mRNA_E-fasciculatus_F_contig1405.2968.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1405.2968.1
Unique NamemRNA_E-fasciculatus_F_contig1405.2968.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1405.2968.1 vs. uniprot
Match: A0A6H5JAS9_9PHAE (Glyco_18 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAS9_9PHAE)

HSP 1 Score: 445 bits (1144), Expect = 9.350e-154
Identity = 224/249 (89.96%), Postives = 233/249 (93.57%), Query Frame = 1
Query:    1 QIVPRVVLELRQGSALSQADLREMAELLVAEAVQRGYDGYVLDIPLSDGIEEFVSGIKRAASRRGEDLILIQSVRPGVSLSAHLKDRLVPLIHRFSLMTYDYRPSDIPQGASHGQRRGGGGVPNSPLSWVRECVETFAPGGPGSELREKTLIGLPFYGYDNGRAITSGDVVSLLSGGNVLPGGLEWDSEWREHILSFRERGDVGGMEEHVATFPTLAFIQERIDLASELGVGVALWELGQGMPYWFDLL 747
            +IVPRVVLELRQGSALS+ADLREMAELLVAEAVQRGYDGYVLDIPLSDGIEEFVSGI+RAASRRGEDLILIQSVRPGVSLSAHL DRLVPLIHRFSLMTYDYRPSD  QGA HG RRG GGVPNSPLSWVRECVE FAP G GSELR KTLIG+PFYGYDNGRAITSGDVVSLL+GG VLP GLEWDSEW+EHILS+RER    GM+EHVATFPTLAFIQERIDLASELGVG+ALWELGQGMPYWFDLL
Sbjct:  224 KIVPRVVLELRQGSALSRADLREMAELLVAEAVQRGYDGYVLDIPLSDGIEEFVSGIERAASRRGEDLILIQSVRPGVSLSAHLTDRLVPLIHRFSLMTYDYRPSDNSQGAFHGHRRGVGGVPNSPLSWVRECVEAFAPRGRGSELRAKTLIGIPFYGYDNGRAITSGDVVSLLTGGKVLPAGLEWDSEWKEHILSYRERR-AEGMQEHVATFPTLAFIQERIDLASELGVGLALWELGQGMPYWFDLL 471          
BLAST of mRNA_E-fasciculatus_F_contig1405.2968.1 vs. uniprot
Match: A0A1Z5L6F2_ORNMO (Methylthioribose-1-phosphate isomerase (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L6F2_ORNMO)

HSP 1 Score: 137 bits (346), Expect = 7.640e-35
Identity = 94/270 (34.81%), Postives = 138/270 (51.11%), Query Frame = 1
Query:    1 QIVPRVVLEL-----RQGSALSQADLREMAELLVAEAVQRGYDGYVLDI------PLSDGIEEFVSGIKRAASRRGEDLILI------QSVRPGVSLSAHLKDRLVPLIHRFSLMTYDYRPSDIPQGASHGQRRGGGGVPNSPLSWVRECVETFAPGGPGSELREKTLIGLPFYGYD----NGRAITSGDVVSLLSGGNVLPGGLEWDSEWREHILSFRERGDVGGMEEHVATFPTLAFIQERIDLASELGVGVALWELGQGMPYWFDLL 747
            +IVPRV+ E         +A S   ++++A+ L   A+  G+ GYV++I       + + +   +  + +       DLIL+          PG+   A+  D L+  +  FSLMTYDY         S  QR G    P+SP+SWVR+CVE  +P G G E R+K L+GL FYGYD     G  I     V+ LS    +   + WD E  EH   ++          H   +PTL  IQ+R+DLA ELG G+++WE+GQG+ Y++DLL
Sbjct:  143 KIVPRVLFENWSARDLSSTASSTTRMQQVADALKKLALDSGFGGYVIEIWSQFGGQMPNDMTTVIKYLAKKLKAASLDLILVVPPPVYHGNAPGMFTKANF-DELLDHVTAFSLMTYDY---------SSPQRPG----PSSPISWVRKCVEMLSPDGNG-EARKKILLGLNFYGYDYTSTGGAPIVGNQFVNELS---KVKAKVRWDPESAEHFFEYKNSDG-----RHTVFYPTLHSIQQRLDLAQELGTGISIWEIGQGLDYFYDLL 389          
BLAST of mRNA_E-fasciculatus_F_contig1405.2968.1 vs. uniprot
Match: G4ZE89_PHYSP (GH18 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZE89_PHYSP)

HSP 1 Score: 127 bits (318), Expect = 1.330e-32
Identity = 77/227 (33.92%), Postives = 120/227 (52.86%), Query Frame = 1
Query:   82 LVAEAVQRGYDGYVLDIPLSDGIEEFVSGIKRAASRRGEDLILI--QSVRPG-VSLSAHLKDRLVPLIHRFSLMTYDYRPSDIPQGASHGQRRGGGGVPNSPLSWVRECVETFAPGGPGSELREKTLIGLPFYGYDNGRAITSGDVVSLLSGGNVLPGGLEWDSEWRE--HILSFRERGDVGGMEEHVATFPTLAFIQERIDLASELGVGVALWELGQGMPYWFDLL 747
