mRNA_E-fasciculatus_F_contig1400.2938.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1400.2938.1
Unique NamemRNA_E-fasciculatus_F_contig1400.2938.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1400.2938.1 vs. uniprot
Match: D7FU99_ECTSI (Similar to DNA primase large subunit, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU99_ECTSI)

HSP 1 Score: 740 bits (1910), Expect = 2.790e-264
Identity = 400/481 (83.16%), Postives = 420/481 (87.32%), Query Frame = 3 
Query:  105 METRNPPGLYVDPPAFDIELEEFGTLPLRRLEAVRLLREGPTTP--VSEASSAQKALTADARLLLLHGHGDRPSEVKHHRADLASHFILKLACCGGKGGEVQPETEASTRDDRSSRCEEVDRRSSRREWFVRAERDLFEARLHWHLRQNEGGGSKKGIAARGTGGTSSADLGTRASNADRSEALRLFYNLEWLQPVGPAAPGYSRVEKKRENGQERPYTSEGGGANSADGRXXXXXXXXXXXXXXAGRRRQDGDDPFREHSRSSTPGACSSGDASHVTLERPLPPSSKRKMLPQSFAVKGGGDIRYVSCPFEKILPLVRSRRVLLRDGKALLSPVQVPEAVVQHFEGRLREGIAVAERGLPGVEADVRVAEVLRQVRRAVDSLVSGGWRHGRDADNRSTVAITRKNIDQLAEKNFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKGMPADEYARKRNQLSAL 1541
            MET  PPGLYVDPP FDIELEEFGTLP+RRLEAVRLLREG TTP  V EAS AQKALTADARLLLLHGHGDRPSE K+ RADLASHFILKLACCG  GG VQP TEAS RDD S RCEEVDRRSSRREWFVRAERDLFEARLHWHL+QNEGGGSK+GIA R  GG SSADLG RAS ADR EALR+FYNLEWLQPVGPAAP  SR+EK+RE+G E  +  EG   +S  G+  XXXXXXXXXXXX      DGDDPFREHSRS +PGACS GDASHVTLER LPPSS+RK LP+S A KGG DI Y+SCPFEK+LPLVRSRRVLLRDGKALLSP Q+PEAVVQHFEGRLREG+A+AERGLPGVEADVRVAEVLRQVR AVDSLVSGG R G DADNRS   ITRKNIDQLAEK+FPLCMRRTLRILRREHHLKYQARLQLISFL NAGMEVDEILGLWREEFPKGMPADEYARKRNQLSAL
Sbjct:    1 METCKPPGLYVDPPDFDIELEEFGTLPMRRLEAVRLLREGQTTPAQVPEASPAQKALTADARLLLLHGHGDRPSEAKNQRADLASHFILKLACCGATGGGVQPGTEASKRDDSSGRCEEVDRRSSRREWFVRAERDLFEARLHWHLQQNEGGGSKEGIAGRCNGGASSADLGARASIADRLEALRIFYNLEWLQPVGPAAPDCSRMEKQRESGHEGSHAREGVCTSSYGGKGCXXXXXXXXXXXXXXXXXXDGDDPFREHSRSYSPGACSRGDASHVTLERQLPPSSERKKLPESVAFKGGSDIGYLSCPFEKVLPLVRSRRVLLRDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQLSAL 481
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1400.2938.1 vs. uniprot
Match: A0A2L2YIM2_PARTP (DNA primase large subunit n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YIM2_PARTP)

HSP 1 Score: 100 bits (250), Expect = 8.000e-19
Identity = 59/173 (34.10%), Postives = 88/173 (50.87%), Query Frame = 3 
Query: 1011 RYVSCPFEKILPLVRSRRVLLRDGKALLSPVQVPEAVVQHFEGRLREGIAVAERGLPGVEADVRVAEVLRQVRRAVDSLVSGGWRHGRDADNRS---TVAITRKNIDQLAEKNFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKGMPADEYARK 1520
            ++   PF ++L L+++R+V L  G A +    +   VV  +   L   +AV  R LP +E D R+  +L  + +            G D  N+    T  IT   ID L++  FPLCMR     LR+ HHLKY  RLQ   FL   G+ +D+ L  WREEF K M +D++ ++
Sbjct:  190 KFYKVPFTEVLDLIKNRKVYLERGLAYIPEEDLVVTVVSAYRAHLSHALAVTSRALPQLEEDTRLISMLSTLHQRYI---------GTDYSNKKASFTGEITPDQIDNLSKVAFPLCMRNLHETLRKNHHLKYNGRLQYGLFLKGIGLSLDDALRFWREEFTKVMDSDKFDKQ 353
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1400.2938.1 vs. uniprot
