mRNA_E-fasciculatus_F_contig14053.2972.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14053.2972.1
Unique NamemRNA_E-fasciculatus_F_contig14053.2972.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14053.2972.1 vs. uniprot
Match: D8LKE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE7_ECTSI)

HSP 1 Score: 483 bits (1242), Expect = 3.690e-171
Identity = 236/274 (86.13%), Postives = 248/274 (90.51%), Query Frame = 1 
Query:    1 AHAQATGGFAGPGSLIDGGVMGGFGFTEVDIQPWGEIELTDANLGSAYVSGKFVRHDGAALPSSAAVFFYIDNADQPDDFARGKFEMRGTSGDFSMVVMDIPPGNSRLFLSFVITDPAQALTVAAEVVPATSIFSLDISNMGCAPSLTITHEWIGGNFAGLEVTEPDLTAINSARWDVSGGVGVFQDNWAGSSPTAKRYILYSGLDVDTNQVLGEYKGAKFLPFLDSETPPTWRITARVSGEIVYMYQEEQVQSDIVEFTVLLTDYDPSCGVPP 822
            A  +ATGGFAGPGSLIDGGVMGGFG TEVDIQPWGEIELTDANLGS YVSGKFVRHD AALP S+AVFFYI+NADQPDDFARG F++RG SGD SM+V D+PPGNSRLFLSFVI DPA+AL VAAEVVPATSIFSLDISNMGC PSLTITHEWIGGNFA  E+TEPDL  INS   DVSGGVGVFQDNWAGSSP AKRYILYSGLDVDT+QVLGEYKG  FLPF+ SETPPTWR TARVSGEIVYMY+EEQVQSD VEFTVLLTDYDPSCGVPP
Sbjct:    6 ASPKATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVRHDSAALPFSSAVFFYIENADQPDDFARGSFKIRGASGDLSMLVTDVPPGNSRLFLSFVIEDPAEALNVAAEVVPATSIFSLDISNMGCVPSLTITHEWIGGNFAPYEITEPDLNTINSDHGDVSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRMFLPFVTSETPPTWRSTARVSGEIVYMYKEEQVQSDTVEFTVLLTDYDPSCGVPP 279
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BLAST of mRNA_E-fasciculatus_F_contig14053.2972.1 vs. uniprot
Match: A0A6H5JLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL4_9PHAE)

HSP 1 Score: 481 bits (1238), Expect = 7.530e-160
Identity = 236/272 (86.76%), Postives = 247/272 (90.81%), Query Frame = 1 
Query:    7 AQATGGFAGPGSLIDGGVMGGFGFTEVDIQPWGEIELTDANLGSAYVSGKFVRHDGAALPSSAAVFFYIDNADQPDDFARGKFEMRGTSGDFSMVVMDIPPGNSRLFLSFVITDPAQALTVAAEVVPATSIFSLDISNMGCAPSLTITHEWIGGNFAGLEVTEPDLTAINSARWDVSGGVGVFQDNWAGSSPTAKRYILYSGLDVDTNQVLGEYKGAKFLPFLDSETPPTWRITARVSGEIVYMYQEEQVQSDIVEFTVLLTDYDPSCGVPP 822
            A ATGGFAGPGSLIDGGVMGGFG TEVDIQPWGEIELTDANLGS YVSGKFVRHD A LP S+AVFFYI+NADQPDD ARG  ++RGTSGDFSMVVMD+PPGNSRLFLSFVI DPA+AL VAAEVVPATSIFSL ISNM C PSLTITHEWIGGNFA  E+TEPDLT I+S   + SGGVGVFQDNWAGSSP AKRYILYSGLDVDT+QVLGEYKG KFLP L SETPPTWRITARVSGEIVYMY+EEQVQSDIVEFTVLLTDYDPSCGVPP
Sbjct:  812 ADATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVRHDSAPLPFSSAVFFYIENADQPDDIARGSSKIRGTSGDFSMVVMDVPPGNSRLFLSFVIKDPAEALNVAAEVVPATSIFSLQISNMACVPSLTITHEWIGGNFAPYEITEPDLTTIHSGHGNYSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRKFLPILPSETPPTWRITARVSGEIVYMYKEEQVQSDIVEFTVLLTDYDPSCGVPP 1083
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BLAST of mRNA_E-fasciculatus_F_contig14053.2972.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 1.310e-54
