mRNA_E-fasciculatus_F_contig14105.3006.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14105.3006.1
Unique NamemRNA_E-fasciculatus_F_contig14105.3006.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14105.3006.1 vs. uniprot
Match: D8LM09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM09_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 6.270e-125
Identity = 198/210 (94.29%), Postives = 202/210 (96.19%), Query Frame = 1 
Query:    1 MRSYAVAAFFLASVVESFHVSTVGRPHEFRSRSSSRAGGASLSPLRMGAPSLPSAESLRKTAASTAAALLIAFSPAVASYQHAFAADRAGAQELSPAEMLVKKTTDMQRKRLKDESQKQLQGDVTMQEGDLIARVLVSIKQELYDLGAPDTSGFPAVDTDEARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTADDLAFPLTKDAWRL 630
            MRSYAVAAFFLASVVESFHVSTVGRPHEF S  SS   GAS+SPL MGAPSLPSAESLRKTAASTAAALLIAFSPAVASYQHAFAADRAGAQELSPAEMLVKKTTDMQRKRLKDESQKQLQGDVTMQEGDLIARVLVSIKQ+LYDLGAPDT+GFPAVDTD+ARLIVAAFGKDGPPVAAKRL VKGRQFPVTVELTADDLAFPLTKDAWRL
Sbjct:    1 MRSYAVAAFFLASVVESFHVSTVGRPHEFHSSRSSSRAGASVSPLLMGAPSLPSAESLRKTAASTAAALLIAFSPAVASYQHAFAADRAGAQELSPAEMLVKKTTDMQRKRLKDESQKQLQGDVTMQEGDLIARVLVSIKQDLYDLGAPDTTGFPAVDTDDARLIVAAFGKDGPPVAAKRLAVKGRQFPVTVELTADDLAFPLTKDAWRL 210
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BLAST of mRNA_E-fasciculatus_F_contig14105.3006.1 vs. uniprot
Match: A0A836CAJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.670e-30
Identity = 59/117 (50.43%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:  274 QELSPAEMLVKKTTDMQRKRLKDESQKQLQGDVTMQEGDLIARVLVSIKQELYDLGAPDTSGFPAVDTDEARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTADDLAFPLTKDAW 624
            ++++P + L ++ T  Q  R++ E Q+ L+ D   + G+LIARV+VSIK + + LG PD   FP +DT++ARLIV AFG+ GPPVA++R+ +KG +FP  +ELTADDLAFPLTK+ W
Sbjct:   96 EDINPVQQLAQQATAEQVTRVRAEQQEVLRRDALREPGELIARVVVSIKSDAFPLGFPDVGPFPELDTEDARLIVTAFGRSGPPVASRRVPLKGLKFPALLELTADDLAFPLTKEVW 212
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BLAST of mRNA_E-fasciculatus_F_contig14105.3006.1 vs. uniprot
Match: A0A4D9DAT9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAT9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.640e-9
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:  388 DLIARVLVSIKQ-ELYDLGAPDTSGFP--AVDTDEARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTADDLAFPLTKDAWR 627
            D+IA+  V + + E Y LG P+  G    A++ D A L++  +G++G PVAAK++ ++G QFP   ELT ++L FPLTK+ W 
Sbjct:  147 DVIAKGTVRLPEIEGYPLG-PERPGVINYALENDNAALLITCYGREGGPVAAKKIQLRGLQFPYNFELTFNNLLFPLTKETWE 228