Match: A0A3Q2Q406_FUNHE (DNA primase large subunit n=3 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2Q406_FUNHE)

HSP 1 Score: 99.0 bits (245), Expect = 3.140e-18
Identity = 61/187 (32.62%), Postives = 100/187 (53.48%), Query Frame = 3 
Query:  960 KRKMLPQSFAVKGGG-DIRYVSCPFEKILPLVRSRRVLLRDGKALLSPVQVPEAVVQHFEGRLREGIAVAERGLPGVEADVRVAEVLRQVRRAVDSLVSGGWRHGRDADNRSTVA-ITRKNIDQLAEKNFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKG-MPADEY 1511
            K ++L  S  V G   +  +   PF+  L LVR+R+V L++G A +   ++   V+  F  RL + +A+  R LP V +D R+  +L  +  +           G+D   +  V  I+ + ID LA K+FPLCMR+  + LR  HHL+Y  R+Q   FL   G+ +++ L  W+ EF +G + AD++
Sbjct:  159 KNELLNSSHGVSGVSLEHDFYKVPFQDALDLVRTRKVYLKEGYAYIPQSEIVAIVLNDFRTRLSKALALTARSLPAVHSDERLQPLLNHLSHSY---------FGQDYSGQKNVGKISLEQIDSLAGKSFPLCMRQLHKALRENHHLRYGGRMQYGLFLKGIGLSLEQALQFWKMEFIQGKVDADKF 336
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1400.2938.1 vs. uniprot
Match: A0A3Q2DE49_CYPVA (DNA primase large subunit n=3 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2DE49_CYPVA)

HSP 1 Score: 97.8 bits (242), Expect = 7.440e-18
Identity = 63/188 (33.51%), Postives = 100/188 (53.19%), Query Frame = 3 
Query:  960 KRKMLPQSFAVKGGG--DIRYVSCPFEKILPLVRSRRVLLRDGKALLSPVQVPEAVVQHFEGRLREGIAVAERGLPGVEADVRVAEVLRQVRRAVDSLVSGGWRHGRDADNRSTVA-ITRKNIDQLAEKNFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKG-MPADEY 1511
            K K+L  S+ V G    +  +   PF+  L LVR+R+V L+DG A +    +   V+  F  RL + +A+  R LP V +D R+  +L  +  +           G+D   +  V  I+ + ID LA K+FPLCMR+  + LR  HHL++  R+Q   FL   G+ +++ L  WR EF +G + AD++
Sbjct:  158 KEKLLNSSYIVSGVTLENEDFYKVPFQDALDLVRARKVYLKDGYAFIPHNDIVTIVLNDFRTRLSKALALTARSLPAVHSDERLQPLLNHLSHSY---------LGQDYSIQKNVGKISLEQIDSLAGKSFPLCMRQLHQALRENHHLRHGGRMQYGLFLKGIGLSLEQALQFWRMEFIRGKVDADKF 336
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1400.2938.1 vs. uniprot
Match: A0A0S7IPF4_9TELE (DNA primase large subunit (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7IPF4_9TELE)

HSP 1 Score: 94.4 bits (233), Expect = 2.310e-17
Identity = 56/164 (34.15%), Postives = 92/164 (56.10%), Query Frame = 3 
Query: 1026 PFEKILPLVRSRRVLLRDGKALLSPVQVPEAVVQHFEGRLREGIAVAERGLPGVEADVRVAEVLRQVRRAVDSLVSGGWRHGRDADNRSTVA-ITRKNIDQLAEKNFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKG-MPADEY 1511
            PF+  L LVR+R+V L++G A +   ++   V+  F  RL + +A+  R LP V +D R+  +L  +  +           G+D   +  V  I+ + ID LA K+FPLCMR+  + LR +HHL++  R+Q   FL   G+ +++ L  WR EF +G + AD++
Sbjct:   19 PFQDALDLVRTRKVYLKEGYAYIPQYEIVTIVLNDFRTRLSKALALTARTLPAVHSDERLQPLLNHLSHSY---------LGQDYSVQKNVGKISLEQIDSLAGKSFPLCMRQLHQALRDQHHLRHGGRMQYGLFLKGIGLSLEQALQFWRMEFTRGKVEADKF 173
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1400.2938.1 vs. uniprot