Identity = 125/279 (44.80%), Postives = 161/279 (57.71%), Query Frame = 1 
Query:    7 AQATGGFAGPGSLIDGGVMGGFGFTEVDIQPWGEIELTDANLGSAYVSGKFVRHDGAALPSSAAVFFYIDNADQPDDFARGKFEMRGTSGDFSMVVMDIPPGNSRLFLSFVITDPAQALTVAAEVVPATSIFSLDISNMGCAPSLTITHEWIGGNFAGLEVTEPDLTAINSARWDV-----SGGVGVFQ-DNWAGSSPTAKRYILYSGLDVDTNQVLGEYKGAKFLPFLDSETPPTWRITARVSGEIVYMYQEEQVQSDIVE-FTVLLTDYDPSCGVPP 822
            A A GGFAGPGSL                 P G I+LT+ + GS  +SG FVR DGAALPSS +VF Y +N  QPDDF RG+  +  ++G FS VV DIP G+SRL LSFV+ DPA+AL  A     A + F+LD+SN  C PSLTIT EW G      E+++ DL  +      V      G VG    D+  G  P  + YI+ S LD   +QVLGEY+    L   D+ T  TWR+TARVSGE+V++ + + + S   + F V L+ YDP+CG  P
Sbjct:  189 ADAMGGFAGPGSLTT--------------TPAGTIQLTEEDGGSVSLSGTFVRDDGAALPSSTSVFIYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEALDTAG----ADTAFALDVSNSACVPSLTITLEWTG------EISDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGP--ENYIIDSALDPAASQVLGEYETYVKLYSGDAATE-TWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYDPTCGGVP 440
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BLAST of mRNA_E-fasciculatus_F_contig14053.2972.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 3.230e-53
Identity = 125/275 (45.45%), Postives = 159/275 (57.82%), Query Frame = 1 
Query:    7 AQATGGFAGPGSLIDGGVMGGFGFTEVDIQPWGEIELTDANLGSAYVSGKFVRHDGAALPSSAAVFFYIDNADQPDDFARGKFEMRGTSGDFSMVVMDIPPGNSRLFLSFVITDPAQALTVAAEVVPATSIFSLDISNMGCAPSLTITHEWIGGNF-AGLEVTEPDLTAINSARWDVSGGVGVFQ-DNWAGSSPTAKRYILYSGLDVDTNQVLGEYKGAKFLPFLDSETPPTWRITARVSGEIVYMYQEEQVQSDIVE-FTVLLTDYDPSCGVPP 822
            A A GGFAGPGSL                 P G I+LT+ + GS  +SG FVR DGAALPSS +VF Y +N  QPDDF RG+  +  ++G FS VV DIP G+SRL LSFV+ DPA+AL  A     A + F+LD+SN  C PSLTIT EW G      L V EP    +  +     G VG    D+  G  P  + YI+ S LD   +QVLGEY+    L   D+ T  TWR+TARVSGE+V++ + + + S   + F V L+ YDP+CG  P
Sbjct:  315 ADAMGGFAGPGSLTT--------------TPAGTIQLTEEDGGSVSLSGTFVRDDGAALPSSTSVFIYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEALDTAG----ADTAFALDVSNSACVPSLTITLEWTGETSDVDLYVVEPGGEVVYFSNR--GGDVGFLDNDDTYGFGP--ENYIIDSALDPAASQVLGEYETYVKLYSGDAATE-TWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYDPTCGGVP 566
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14053.2972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKE7_ECTSI3.690e-17186.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLL4_9PHAE7.530e-16086.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5D6_ECTSI1.310e-5444.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3X5_ECTSI3.230e-5345.45VWFD domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14053contigE-fasciculatus_F_contig14053:283..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue6.5e-47