            ++A   +  +DG V +IP++ G  + +  + RA     + LIL+  +S   G + ++  L   L PL+HRFS+  YD+                    PN+P  W+++ +E  +P       R++ L+GLPFYGYDNG AIT    +  L   +V    + WDS   E  H+ + ++ G       HV  FP L F+Q+R+ L  E GVGVA+WELGQG+ +++DLL
Sbjct:    1 MLALTNEHDFDGMVFEIPVTAGTLDMLQQMGRAFRAADKLLILVLSRSTNEGELPVTHELFAELAPLVHRFSMNAYDFSAPG----------------PNAPYPWLKKTLEKMSP-----MERQRILLGLPFYGYDNGDAITGSTYIQSLKDNDVSK--IRWDSTAHECQHVYTAQDTGS-----HHVVFFPCLQFLQDRLKLYKERGVGVAIWELGQGLDFFYDLL 199          
BLAST of mRNA_E-fasciculatus_F_contig1405.2968.1 vs. uniprot
Match: UPI000258F919 (chitinase domain-containing protein 1 isoform X1 n=2 Tax=Megachile rotundata TaxID=143995 RepID=UPI000258F919)

HSP 1 Score: 127 bits (319), Expect = 6.690e-31
Identity = 92/245 (37.55%), Postives = 127/245 (51.84%), Query Frame = 1
Query:   61 LREMAELLVAEAVQRGYDGYVLDIP---LSDGIEE--FVSGIKRAASR-RGEDLILIQSVRPGVSLSAHLK-----DRLVPLIHRFSLMTYDYRPSDIPQGASHGQRRGGGGVPNSPLSWVRECVETFAP-GGPGSELREKTLIGLPFYGY----DNGRAITSGDVVSLLSGGNVLPGGLEWDSEWREHILSFRERGDVGGMEEHVATFPTLAFIQERIDLASELGVGVALWELGQGMPYWFDLL 747
            L E+   L+  A    +DGYVL+I    +  G++    +S +K  A +    +L+ I +V P       L      D+L P I  FSLMTYDY  S I       QR G    PNSP+ WVRECV+   P  GP    R + L+GL FYGY    + GRAI   D + +L       G ++WD   +EH    +  G  G     +  +PTL  I  R+DLA+ELG G+++WELGQG+ Y++DLL
Sbjct:  173 LSELISSLIDTAEVYHFDGYVLEIWNQFIFTGVDTQIVISLVKSIAQQLNNNNLVTILAVPPSRGPKVQLFNKDHFDQLSPYIKAFSLMTYDY--STI-------QRPG----PNSPVDWVRECVKLLVPEDGP---KRAQILLGLNFYGYNYTPEGGRAILGTDYLKMLES---FKGKIQWDDNSKEHFFEAKSSGGSG-----IVFYPTLYSILHRLDLAAELGTGISIWELGQGLHYFYDLL 393          
BLAST of mRNA_E-fasciculatus_F_contig1405.2968.1 vs. uniprot
Match: A0A654HEI0_9CEST (GH18 domain-containing protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HEI0_9CEST)

HSP 1 Score: 126 bits (317), Expect = 8.690e-31
Identity = 79/227 (34.80%), Postives = 113/227 (49.78%), Query Frame = 1
Query:  109 YDGYVLDIPLSDGIEEFVSGIKRAASRRGED-LILIQSVRPGV-------SLSAHLKDRLVPLIHRFSLMTYDYRPSDIPQGASHGQRRGGGGVPNSPLSWVRECVETFAPGGPGSELREKTLIGLPFYGYD------NGRAITSGDVVSLLSGGNVLPGGLEWDSEWREHILSFRERGDVGGMEEHVATFPTLAFIQERIDLASELGVGVALWELGQGMPYWFDLL 747
            +DG VL+I +     E +  I+R + R  E+ + ++ ++ P V       S +    D L   +  FSLMTYDY    +P              PNSP+ WVRECVE   P G  ++LR K L+GL FYGYD      +G  I   + V ++   +       W+SEW EH + F +        EHV  FPT   I  RI L  ELG G+A+WE+GQG+  +++ L
Sbjct:  163 FDGIVLEIWMQHSGTELMLFIRRLSKRLHENNMAIVLAIPPPVYQGGYTGSFAREHFDFLSSDVDFFSLMTYDYSNPYMPG-------------PNSPIKWVRECVELLVPSGSNNDLRSKILVGLNFYGYDLVPNQRSGHPILGHEFVKMVDKHHPK---FRWNSEWAEHYIEFEDSSG----HEHVVYFPTTLSIARRISLIQELGTGLAIWEIGQGLDSFYEQL 369          
BLAST of mRNA_E-fasciculatus_F_contig1405.2968.1 vs. uniprot
Match: A0A6A3U5T2_9STRA (GH18 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U5T2_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.720e-31
Identity = 84/253 (33.20%), Postives = 131/253 (51.78%), Query Frame = 1
