTCCCGGCAATGCCCGGGCAAAGGTT
ACCTCATGGCGAGCTGGTTGCTGTTTTTCCTCGCGTATTTATCTTTCTCT
ATCGTAGGACAACATGAACACATGGGTTATTGTGAGCTTCATAAACTCTA
CGCTAGCTTTGCGGCCGATTTCTTAAAAACCGCTAATGAACGGGAAAGAC
TTGAGTGCTTACTGGATGTGCTCTCGATATGGTACACTCTTTCGCTTTGC
ATGCAGATATACCATGATGTTGAGAATCTAAACGGGTTTTGCACCCGAAG
GGACACGACTGTTTGGATGCGGTTCCTCCCTCATGGAGCGACCCGAATGA
AAGCGCGAGAAGGAAGTTGTTGTTTGCCACCTTAGCACTTCAGCCATATC
CCGCCCCTTCTACCTCCCGCTGCAACCTTGACGTGTTTCTTCCCGCGATA
GACGCAACGCGGTCTGTCAACCTTGGGCAGCGACCTCCGTGCTGGTCTGG
GAGCTTTTGGAACGGCGGTCATCGCGGAGGCCACGGGAATTCGTGCCGAC
GTCCGCGAGGTCAAGCGTGACTTGGCGGGCGTGCGTGAGAGCGTACAAAA
CTGCCGGGCGGAAAACATGGAATTCTTCGCAAGTTTCACGGCTGGATTGG
AAGCTGCTCAACAGGGCATCGAAATAATCAGGGTAGGTACTCGTTTTACA
ACACATCATTGGGGGGGGTGGTGATTCACTCAGGTGGTCCTGGCCTCATT
TCATGTGGTTGGTTGTGACCTGATGGCAAAATATAGTAGCAAAGTGACAC
ACACGCAGTCGGTTGGTGGAATTTGCTGAGTCCTTCTCTTCTCCGTTACA
TTGATAGGTGGCTAAACGGATGGCGCCGACGATGTAGACACAACGAATAA
CGTTGTTTCCATACCCCGATCCGCGAGTTCTTTTCCTTACTTTCCCCGTC
CGGCGGCCAAAATGAGCCCCCCGTGTATTGTTTTCCATAGGTTGCTTTGC
TGCGCCTAGAAGAGGTACCATCGCAATGACCGCAATTGTCCACGCCAAAA
CGCCCTGCGAAAACAAGCCGCACCTGGTACGTTTTCTAGTACTGTGGCTT
CGTGGTTCTGCCATGCGACGCGAACATGGTAGCTATTTGGCGTGGTTCCA
AAAACACCCAGTCCATCGGAAATTGTTGGCGTTGGATCTTGTTGCGAAGG
TATAGAAGGTATAGTTTAGAAGAAATTGAGTATGTTGTGCCTGCGTTGTT
GATCATTTTATTGGCGAAACCAAACATTCTGATATTTTGTGACTTTCCTG
GGGCGGGACACGCAGGCCACACGACTGTGCGGCTGAATGTTTATACGGCG
GTATCACGCAGCCCGCACGCTCTGTCACTGGATGACTTCTCTGTTGCGCT
GCGTCCGTCATCTTCAGAACGCTCCCCTGGAAGAGGCGCAAATGTCCCTG
AAGGACTTCGAGGCCAGCAAGGGTAATACGCGATTTCTGGAGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14121:177..3420+

>mRNA_E-fasciculatus_F_contig14121.3018.1 ID=mRNA_E-fasciculatus_F_contig14121.3018.1|Name=mRNA_E-fasciculatus_F_contig14121.3018.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14121:177..3420+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGAGGACGAGAGCGACGCGCTTGTGGAGTGGTCTGGCGATGTCGTCCT
GAAGGCTCGGGACAAATCTCGCCAGACCCAGCAGGAAAGGTCGGGTGCTG
CATCAAGAGCTCTGGAGCAGCACTGCGAAGAGGTGGAGGACGAGAGCGAC
GCGCTTGTGGAGTGGTCTGGCGATGTCGTCCTGAAGGCTCGGGACAAATC
TCGCCAGACCCAGCAGGAAAGGTCGGGTGCTGCATCAAGAGCTCTGGAGC
AGCACTGCGAAGAGACGCAACGCGGTCTGTCAACCTTGGGCAGCGACCTC
CGTGCTGGTCTGGGAGCTTTTGGAACGGCGGTCATCGCGGAGGCCACGGG
AATTCGTGCCGACGTCCGCGAGGTCAAGCGTGACTTGGCGGGCGTGCGTG
AGAGCGTACAAAACTGCCGGGCGGAAAACATGGAATTCTTCGCAAGTTTC
ACGGCTGGATTGGAAGCTGCTCAACAGGGCATCGAAATAATCAGGACGCA
ACGCGGTCTGTCAACCTTGGGCAGCGACCTCCGTGCTGGTCTGGGAGCTT
TTGGAACGGCGGTCATCGCGGAGGCCACGGGAATTCGTGCCGACGTCCGC
GAGGTCAAGCGTGACTTGGCGGGCGTGCGTGAGAGCGTACAAAACTGCCG
GGCGGAAAACATGGAATTCTTCGCAAGTTTCACGGCTGGATTGGAAGCTG
CTCAACAGGGCATCGAAATAATCAGGAACGCTCCCCTGGAAGAGGCGCAA
ATGTCCCTGAAGGACTTCGAGGCCAGCAAGGGTAATACGCGATTTCTGGA
GAACGCTCCCCTGGAAGAGGCGCAAATGTCCCTGAAGGACTTCGAGGCCA
GCAAGGGTAATACGCGATTTCTGGAG
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