Seed eggNOG ortholog2880.D7G3X5
KEGG koko:K22017
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4291@1,KOG4291@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002700.1
Exons2
Model size825
Cds size825
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927897.057035-CDS-E-fasciculatus_F_contig14053:282..5671622927897.057035-CDS-E-fasciculatus_F_contig14053:282..567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14053 283..567 -
1695995743.0216594-CDS-E-fasciculatus_F_contig14053:282..5671695995743.0216594-CDS-E-fasciculatus_F_contig14053:282..567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14053 283..567 -
1622927897.1266458-CDS-E-fasciculatus_F_contig14053:740..12801622927897.1266458-CDS-E-fasciculatus_F_contig14053:740..1280Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14053 741..1280 -
1695995743.0343244-CDS-E-fasciculatus_F_contig14053:740..12801695995743.0343244-CDS-E-fasciculatus_F_contig14053:740..1280Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14053 741..1280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14053.2972.1prot_E-fasciculatus_F_contig14053.2972.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14053 283..1280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14053.2972.1

>prot_E-fasciculatus_F_contig14053.2972.1 ID=prot_E-fasciculatus_F_contig14053.2972.1|Name=mRNA_E-fasciculatus_F_contig14053.2972.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=275bp
AHAQATGGFAGPGSLIDGGVMGGFGFTEVDIQPWGEIELTDANLGSAYVS
GKFVRHDGAALPSSAAVFFYIDNADQPDDFARGKFEMRGTSGDFSMVVMD
IPPGNSRLFLSFVITDPAQALTVAAEVVPATSIFSLDISNMGCAPSLTIT
HEWIGGNFAGLEVTEPDLTAINSARWDVSGGVGVFQDNWAGSSPTAKRYI
LYSGLDVDTNQVLGEYKGAKFLPFLDSETPPTWRITARVSGEIVYMYQEE
QVQSDIVEFTVLLTDYDPSCGVPP*
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mRNA from alignment at E-fasciculatus_F_contig14053:283..1280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14053.2972.1 ID=mRNA_E-fasciculatus_F_contig14053.2972.1|Name=mRNA_E-fasciculatus_F_contig14053.2972.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=998bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14053:283..1280- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCCACGCACAGGCGACGGGTGGCTTCGCTGGTCCGGGATCCCTCATCGA
CGGAGGGGTGATGGGCGGGTTTGGCTTTACCGAAGTGGACATACAACCAT
GGGGCGAGATCGAGCTCACTGACGCAAACCTCGGGTCCGCCTACGTGTCT
GGCAAGTTCGTCCGCCACGACGGCGCGGCTCTGCCCTCCTCGGCGGCCGT
CTTCTTCTACATCGACAACGCAGACCAGCCGGACGACTTTGCCCGCGGCA
AGTTCGAAATGCGAGGCACATCCGGAGATTTCTCGATGGTCGTGATGGAC
ATTCCCCCGGGAAACAGCAGGCTGTTCCTCAGCTTTGTCATCACAGATCC
CGCGCAGGCGCTGACCGTCGCGGCGGAGGTAGTACCGGCCACGTCAATAT
TCTCGCTTGACATCTCCAACATGGGATGCGCCCCGTCTTTGACCATCACC