Query:    4 IVPRVVLELRQGSALSQADLREMAELLVAEAVQRGYDGYVLDIPLSDGIEEFVSGIKRAASRRGEDLILI--QSVRPG-VSLSAHLKDRLVPLIHRFSLMTYDYRPSDIPQGASHGQRRGGGGVPNSPLSWVRECVETFAPGGPGSELREKTLIGLPFYGYDNGRAITSGDVVSLLSGGNVLPGGLEWDSEWRE--HILSFRERGDVGGMEEHVATFPTLAFIQERIDLASELGVGVALWELGQGMPYWFDLL 747
            +VPRVV E    + LS  D+  + E ++A   +  +DG V +IP++ G    +  + RA     + LIL+  +S   G + ++  +   L PL+HRFS+  YD+                    PN+P  W+++ +E  +P       R+K L+G+PFYGYDNG AIT    +  L   +V    + WD    E  H+ + ++ G       HV  FP L F+Q+R+ L    GVGVA+WELGQG+ +++DLL
Sbjct:  189 VVPRVVYE---RNRLSSEDVPVIIEKMLALTNEHDFDGMVFEIPVTAGTLHMLQLMGRAFRAADKLLILVLSRSSNEGELPVTHEIFADLAPLVHRFSMNAYDFSAPG----------------PNAPYPWLKKTLEKMSP-----MERQKILLGVPFYGYDNGDAITGTTYIQSLKDNDVSK--IRWDPTAHECQHVYTAQDTGS-----HHVVFFPCLQFLQDRLTLYKGHGVGVAIWELGQGLGFFYDLL 410          
BLAST of mRNA_E-fasciculatus_F_contig1405.2968.1 vs. uniprot
Match: UPI0003F0BE85 (chitinase domain-containing protein 1 n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F0BE85)

HSP 1 Score: 126 bits (317), Expect = 1.380e-30
Identity = 86/248 (34.68%), Postives = 131/248 (52.82%), Query Frame = 1
Query:   58 DLREMAELLVAEAVQRGYDGYVLDI------PLSDGIEEFVSGIKRAA--SRRGEDLILIQSVRPG---VSLSAHLK-DRLVPLIHRFSLMTYDYRPSDIPQGASHGQRRGGGGVPNSPLSWVRECVETFAPGGPGSELREKTLIGLPFYGYDNGRAITSGDVVSLLSGGNVLP------GGLEWDSEWREHILSFRERGDVGGMEEHVATFPTLAFIQERIDLASELGVGVALWELGQGMPYWFDLL 747
            ++ E+++ LV  A  + +DG+V+++          G+   ++ +  A   +R    L++  SV PG   + +  H + ++L P++  FSLMTYDY  +  P              PN+PLSWVR CV+      P S+ R K L+GL FYG D     TS D    + G   +         L WDS+  EH+  +++    GG   HV  +PTL  IQ R+DLA ELGVG+++WELGQG+ Y++DLL
Sbjct:  173 EIEELSKALVQVAKNQHFDGFVVEVWSQLLGQKQAGLVHMLTHVAEALHQARLLAILVIPPSVTPGTHQLGMFTHKELEQLAPVLDGFSLMTYDYSSAQQPG-------------PNAPLSWVRACVQIL---DPKSKWRSKILLGLNFYGMDYS---TSRDAREPVVGSRYIQMLKEHRPQLVWDSQAAEHVFEYKKSR--GGR--HVVFYPTLKSIQVRLDLARELGVGISIWELGQGLDYFYDLL 397          
BLAST of mRNA_E-fasciculatus_F_contig1405.2968.1 vs. uniprot
Match: UPI0005F0753A (chitinase domain-containing protein 1 n=2 Tax=Wasmannia auropunctata TaxID=64793 RepID=UPI0005F0753A)

HSP 1 Score: 125 bits (315), Expect = 1.470e-30
Identity = 87/230 (37.83%), Postives = 120/230 (52.17%), Query Frame = 1
Query:  109 YDGYVLDI---------PLSDGIEEFVSGIKRAASRRGEDLILIQSVRPGVSLSAHLK---DRLVPLIHRFSLMTYDYRPSDIPQGASHGQRRGGGGVPNSPLSWVRECVETFAPGGPGSELREKTLIGLPFYGY----DNGRAITSGDVVSLLSGGNVLPGGLEWDSEWREHILSFRER-GDVGGMEEHVATFPTLAFIQERIDLASELGVGVALWELGQGMPYWFDLL 747
            +DGYVL++          LS  I   V  I R   +   D+IL      G  L    K   D L P ++ FSLMTYDY  S I       QR G    PNSPL W R+CVE  AP       R + L+G+ FYGY    + G+AI + + + +L    +  G + WD+  +EH    R   G+V G+      +PTL  I+ R+DLA+ELG G+++WELGQG+ Y++DLL
Sbjct:  152 FDGYVLEMWNQFVFAGANLSI-ITSIVKSIARRLKKHNLDIILAVPPSRGAQLELFSKQQFDELAPYVNTFSLMTYDY--SSI-------QRPG----PNSPLEWARQCVELLAP-EKNDPRRSQILLGINFYGYNYTPEGGKAILASEYLDILK---LFKGKIRWDNSSKEHFFEPRLTIGNVRGIS--YIFYPTLYSIKARLDLANELGTGISIWELGQGLNYFYDLL 361          