Match: A0A4Y2B4J4_ARAVE (DNA primase large subunit n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2B4J4_ARAVE)

HSP 1 Score: 96.3 bits (238), Expect = 2.440e-17
Identity = 57/173 (32.95%), Postives = 87/173 (50.29%), Query Frame = 3 
Query: 1011 RYVSCPFEKILPLVRSRRVLLRDGKALLSPVQVPEAVVQHFEGRLREGIAVAERGLPGVEADVRVAEVLRQVRRAVDSLVSGGWRHGRDADNRSTVAI---TRKNIDQLAEKNFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKGMPADEYARK 1520
            ++   PF ++L LV++R+V L  G A +    +   V+  +   L   +A+  R LP +E D R+  +L  + +            G D  N+    I   T   ID L++ +FPLCMR     LR+ HHLKY  RLQ   FL   G+ +D+ L  WREEF K M  D++ ++
Sbjct:  189 KFYKVPFIEVLDLVKNRKVFLEKGYAYIPEDDLVITVLSAYRAHLSHALAITSRALPQLEEDTRLISMLSTLHQRYI---------GTDYTNKKPNFIGDVTPDQIDSLSKTSFPLCMRNLHDTLRKNHHLKYNGRLQYGLFLKGIGLSLDDALRFWREEFTKVMDVDKFDKQ 352
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1400.2938.1 vs. uniprot
Match: A0A8H7Y5P3_PSICU (DNA primase large subunit n=1 Tax=Psilocybe cubensis TaxID=181762 RepID=A0A8H7Y5P3_PSICU)

HSP 1 Score: 95.5 bits (236), Expect = 3.430e-17
Identity = 54/170 (31.76%), Postives = 88/170 (51.76%), Query Frame = 3 
Query: 1011 RYVSCPFEKILPLVRSRRVLLRDGKALLSPVQVPEAVVQHFEGRLREGIAVAERGLPGVEADVRVAEVLRQVRRAVDSLVSGGWRHGRDADNRSTVAITRKNIDQLAEKNFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKGMPADEYARK 1520
            +Y    + ++  LV  R+V+L+ G A +   ++   V Q FE RL + +    R LP ++ D R+  +L  + +   S +S  W +     N   +    + ID LA+K+FPLCMR     L+R+HHLKY  R Q   FL   G+ ++E +  WR+ F  G   D++ +K
Sbjct:  175 KYYKVKWTRVPDLVEKRKVVLKGGWAYVPSRELSSIVFQEFEVRLEKALETTARLLPRLDEDTRIVPILDNLSQGFLSGISSDWANNSGQTNSDELKA--EQIDDLAKKHFPLCMRTLHSTLQRDHHLKYAGRQQYGLFLKVLGLSIEESVAFWRKSF-SGFTDDQFNKK 341
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1400.2938.1 vs. uniprot
Match: UPI001FAD3DAF (DNA primase large subunit isoform X1 n=3 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAD3DAF)

HSP 1 Score: 95.9 bits (237), Expect = 3.460e-17
Identity = 61/188 (32.45%), Postives = 101/188 (53.72%), Query Frame = 3 
Query:  960 KRKMLPQSFAVKGGG--DIRYVSCPFEKILPLVRSRRVLLRDGKALLSPVQVPEAVVQHFEGRLREGIAVAERGLPGVEADVRVAEVLRQVRRAVDSLVSGGWRHGRDADNRSTVA-ITRKNIDQLAEKNFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKG-MPADEY 1511
            K K+L  S+ + G    +  +   PF+  L LVR+R+V L++G A +   ++   V+  F  RL + +A+  R LP V +D R+  +L  +  +           G+D   +  V  I+ + ID LA K+FPLCMR+  + LR  HHL++  R+Q   FL   G+ +++ L  WR EF +G + AD++
Sbjct:  184 KEKLLISSYGINGVTLEEQDFYKVPFQDALDLVRTRKVYLKEGYAYIPHNEIVAIVLNDFRTRLSKALALTARSLPAVHSDERLQPLLNHLSHSY---------LGQDYSVQKNVGKISLEQIDSLAGKSFPLCMRQLHQALRDNHHLRHGGRMQYGLFLKGIGLSLEQALQFWRMEFIRGKVDADKF 362
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1400.2938.1 vs. uniprot
Match: A0A2R5GF95_9STRA (DNA primase large subunit n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GF95_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.470e-17