CACGAGTGGATCGGTGGCAATTTTGCCGGCCTCGAGGTTACTGAACCCGA
CTTAACCGCCATCAACTCCGCCCGTTGGGACGTTTCCGGGGTAAGTGCGG
AGAGTGCTGCTTGCACGCGTGCGTCCTTGTCGGTGATGCGTGGTGTTGTC
TTGTTGTTGGCTGGCAATGCGCTTGCCTTAGTAAGCACGGTAGTATTCTC
GTCCCCGATCCCGCGGTACCCCAGCCCACCCCACGACACGGCGCATGATT
TGGCATTCGGCAGGGCGTCGGAGTCTTCCAGGACAACTGGGCAGGAAGCT
CACCCACGGCCAAAAGGTACATTCTCTACAGTGGGCTCGACGTCGACACC
AACCAGGTGCTGGGCGAGTACAAGGGTGCCAAGTTTTTACCCTTCCTCGA
CTCCGAAACCCCGCCGACTTGGCGTATTACCGCCCGCGTTTCCGGGGAGA
TCGTCTACATGTACCAGGAGGAACAGGTCCAATCCGACATTGTAGAGTTC
ACCGTGCTTCTGACTGACTACGATCCCAGTTGCGGCGTACCTCCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14053:283..1280-

>mRNA_E-fasciculatus_F_contig14053.2972.1 ID=mRNA_E-fasciculatus_F_contig14053.2972.1|Name=mRNA_E-fasciculatus_F_contig14053.2972.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1650bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14053:283..1280- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCCACGCACAGGCGACGGGTGGCTTCGCTGGTCCGGGATCCCTCATCGA
CGGAGGGGTGATGGGCGGGTTTGGCTTTACCGAAGTGGACATACAACCAT
GGGGCGAGATCGAGCTCACTGACGCAAACCTCGGGTCCGCCTACGTGTCT
GGCAAGTTCGTCCGCCACGACGGCGCGGCTCTGCCCTCCTCGGCGGCCGT
CTTCTTCTACATCGACAACGCAGACCAGCCGGACGACTTTGCCCGCGGCA
AGTTCGAAATGCGAGGCACATCCGGAGATTTCTCGATGGTCGTGATGGAC
ATTCCCCCGGGAAACAGCAGGCTGTTCCTCAGCTTTGTCATCACAGATCC
CGCGCAGGCGCTGACCGTCGCGGCGGAGGTAGTACCGGCCACGTCAATAT
TCTCGCTTGACATCTCCAACATGGGATGCGCCCCGTCTTTGACCATCACC
CACGAGTGGATCGGTGGCAATTTTGCCGGCCTCGAGGTTACTGAACCCGA
CTTAACCGCCATCAACTCCGCCCGTTGGGACGTTTCCGGGGCCCACGCAC
AGGCGACGGGTGGCTTCGCTGGTCCGGGATCCCTCATCGACGGAGGGGTG
ATGGGCGGGTTTGGCTTTACCGAAGTGGACATACAACCATGGGGCGAGAT
CGAGCTCACTGACGCAAACCTCGGGTCCGCCTACGTGTCTGGCAAGTTCG
TCCGCCACGACGGCGCGGCTCTGCCCTCCTCGGCGGCCGTCTTCTTCTAC
ATCGACAACGCAGACCAGCCGGACGACTTTGCCCGCGGCAAGTTCGAAAT
GCGAGGCACATCCGGAGATTTCTCGATGGTCGTGATGGACATTCCCCCGG
GAAACAGCAGGCTGTTCCTCAGCTTTGTCATCACAGATCCCGCGCAGGCG
CTGACCGTCGCGGCGGAGGTAGTACCGGCCACGTCAATATTCTCGCTTGA
CATCTCCAACATGGGATGCGCCCCGTCTTTGACCATCACCCACGAGTGGA
TCGGTGGCAATTTTGCCGGCCTCGAGGTTACTGAACCCGACTTAACCGCC
ATCAACTCCGCCCGTTGGGACGTTTCCGGGGGCGTCGGAGTCTTCCAGGA
CAACTGGGCAGGAAGCTCACCCACGGCCAAAAGGTACATTCTCTACAGTG
GGCTCGACGTCGACACCAACCAGGTGCTGGGCGAGTACAAGGGTGCCAAG
TTTTTACCCTTCCTCGACTCCGAAACCCCGCCGACTTGGCGTATTACCGC
CCGCGTTTCCGGGGAGATCGTCTACATGTACCAGGAGGAACAGGTCCAAT
CCGACATTGTAGAGTTCACCGTGCTTCTGACTGACTACGATCCCAGTTGC
GGCGTACCTCCGTGAGGCGTCGGAGTCTTCCAGGACAACTGGGCAGGAAG
CTCACCCACGGCCAAAAGGTACATTCTCTACAGTGGGCTCGACGTCGACA
CCAACCAGGTGCTGGGCGAGTACAAGGGTGCCAAGTTTTTACCCTTCCTC
GACTCCGAAACCCCGCCGACTTGGCGTATTACCGCCCGCGTTTCCGGGGA
GATCGTCTACATGTACCAGGAGGAACAGGTCCAATCCGACATTGTAGAGT
TCACCGTGCTTCTGACTGACTACGATCCCAGTTGCGGCGTACCTCCGTGA
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