BLAST of mRNA_E-fasciculatus_F_contig1405.2968.1 vs. uniprot
Match: A0A671SBB5_9TELE (Chitinase domain-containing protein 1-like n=12 Tax=Cyprininae TaxID=2743694 RepID=A0A671SBB5_9TELE)

HSP 1 Score: 125 bits (315), Expect = 1.940e-30
Identity = 83/240 (34.58%), Postives = 124/240 (51.67%), Query Frame = 1
Query:   49 SQADLREMA--ELLVAEAVQRGYDGYVLDIPLSDGIEEFVSGIKRAASRRGEDLILIQSVRPGVSLSAHLKDRLVPLIHRFSLMTYDYRPSDIPQGASHGQRRGGGGVPNSPLSWVRECVETFAPGGPGSELREKTLIGLPFYG-----YDNGRAITSGDVVSLLSGGNVLPGGLEWDSEWREHILSFRERGDVGGMEEHVATFPTLAFIQERIDLASELGVGVALWELGQGMPYWFDLL 747
            S+ ++ E+   EL VA+A   G+DGY L++    G  +  +             ++  S +PG+       ++L P++  FSLMTYDY   D P              P++PL W+RECV   AP    S+ R K L+G+  YG     +D    +  G  V LL    V P  L+WD    EH  +++  G      +HV  +PTL F+Q R+DLA+ELG G+++WELGQG+ Y++DLL
Sbjct:  165 SEDEMEELGREELEVAKA--EGFDGYTLELWSQLGGNKRNTSYALILFPSAPVCVVFSSGQPGMFEREDF-EKLAPVVDAFSLMTYDYSGPDRPG-------------PSAPLPWIRECVLQLAP---HSQWRHKILLGINLYGLDFSSHDGAEPLLGGRYVELLK--EVKP-KLQWDENTGEHFFNYKSNG-----LKHVVYYPTLKFLQFRMDLAAELGTGISMWELGQGLDYFYDLL 377          
BLAST of mRNA_E-fasciculatus_F_contig1405.2968.1 vs. uniprot
Match: K3WM23_GLOUD (GH18 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM23_GLOUD)

HSP 1 Score: 126 bits (317), Expect = 1.990e-30
Identity = 82/256 (32.03%), Postives = 133/256 (51.95%), Query Frame = 1
Query:    1 QIVPRVVLELRQGSALSQADLREMAELLVAEAVQRGYDGYVLDIPLSDGIEEFVSGIKRAASRRGEDLILI--QSVRPG-VSLSAHLKDRLVPLIHRFSLMTYDYRPSDIPQGASHGQRRGGGGVPNSPLSWVRECVETFAPGGPGSELREKTLIGLPFYGYDNGRAITSGDVVSLLSGGNVLPGGLEWDSE----WREHILSFRERGDVGGMEEHVATFPTLAFIQERIDLASELGVGVALWELGQGMPYWFDLL 747
            +IVPRVV E    + L+  D+  +   L+  A +  +DG+V +IP+ +G  + +  +  A     + L+L+  +S + G + ++  + D+L+PL+HRFS+  YDY+                   PN+P  W++  +            +EK L+G+PFYGYDN  A+T    +S L   +V    + WD+       E+  SF       G + HVA FP L F+ +R+ L  + GVG A+WELGQG+ Y++DLL
Sbjct:  199 KIVPRVVYE---RNKLASTDVPLIITQLLDLAEEHAFDGFVFEIPVVEGTMDLLLRMGDAFQDAKKLLLLVLNRSTKGGKLPITHDMFDQLLPLVHRFSMNAYDYQTPG----------------PNAPFLWLQTTLNALT-----DAEKEKILLGVPFYGYDNTDAVTGPSFISTLKNEDVKK--IRWDANAHECHHEYYTSF-------GGDHHVAFFPCLQFLYDRLQLYEQNGVGAAIWELGQGLDYFYDLL 421          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1405.2968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAS9_9PHAE9.350e-15489.96Glyco_18 domain-containing protein n=2 Tax=Ectocar... [more]
A0A1Z5L6F2_ORNMO7.640e-3534.81Methylthioribose-1-phosphate isomerase (Fragment) ... [more]
G4ZE89_PHYSP1.330e-3233.92GH18 domain-containing protein n=1 Tax=Phytophthor... [more]
UPI000258F9196.690e-3137.55chitinase domain-containing protein 1 isoform X1 n... [more]
A0A654HEI0_9CEST8.690e-3134.80GH18 domain-containing protein n=1 Tax=Sparganum p... [more]
A0A6A3U5T2_9STRA8.720e-3133.20GH18 domain-containing protein n=2 Tax=Phytophthor... [more]
UPI0003F0BE851.380e-3034.68chitinase domain-containing protein 1 n=1 Tax=Elep... [more]