Identity = 60/178 (33.71%), Postives = 95/178 (53.37%), Query Frame = 3 
Query:  990 VKGGGDIRYVSCPFEKILPLVRSRRVLLRDGKALLSPVQVPEAVVQHFEGRLREGIAVAERGLPGVEADVRVAEVLRQVRRAVDSLVSGGWRHGRDADNRSTVAITRKNIDQLAEKNFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKG-MPADEYARK 1520
            VK    ++Y   PF ++L LV  R V L  G A +    +   +   F   + + +AVA + LP V  + R+  +L+++  A     S G  +G  AD   + ++T +NID+LA ++FPLCMR     ++REHHLK+  RLQ   FL  AG+ + + L  +  EF K  M  +E+ +K
Sbjct:  192 VKAFDRVQYFKVPFTEVLDLVSKRAVYLHRGIAFVPETDLVSILSSRFRAAMSQKLAVAYKSLPYVRQEERIRPILKKLENAYLG-PSYGLGNGNGADG--SASLTLENIDELAPRSFPLCMRNCHAHIKREHHLKHFGRLQFQLFLKGAGLTMQDCLNFFAREFTKKPMSHEEFNKK 366
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1400.2938.1 vs. uniprot
Match: A0A8K1FD44_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD44_PYTOL)

HSP 1 Score: 94.7 bits (234), Expect = 4.660e-17
Identity = 62/176 (35.23%), Postives = 91/176 (51.70%), Query Frame = 3 
Query: 1002 GDIRYVSCPFEKILPLVRSRRVLLRDGKALLSPVQVPEAVVQHFEGRLREGIAVAERGLPGVEADV-RVAEVLRQVRRAVDSLVSGGWRHGRDA--DNRSTVAITRKNIDQLAEKNFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVDEILGLWREEFPKGMPADEYARK 1520
            G  RY   PF +   LV  R VLL +G A ++   + E  V HF+  LR  +    R LP  +AD+ R++  L ++     SL      H   +    ++ + +T +NIDQ+AEK+FPLCM+   R  R  HHLKY  R+Q   FL   G  V E +  +R+EF K +P   + R+
Sbjct:  142 GSSRYFRVPFHEAARLVARRHVLLVNGFAWINENALKEIAVHHFKQILRAQLTALRRSLPAKKADMERLSPTLDKLLAESQSL------HPARSILQPKNQLRVTPENIDQVAEKHFPLCMKHLHRKFRANHHLKYDGRVQYRMFLKGLGFSVHESMMFFRDEFTKVLPQVRFDRE 311
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1400.2938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU99_ECTSI2.790e-26483.16Similar to DNA primase large subunit, partial n=2 ... [more]
A0A2L2YIM2_PARTP8.000e-1934.10DNA primase large subunit n=2 Tax=Parasteatoda tep... [more]
A0A3Q2Q406_FUNHE3.140e-1832.62DNA primase large subunit n=3 Tax=Fundulus heteroc... [more]
A0A3Q2DE49_CYPVA7.440e-1833.51DNA primase large subunit n=3 Tax=Cyprinodon TaxID... [more]
A0A0S7IPF4_9TELE2.310e-1734.15DNA primase large subunit (Fragment) n=1 Tax=Poeci... [more]
A0A4Y2B4J4_ARAVE2.440e-1732.95DNA primase large subunit n=1 Tax=Araneus ventrico... [more]
A0A8H7Y5P3_PSICU3.430e-1731.76DNA primase large subunit n=1 Tax=Psilocybe cubens... [more]
UPI001FAD3DAF3.460e-1732.45DNA primase large subunit isoform X1 n=3 Tax=Girar... [more]
A0A2R5GF95_9STRA4.470e-1733.71DNA primase large subunit n=1 Tax=Hondaea fermenta... [more]
A0A8K1FD44_PYTOL4.660e-1735.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1400contigE-fasciculatus_F_contig1400:10265..13378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score747.3
Seed ortholog evalue4.5e-213
Seed eggNOG ortholog2880.D7FU99
KEGG rclassRC02795
KEGG koko:K02685
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