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14105.3006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LM09_ECTSI6.270e-12594.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAJ8_9STRA1.670e-3050.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DAT9_9STRA2.640e-942.17Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14105contigE-fasciculatus_F_contig14105:1..2812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_002410.1
Exons5
Model size630
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14105.3006.1prot_E-fasciculatus_F_contig14105.3006.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14105 1..2812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927902.3575768-CDS-E-fasciculatus_F_contig14105:0..151622927902.3575768-CDS-E-fasciculatus_F_contig14105:0..15Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14105 1..15 -
1695995744.8527055-CDS-E-fasciculatus_F_contig14105:0..151695995744.8527055-CDS-E-fasciculatus_F_contig14105:0..15Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14105 1..15 -
1622927902.370439-CDS-E-fasciculatus_F_contig14105:438..6511622927902.370439-CDS-E-fasciculatus_F_contig14105:438..651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14105 439..651 -
1695995744.8618293-CDS-E-fasciculatus_F_contig14105:438..6511695995744.8618293-CDS-E-fasciculatus_F_contig14105:438..651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14105 439..651 -
1622927902.3813279-CDS-E-fasciculatus_F_contig14105:956..10341622927902.3813279-CDS-E-fasciculatus_F_contig14105:956..1034Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14105 957..1034 -
1695995744.8696227-CDS-E-fasciculatus_F_contig14105:956..10341695995744.8696227-CDS-E-fasciculatus_F_contig14105:956..1034Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14105 957..1034 -
1622927902.3924825-CDS-E-fasciculatus_F_contig14105:2108..23401622927902.3924825-CDS-E-fasciculatus_F_contig14105:2108..2340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14105 2109..2340 -
1695995744.878201-CDS-E-fasciculatus_F_contig14105:2108..23401695995744.878201-CDS-E-fasciculatus_F_contig14105:2108..2340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14105 2109..2340 -
1622927902.4026456-CDS-E-fasciculatus_F_contig14105:2720..28121622927902.4026456-CDS-E-fasciculatus_F_contig14105:2720..2812Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14105 2721..2812 -
1695995744.888611-CDS-E-fasciculatus_F_contig14105:2720..28121695995744.888611-CDS-E-fasciculatus_F_contig14105:2720..2812Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14105 2721..2812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14105.3006.1

>prot_E-fasciculatus_F_contig14105.3006.1 ID=prot_E-fasciculatus_F_contig14105.3006.1|Name=mRNA_E-fasciculatus_F_contig14105.3006.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=210bp