UPI0005F0753A1.470e-3037.83chitinase domain-containing protein 1 n=2 Tax=Wasm... [more]
A0A671SBB5_9TELE1.940e-3034.58Chitinase domain-containing protein 1-like n=12 Ta... [more]
K3WM23_GLOUD1.990e-3032.03GH18 domain-containing protein n=1 Tax=Globisporan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1405contigE-fasciculatus_F_contig1405:356..4853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score458.4
Seed ortholog evalue2.2e-126
Seed eggNOG ortholog2880.D7FL31
Preferred nameCHID1
KEGG rclassRC02795
KEGG koko:K03046,ko:K17525
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
GOsGO:0000323,GO:0001817,GO:0001818,GO:0002576,GO:0003674,GO:0003824,GO:0004553,GO:0004568,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005770,GO:0005773,GO:0005775,GO:0005794,GO:0005802,GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006040,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006954,GO:0008061,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0016192,GO:0016787,GO:0016798,GO:0017144,GO:0030246,GO:0031347,GO:0031348,GO:0031410,GO:0031974,GO:0031982,GO:0031984,GO:0032101,GO:0032102,GO:0032940,GO:0042737,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044248,GO:0044421,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046348,GO:0046903,GO:0048519,GO:0048583,GO:0048585,GO:0050727,GO:0050728,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0065007,GO:0070013,GO:0070492,GO:0071704,GO:0080134,GO:0097367,GO:0097708,GO:0098791,GO:1900015,GO:1900016,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.chitinase activity
EggNOG OGsKOG2091@1,KOG2091@2759
EC2.7.7.6
COG Functional cat.P
CAZyGH18
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400,ko04091
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionchitinase-domain containing protein
Ec32 orthologEc-05_006850.1
Exons6
Model size750
Cds size750
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1405.2968.1prot_E-fasciculatus_F_contig1405.2968.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1405 356..4853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927896.5383005-CDS-E-fasciculatus_F_contig1405:355..4621622927896.5383005-CDS-E-fasciculatus_F_contig1405:355..462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 356..462 +
1695995742.7777245-CDS-E-fasciculatus_F_contig1405:355..4621695995742.7777245-CDS-E-fasciculatus_F_contig1405:355..462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 356..462 +
1622927896.555376-CDS-E-fasciculatus_F_contig1405:797..9061622927896.555376-CDS-E-fasciculatus_F_contig1405:797..906Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 798..906 +
1695995742.7938838-CDS-E-fasciculatus_F_contig1405:797..9061695995742.7938838-CDS-E-fasciculatus_F_contig1405:797..906Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 798..906 +
1622927896.5684466-CDS-E-fasciculatus_F_contig1405:1465..15771622927896.5684466-CDS-E-fasciculatus_F_contig1405:1465..1577Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 1466..1577 +