EggNOG free text desc.DNA primase activity
EggNOG OGsCOG2219@1,KOG2267@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA primase large subunit, eukaryotic/archaeal
Ec32 orthologEc-18_001420.1
Exons4
Model size1775
Cds size1440
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1400.2938.1prot_E-fasciculatus_F_contig1400.2938.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1400 10369..12606 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927892.9921129-UTR-E-fasciculatus_F_contig1400:10264..103681622927892.9921129-UTR-E-fasciculatus_F_contig1400:10264..10368Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1400 10265..10368 +
1695995741.1626995-UTR-E-fasciculatus_F_contig1400:10264..103681695995741.1626995-UTR-E-fasciculatus_F_contig1400:10264..10368Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1400 10265..10368 +
1622927893.0553536-UTR-E-fasciculatus_F_contig1400:12606..126101622927893.0553536-UTR-E-fasciculatus_F_contig1400:12606..12610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1400 12607..12610 +
1695995741.206813-UTR-E-fasciculatus_F_contig1400:12606..126101695995741.206813-UTR-E-fasciculatus_F_contig1400:12606..12610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1400 12607..12610 +
1622927893.076482-UTR-E-fasciculatus_F_contig1400:13151..133781622927893.076482-UTR-E-fasciculatus_F_contig1400:13151..13378Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1400 13152..13378 +
1695995741.215275-UTR-E-fasciculatus_F_contig1400:13151..133781695995741.215275-UTR-E-fasciculatus_F_contig1400:13151..13378Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1400 13152..13378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927893.0104825-CDS-E-fasciculatus_F_contig1400:10368..105401622927893.0104825-CDS-E-fasciculatus_F_contig1400:10368..10540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 10369..10540 +
1695995741.1752408-CDS-E-fasciculatus_F_contig1400:10368..105401695995741.1752408-CDS-E-fasciculatus_F_contig1400:10368..10540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 10369..10540 +
1622927893.025762-CDS-E-fasciculatus_F_contig1400:10997..121691622927893.025762-CDS-E-fasciculatus_F_contig1400:10997..12169Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 10998..12169 +
1695995741.1859343-CDS-E-fasciculatus_F_contig1400:10997..121691695995741.1859343-CDS-E-fasciculatus_F_contig1400:10997..12169Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 10998..12169 +
1622927893.0430648-CDS-E-fasciculatus_F_contig1400:12510..126061622927893.0430648-CDS-E-fasciculatus_F_contig1400:12510..12606Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 12511..12606 +
1695995741.1965728-CDS-E-fasciculatus_F_contig1400:12510..126061695995741.1965728-CDS-E-fasciculatus_F_contig1400:12510..12606Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 12511..12606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1400.2938.1