MRSYAVAAFFLASVVESFHVSTVGRPHEFRSRSSSRAGGASLSPLRMGAP
SLPSAESLRKTAASTAAALLIAFSPAVASYQHAFAADRAGAQELSPAEML
VKKTTDMQRKRLKDESQKQLQGDVTMQEGDLIARVLVSIKQELYDLGAPD
TSGFPAVDTDEARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTADDLA
FPLTKDAWRL
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mRNA from alignment at E-fasciculatus_F_contig14105:1..2812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14105.3006.1 ID=mRNA_E-fasciculatus_F_contig14105.3006.1|Name=mRNA_E-fasciculatus_F_contig14105.3006.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2812bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14105:1..2812- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGTCGTACGCAGTTGCGGCTTTCTTCTTGGCGAGCGTGGTCGAGTC
CTTCCACGTCAGTACGGTCGGGAGGCCGCATGAGTTTCGCAGGTGCATCC
AAAGTAAAGTAAACGAGCGAGCGTCGCTCATGTTACTCTCTCTTCTTTGT
CTTGGTTGTTGAGGACACAAAACGTGAAAACTTTGAAACCACAACGGTCC
ATTGCGGTTCACCAGTGTCATTCGTGGGCGGGATGGGGTTTTCGGTGTCG
TCACCATGTACGTGGTGAAACCTGGTGCCTCTCGTGCGCTACTGGTTGGA
CTTCTAGGCCTGTTATCGCCAGGAGTTGGCTGCAAACAGACGTACAGCAA
GGTTCTGACTCCGTTTGCAGCGGTGTCTCTGACTGGAGATGATGCAGGAG
AGAGCATGACACCTCTCCCCACGCGCGACCTACCCGCCACACCGCCGTCC
GCGTGCCTGCACGCCGCGGTAGCAGGAGTAGCAGCAGGGCCGGTGGTGCT
TCGTTGTCGCCCTTGCGTATGGGCGCACCGTCGCTCCCAAGCGCCGAGAG
CTTGAGGAAAACCGCTGCGAGCACGGCGGCGGCGTTGCTCATCGCCTTCT
CCCCCGCGGTGGCCTCGTACCAGCATGCGTTCGCCGCTGATAGAGCCGGG
GCGCAGGAGCTGTCTCCGGCCGAGATGCTCGTCAAGAAGACGACTGACAT
GCAGGTTGGCTATTAGTAGTCTAGCAGCATACGTACATCTACACCCCCTG
CGAGTGGGTGTTGCGTACGTTTGTTCGAGAGATTTATCTGTCGACGTGCG
TTGTCGGCGTTGCACGTGGAAGCGCGCTTGCTATGTAGCTCTACAGCAGC
AGGAAGCTGTCGCGCTGACTTGACCTGACAGCATGTTTGACTTGGACAGC
GGAATTCTCCAGGGAGGTAAGAGATTGTGCAACGATTTTGAGATTGTTTT
TCTGGAAAGAGGGTAGGCTGGCGTTTGACCCACCCCAACATAACATAGAT
GACGCAGCATACCACTCTCCCTCTTCCACGGACGAAACTCAGATGACGCC
CGGTTTGCCATTTCCCCGACAACTGGGAAGAGTCTGACGGAAAGCACACG
ATGGCGCGGAAACTCTTGAATATCTTGCCGGTTGCCTTAGCGTTGCTTCT
GTTTTGGAACACACACACAATCAAAGAGGAACTACAACCGTTCGAGATAA
AGCCAACCCCTTTGTTCAAGTCGTCTCTTCAGCAGTTGAGTGTCGAGGGA
AGCCTGCTGGTATCATGTGTTCTATATTGTGAATGTCACCTCTGGAGACA
CCCGTCTCACAGTATGCATAGTACTTATTTGTTGCGGAAATACTCTTCCG
GTGATCACGATGTCCCGCGGCGTAATTCCTCAATAGCGTACGACATTGCG
TCGGCTAAGGATTCCACGGCGCACAGCAGTCGCTTTGATTTACGAGTAGC
GCGTCTCCGGTGCCTCTGACTGCTGTTGTACGGCTGTGTTTGTGTTTGAG
TGTCTGTTCAAATGGCTCCAGTATGTTGCCGTGCTTGGTGTCCTCGCAAC
GATACAGCAGTCTCGAGATCGCCTCTGGTCCCACACACTCGCATCTGCTA
AGAAACGTACGATGATGGTTGTCGTCCATTTGTGAACACCCATCCTTTTC
ATGTAGTGGAGTTACTCGCAATAGAAAACCGTCCGTAACATGGTTAATAT
ACTTGGTTCCCAGAACGTTTAACAGCAGCGTGAGCCTGCCGCTTTTACCT
CTTCTTGCTGCCGGCGCCCCCAAAACAGAGAAAGAGGCTGAAGGACGAGT
CCCAGAAGCAGCTCCAGGGGGACGTCACTATGCAGGAAGGGGATCTTATC
GCGAGGGTGAGAGTGTTGATAATATTGGGGCATGCACGTGGTTCGATTTG