1695995742.8026342-CDS-E-fasciculatus_F_contig1405:1465..15771695995742.8026342-CDS-E-fasciculatus_F_contig1405:1465..1577Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 1466..1577 +
1622927896.5827017-CDS-E-fasciculatus_F_contig1405:2515..26591622927896.5827017-CDS-E-fasciculatus_F_contig1405:2515..2659Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 2516..2659 +
1695995742.8108964-CDS-E-fasciculatus_F_contig1405:2515..26591695995742.8108964-CDS-E-fasciculatus_F_contig1405:2515..2659Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 2516..2659 +
1622927896.595291-CDS-E-fasciculatus_F_contig1405:3553..37411622927896.595291-CDS-E-fasciculatus_F_contig1405:3553..3741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 3554..3741 +
1695995742.8190541-CDS-E-fasciculatus_F_contig1405:3553..37411695995742.8190541-CDS-E-fasciculatus_F_contig1405:3553..3741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 3554..3741 +
1622927896.60687-CDS-E-fasciculatus_F_contig1405:4763..48531622927896.60687-CDS-E-fasciculatus_F_contig1405:4763..4853Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 4764..4853 +
1695995742.8282328-CDS-E-fasciculatus_F_contig1405:4763..48531695995742.8282328-CDS-E-fasciculatus_F_contig1405:4763..4853Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 4764..4853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1405.2968.1

>prot_E-fasciculatus_F_contig1405.2968.1 ID=prot_E-fasciculatus_F_contig1405.2968.1|Name=mRNA_E-fasciculatus_F_contig1405.2968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=250bp
QIVPRVVLELRQGSALSQADLREMAELLVAEAVQRGYDGYVLDIPLSDGI
EEFVSGIKRAASRRGEDLILIQSVRPGVSLSAHLKDRLVPLIHRFSLMTY
DYRPSDIPQGASHGQRRGGGGVPNSPLSWVRECVETFAPGGPGSELREKT
LIGLPFYGYDNGRAITSGDVVSLLSGGNVLPGGLEWDSEWREHILSFRER
GDVGGMEEHVATFPTLAFIQERIDLASELGVGVALWELGQGMPYWFDLL*
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mRNA from alignment at E-fasciculatus_F_contig1405:356..4853+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1405.2968.1 ID=mRNA_E-fasciculatus_F_contig1405.2968.1|Name=mRNA_E-fasciculatus_F_contig1405.2968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1405:356..4853+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATTGTTCCTCGTGTGGTGTTAGAGCTGAGGCAAGGCTCTGCTCTTTC CCAAGCTGACCTTCGGGAGATGGCAGAGCTGCTTGTGGCGGAGGCTGTGC AAAGAGGGTGAGATGCCCTGTGCCCTGCAGCTTTTTGGTTTCCTCTCACC CCCCTGTTGTGACTGCCTATCCCAGACCCAAGATCGTTCTTGTCTTGGTG TTTGTTTGGTGAAAAAAAACGTATGGGCCACGTTTCCCCTCTGCCCTATA CCCAGCAGGGTGGGTCATGCAGGTGATGCTCGTCAAAGCCATAACGCTGG GTTGGTTCCGCGGCTGTTTACCCGCACAATAGCCTCTGCCTCTCCGGCAT GGAGTGCACTCTTCCGGCTCACTTGGCCGAGAGGTGGCGCTAGTCGTCAT TTTTTTTTTCTATACTTTTTTGTTGACAAACTTGACTTTCAGGTACGACG GGTACGTGCTGGACATCCCTCTGTCCGACGGCATCGAGGAGTTCGTGTCT GGAATAAAGAGAGCCGCTTCGAGGAGGGGTGAAGACCTAATACTCATACA GGTGCTATAGCTTGCCTTCGATCATAGTGAGACCTGGGTGGTGAAAAGTC ATTCGAAGATACTCGTGCACAACGACGCCTTAGATGGTCAACGCTGTATC GCAGCGTGCGCCAGAACGATGGAGGACAAGGCATGCATGTATGACAAGCA CTCATGAGCTGTGTGCTCTGGGTTCGGAAGACTTTACATCGGCTAAACAA TCCTGCTGCTGGACACCGGTTTTCATGGGAGCAGAATGTTGCAAAAAAAG CTGCAAACACAGTTGCAAACTTTTTCCCCAACTTTCGTCAAATGAACTTT GGGTGCACGCTCATTATGGGGCGACGAAAGTTTTGTGCACTGGACTGTTG GAATGCAAACGTTTGGACACAATTTTGATGTAAGTGGTTTCGAGAGCTAT GCATACAACAGTTATCTTTGTCACTCCGTCGTGCGTTGGGGTTACGGTAC ATGTACTGTACCCCGGACGTGCCCCCTCCCCTTTTCTCGTATTCTGCAGC TCAGCATTTCTCTCCCCCTGCCCAACGTTCCTTGGACGTTCCTATCAATC AATCAAACAGTCCGTGAGACCGGGCGTTTCTCTGTCAGCACACCTGAAGG ATCGGCTTGTTCCTCTCATCCACCGATTCTCGCTCATGACCTACGACTAC CGGCCGTCGGACATTCCCCAAGGTATGCGTGCGTACATAGGGGGTGTTCG GTAGTGATCTGCGGGGTCTCCGGGGGGTTACGATGTATGATGATGTGGGT ATGGTTGACATGATGCGTGGGCCCCCTCTGGCCCCCGCATGAGCCGTGAC GGCCTTGAGTCAACGTTCTTTCTCTTTCAGCATTTGACGAACCTGCTGCA CCCAAATACATGGATGCCACGAATTATTTCATCTTCATTACTCTTCCTTT CATGTTGTGTGAAGCGCCGGTGTCTCATTTACAAGATCAGATCATTTTCC CTTCTCTTGTGCTACGGTTGTTAGCGTTCACTGATGCGGCATCGCGCGTT TTCCGGGCACGATCAAATTCCATGTACAATTTCCGCCAGGGTTTAGTATC GCTACGGATAGTCGGCTGCTTCGTGAGTAAGTATTCAAATATCACAGGTC GGCAGCCGGCCGTTTCAGATTTCAGATTTGCTGCATTGGGCTGTTCAGGG CCGGAGAAACGATAGTGAGCCCAGTGAAAAATGTTGGTATGTTCATGCGA TCTGTTGTCGATGTTGTGTGGAGGACGCGATGCTGTTGACACCATTACTC TTGGCTTGAAAGTTGTTGGTATGTGTTGGTATGTGTTGCGTTGTGTTGTG TTGTGTTGTCTCTTGCTGGTATGTTCATGCGGTCTGTTGTCAACATCGTC TTGTGATCTATCTGTGCGTGTTCTGTCGGGGTGTACGTATGAAACGACGC TATTACGGTTGAGACGTATGATTTCTATCCCAATCGCGGAAAGTTGGTTT GTGATTTAAGTTGGTTTCTCCACGCCCAATATGCTATATGTATGGAACGC AGTGAAGTTCATGTTTCTTGAAGTGGGGGAATGTGCAAGTACCCTGCTTG GCGAACGAGTACATCCACGTTATTGTACAACTCTCTCTGCTGTTGGCGTG TTTCAAACAGGTGCATCCCACGGGCAAAGAAGAGGAGGCGGTGGCGTCCC CAACAGCCCACTTTCGTGGGTGCGAGAGTGTGTTGAGACTTTCGCTCCTG GTGGACCAGGGAGCGAGCTGCGCGAGAAGACTCTTATCGGCCTCCCGTTC TACGGTGAGAGAAGATTGTTATTGTTTCCTGTCGACATGGCGAACGTAGG AAACCGCTCACGTGAAGAGACATCCATGCGTGTGTCCACCCATTTCGCGT CTTCCCGCGCTTGACTACATCTGAAATGGAAGGCATTCGAACTTTGGAAG GAGTTGGTCAGACAAGTGTTCACGGCTGCATCATTGTGTCCGTGAAGGGA AGAGCATTGGTTGCTGTCATGGAACTCTTCGTGCTTTGGGATGAAGGAAC TTACCTATTATTAAGTTCGGACTCGCCAGAGATCGGAAGGGGTTTCCGTT AGGTCTGTGTTACAATGTTACAATAGCTCAGCGAAAAGAGGTGCATTGCT TGATTTTGATAACTGCTGACGAATTTCTGATCGATCGCCCCGTCGTCCCC GCGGAATCGTTTGGCATTGTTCTGTTCTGTTCTGCGCGGTTGAAGCTGCC CTTGTTCGCCAATATTTCCGTGACGATGGCTTGACGCTCTCTCTATCCTC GTCTGTCGTGTCCCCACAACATCTTAAGATCTTGAGATCTTGATGAGATC TTGATGAGATCTTGATGAGATCTTGATGAGATCTTGATGAGATCTTGATG AGATCTTGATGAGATCTCGACGTGGTTGTTCCCACCCCACTAACGTTACA GTTACAGTTACAGTAGCCTCACCTCACACCTTGCAGTAGCCTCACCTCAC ACCTTGCAGTAGCCTCACCTCACACCTTGCTGGAGTCAGAACAAACAGAA CAGCGAGGGTCGAACAAAAACAGTTTCTGGTACAGTATCAAACCAATACA TACCGTATCCCCTAGGACCCCAACTCTGAATCAATCGTGTTTGTGTTTGT GCCATACATGGTGACATGGTGACATGACATCGCATTCTCATCACACAGGG TACGACAATGGTCGAGCCATCACATCAGGGGACGTGGTTTCGCTACTCTC AGGCGGCAACGTCCTCCCCGGTGGTCTCGAGTGGGACTCAGAGTGGAGGG AACACATCCTTTCTTTCCGGGAGAGGGGTGATGTGGGGGGCATGGAGGAG CACGTCGCGACGTTCCCCACACTGGCCTTCATACAGGTGAGAAGTGGCTT CTGTAAGCACGTGTTCGTGTAACACCGACGGATGACTCACTCACCCAGCC CCTTCCTCCGACCTGTAGTTCCTGTTCTCTTCTCTGTTCTGTTCTGTATA TACTCTCGCCAGCTTTAGCTTTACGATCGATGTGTCCGGGTTCGAGGTAT