GGCTCAAACTGACGCGCCACGCCTTTGCCGCCTGGGAGTTCGCTTCTTGG
TATATAGTTTGCGTAGTACATCTGCGTGTGCTCGGGTTAGCCCCTCCGTG
TTCCTTGTTGTGCCCCGCCGCACAAGCGGCAGGTTGCAAAATCTGCGTGC
TCTATACGTCCCACACACTGAGGTTACGAGCCTTTCATTGTCTCATGGAG
TATTAGTAGCAATGGCTGACATGGCTCTCCCGGGCGCCGGCCGGAAAATG
AACAATTAAAGGTTCTGGTATCGATCAAGCAAGAACTGTACGATCTGGGA
GCCCCCGACACGAGCGGATTTCCCGCGGTAGACACCGACGAAGCGAGGCT
GATCGTAGCCGCCTTCGGGAAGGATGGCCCGCCGGTGGCGGCGAAGCGGC
TTACCGTCAAGGGGAGGCAGTTCCCGGTGACGGTTGAGCTGACCGCGGAC
GACCTGGCCTTTCCGTTGACGAAGGTAAGGAGGAGGGGGAGGGGGAAGGG
GAGAAGGAAGAGAAAGTGGTTAGTGTCGGGCAACTTGGTTGTCGGTGTGC
GTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGT
TGTTGTTGTTATGCCGGCGTCATCTGGGGGCGAGTTGGCCTTTCCATTGA
ACGTGACGAAGAAGAAGAGGAAGAAAGGCGAAGAGATGATTCGTGATTGG
TGCTCGTGGTGTTGTACCGCGGGTGTGTCGGTGGCAGGTGACGTTGCTGT
CCCTGCGGAGGTAGATGCCGGCGCTACTGCGACCTCCTTTGCAGGTTCTC
TTTATCGCCCACGCCGAATGCCCCCTCGCCCCGCAGCGATAAGAGTTCAC
TTGGTTCCGCCGCCAAAGCACTTGATTGCATGCCATCTTGTCGATAGGAC
GCGTGGAGGCTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14105:1..2812-

>mRNA_E-fasciculatus_F_contig14105.3006.1 ID=mRNA_E-fasciculatus_F_contig14105.3006.1|Name=mRNA_E-fasciculatus_F_contig14105.3006.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1260bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14105:1..2812- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGTCGTACGCAGTTGCGGCTTTCTTCTTGGCGAGCGTGGTCGAGTC
CTTCCACGTCAGTACGGTCGGGAGGCCGCATGAGTTTCGCAGATGCGGTC
GTACGCAGTTGCGGCTTTCTTCTTGGCGAGCGTGGTCGAGTCCTTCCACG
TCAGTACGGTCGGGAGGCCGCATGAGTTTCGCAGCAGGAGTAGCAGCAGG
GCCGGTGGTGCTTCGTTGTCGCCCTTGCGTATGGGCGCACCGTCGCTCCC
AAGCGCCGAGAGCTTGAGGAAAACCGCTGCGAGCACGGCGGCGGCGTTGC
TCATCGCCTTCTCCCCCGCGGTGGCCTCGTACCAGCATGCGTTCGCCGCT
GATAGAGCCGGGGCGCAGGAGCTGTCTCCGGCCGAGATGCTCGTCAAGAA
GACGACTGACATGCAGCAGGAGTAGCAGCAGGGCCGGTGGTGCTTCGTTG
TCGCCCTTGCGTATGGGCGCACCGTCGCTCCCAAGCGCCGAGAGCTTGAG
GAAAACCGCTGCGAGCACGGCGGCGGCGTTGCTCATCGCCTTCTCCCCCG
CGGTGGCCTCGTACCAGCATGCGTTCGCCGCTGATAGAGCCGGGGCGCAG
GAGCTGTCTCCGGCCGAGATGCTCGTCAAGAAGACGACTGACATGCAGAG
AAAGAGGCTGAAGGACGAGTCCCAGAAGCAGCTCCAGGGGGACGTCACTA
TGCAGGAAGGGGATCTTATCGCGAGGAGAAAGAGGCTGAAGGACGAGTCC
CAGAAGCAGCTCCAGGGGGACGTCACTATGCAGGAAGGGGATCTTATCGC
GAGGGTTCTGGTATCGATCAAGCAAGAACTGTACGATCTGGGAGCCCCCG
ACACGAGCGGATTTCCCGCGGTAGACACCGACGAAGCGAGGCTGATCGTA
GCCGCCTTCGGGAAGGATGGCCCGCCGGTGGCGGCGAAGCGGCTTACCGT
CAAGGGGAGGCAGTTCCCGGTGACGGTTGAGCTGACCGCGGACGACCTGG
CCTTTCCGTTGACGAAGGTTCTGGTATCGATCAAGCAAGAACTGTACGAT
CTGGGAGCCCCCGACACGAGCGGATTTCCCGCGGTAGACACCGACGAAGC
GAGGCTGATCGTAGCCGCCTTCGGGAAGGATGGCCCGCCGGTGGCGGCGA
AGCGGCTTACCGTCAAGGGGAGGCAGTTCCCGGTGACGGTTGAGCTGACC
GCGGACGACCTGGCCTTTCCGTTGACGAAGGACGCGTGGAGGCTAGACGC
GTGGAGGCTA
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