TTCTACGCAGAATGTTTGCTTTTCGCTACAGACAGCCAGACACGTCCGGA CTCAAAAGTGCCGCAGTGCCGCAGCGTATGGCACCGCGGGCCCCAATGTA GCACATGAAAGAAAGTTGGTGTCGAGCAAATCCCAATCACGGTAGGCACA GACCTTTTCGCATTTCTTGGGTGTCACGCGTCGTGAATGATGTTGTGATG TTGACTCGACGCGTGTGTACGATTTTGTCTGCCGTCTCAAGTTCATAGTT CATAAGGGGGAGGTACGGTACGGTACGGTACGGTTGCTTGTGTTCTGTGG AGGCCGTGTTGCCCACAACGACGACAAGGGTATGTAGACGATCTCGATCT TGTACTTTTATGATAACCCGGGGGTACATGTAGCGCCGGCCTCAACTGAA GCCCTCTTCCTTTTTTCGAGGTAGGATAGGGTGTATGTCTATGTGGGGTA TGATGCGAGCTACTCTGACGTATGGAGAGGACGTTGCACTCTTACAGTAT TCTCGGCTAGTCTTGTTGTCTGGTCTGTAGGAGGTGTGGGGTATGATTCG AGTTGCGCCGCCGTATTGAGAGAATCTTGCACTTTTATCGCTACGCCTTC GCTTTGCCAATCTTGGTGTCTGGTCTGTGGGTGTGTCCGTCCGGCGGTGC TGTCTTCTCTGTGAGTATCTCTTCCTCCTAACGGTATTGGTCAGAAGGCA AGGCAAGACCAGGCCAAGTGCTCACTGCTCACTGCATGTGTTGGGGTTGG GGTTGGGTTACTACTACAGAGGTTCTCGCAAGGTGACCCGGTCTTGTCTT GTCTTCCCACGATGTCCTTCCCGCAACGCCGGTGCCAATTCTCTACCTCC CACGTCAGGAGCGGATCGATTTGGCGTCGGAGCTCGGCGTCGGTGTGGCC CTGTGGGAGCTCGGTCAAGGGATGCCGTACTGGTTCGATCTCCTGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1405:356..4853+

>mRNA_E-fasciculatus_F_contig1405.2968.1 ID=mRNA_E-fasciculatus_F_contig1405.2968.1|Name=mRNA_E-fasciculatus_F_contig1405.2968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1500bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1405:356..4853+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATTGTTCCTCGTGTGGTGTTAGAGCTGAGGCAAGGCTCTGCTCTTTC
CCAAGCTGACCTTCGGGAGATGGCAGAGCTGCTTGTGGCGGAGGCTGTGC
AAAGAGGCAGATTGTTCCTCGTGTGGTGTTAGAGCTGAGGCAAGGCTCTG
CTCTTTCCCAAGCTGACCTTCGGGAGATGGCAGAGCTGCTTGTGGCGGAG
GCTGTGCAAAGAGGGTACGACGGGTACGTGCTGGACATCCCTCTGTCCGA
CGGCATCGAGGAGTTCGTGTCTGGAATAAAGAGAGCCGCTTCGAGGAGGG
GTGAAGACCTAATACTCATACAGGTACGACGGGTACGTGCTGGACATCCC
TCTGTCCGACGGCATCGAGGAGTTCGTGTCTGGAATAAAGAGAGCCGCTT
CGAGGAGGGGTGAAGACCTAATACTCATACAGTCCGTGAGACCGGGCGTT
TCTCTGTCAGCACACCTGAAGGATCGGCTTGTTCCTCTCATCCACCGATT
CTCGCTCATGACCTACGACTACCGGCCGTCGGACATTCCCCAAGTCCGTG
AGACCGGGCGTTTCTCTGTCAGCACACCTGAAGGATCGGCTTGTTCCTCT
CATCCACCGATTCTCGCTCATGACCTACGACTACCGGCCGTCGGACATTC
CCCAAGGTGCATCCCACGGGCAAAGAAGAGGAGGCGGTGGCGTCCCCAAC
AGCCCACTTTCGTGGGTGCGAGAGTGTGTTGAGACTTTCGCTCCTGGTGG
ACCAGGGAGCGAGCTGCGCGAGAAGACTCTTATCGGCCTCCCGTTCTACG
GTGCATCCCACGGGCAAAGAAGAGGAGGCGGTGGCGTCCCCAACAGCCCA
CTTTCGTGGGTGCGAGAGTGTGTTGAGACTTTCGCTCCTGGTGGACCAGG
GAGCGAGCTGCGCGAGAAGACTCTTATCGGCCTCCCGTTCTACGGGTACG
ACAATGGTCGAGCCATCACATCAGGGGACGTGGTTTCGCTACTCTCAGGC
GGCAACGTCCTCCCCGGTGGTCTCGAGTGGGACTCAGAGTGGAGGGAACA
CATCCTTTCTTTCCGGGAGAGGGGTGATGTGGGGGGCATGGAGGAGCACG
TCGCGACGTTCCCCACACTGGCCTTCATACAGGGTACGACAATGGTCGAG
CCATCACATCAGGGGACGTGGTTTCGCTACTCTCAGGCGGCAACGTCCTC
CCCGGTGGTCTCGAGTGGGACTCAGAGTGGAGGGAACACATCCTTTCTTT
CCGGGAGAGGGGTGATGTGGGGGGCATGGAGGAGCACGTCGCGACGTTCC
CCACACTGGCCTTCATACAGGAGCGGATCGATTTGGCGTCGGAGCTCGGC
GTCGGTGTGGCCCTGTGGGAGCTCGGTCAAGGGATGCCGTACTGGTTCGA
TCTCCTGTAGGAGCGGATCGATTTGGCGTCGGAGCTCGGCGTCGGTGTGG
CCCTGTGGGAGCTCGGTCAAGGGATGCCGTACTGGTTCGATCTCCTGTAG
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