>prot_E-fasciculatus_F_contig1400.2938.1 ID=prot_E-fasciculatus_F_contig1400.2938.1|Name=mRNA_E-fasciculatus_F_contig1400.2938.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=480bp
METRNPPGLYVDPPAFDIELEEFGTLPLRRLEAVRLLREGPTTPVSEASS
AQKALTADARLLLLHGHGDRPSEVKHHRADLASHFILKLACCGGKGGEVQ
PETEASTRDDRSSRCEEVDRRSSRREWFVRAERDLFEARLHWHLRQNEGG
GSKKGIAARGTGGTSSADLGTRASNADRSEALRLFYNLEWLQPVGPAAPG
YSRVEKKRENGQERPYTSEGGGANSADGRGRGGGGGSGSGGGSAGRRRQD
GDDPFREHSRSSTPGACSSGDASHVTLERPLPPSSKRKMLPQSFAVKGGG
DIRYVSCPFEKILPLVRSRRVLLRDGKALLSPVQVPEAVVQHFEGRLREG
IAVAERGLPGVEADVRVAEVLRQVRRAVDSLVSGGWRHGRDADNRSTVAI
TRKNIDQLAEKNFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMEVD
EILGLWREEFPKGMPADEYARKRNQLSAL*
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mRNA from alignment at E-fasciculatus_F_contig1400:10265..13378+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1400.2938.1 ID=mRNA_E-fasciculatus_F_contig1400.2938.1|Name=mRNA_E-fasciculatus_F_contig1400.2938.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3114bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1400:10265..13378+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCCTTTGCCGCTGCTCTCGCTCTGCTGGCCTGGCAGCTGCTGCTGCCA
CCCTGGCTCTCACTCTATGTATCCACTCTTCTCGTTTCCGGGTCTGCTGT
GGTGATGGAGACGCGTAACCCTCCAGGGTTGTATGTCGATCCGCCTGCTT
TCGACATCGAATTGGAGGAGTTCGGCACGTTGCCATTGCGTAGGTTAGAG
GCCGTTCGACTTCTACGCGAGGGACCAACAACGCCGGTGTCCGAGGCGAG
CTCGGCGCAAAAAGCGCTAACGGCCGGTGAGTCCTGTCTGGCTACACAAG
CATGAACCCCTTTTGCGTTTCGCGAGACAGCTATCCTTACAGGCCTTTCG
CCGGCCGGTTATGCTGTTTGTGGCCTGTAGCAAAGTAGTTCGAATGTAGT
TTCAAGGGAGAGTGTTTTTTTTTTGTCCGTGACTGACTCTATTGCTGCGA
CACCGTTACGGGCTTCGTCGACACAAGGCTACAGCAGCAGACTTCAACAA
GGTGTCTTTGCGAAGACGGAGTTCATGTTGTGAGGTGAATGTTGCACTGC
AAAATTGCCAGATCACCTCCTAATATTGCAACATTAAGCATTCGTTTCGC
AATACAAACTCGCTATGACGCCCCCAAATCGTATGTAATCTGCCTCAGCT
TATTCAGTTTCTCCGCACGAAGATCGTTTACAATACATGTACATGTTTGT
CGACGCACACTGTTTCCCACCGCCTTACGCTAGATGCTAGGCTGCTTCTC
CTCCACGGGCACGGCGATCGGCCCTCAGAGGTCAAGCATCACCGCGCAGA
CCTCGCGAGCCACTTCATACTGAAACTGGCGTGCTGTGGTGGAAAAGGCG
GGGAAGTACAACCGGAAACTGAAGCCAGCACTAGGGACGACAGAAGTAGT
CGGTGCGAGGAAGTTGACCGGAGGAGCAGCAGGCGGGAATGGTTCGTTCG
CGCAGAGAGGGACTTGTTTGAAGCCCGTCTCCACTGGCATCTCCGCCAAA
ACGAGGGGGGGGGCAGCAAGAAAGGAATCGCGGCGCGAGGTACGGGAGGA
ACAAGTAGTGCCGATCTTGGCACACGTGCGAGTAATGCCGACCGTTCGGA
GGCCCTGAGACTGTTTTACAACCTGGAATGGCTGCAGCCGGTTGGGCCGG
CAGCTCCGGGTTACAGCCGCGTGGAGAAGAAGAGAGAAAATGGGCAGGAA
CGCCCTTACACGAGTGAAGGCGGTGGCGCCAACAGTGCCGATGGTAGAGG
ACGTGGCGGTGGTGGTGGGAGTGGAAGCGGTGGAGGTAGCGCCGGTAGAA
GGCGACAAGACGGGGATGACCCCTTCCGAGAACACTCACGCTCATCTACT
CCTGGCGCGTGTTCAAGTGGCGATGCAAGTCACGTGACTCTTGAGCGACC
GCTGCCTCCTTCGTCAAAGAGGAAGATGCTACCCCAATCCTTTGCCGTCA
AAGGCGGTGGCGACATCAGATACGTATCGTGCCCGTTCGAGAAAATTCTT
CCGCTTGTCCGATCCCGACGTGTATTGCTTAGGGACGGGAAGGCGCTACT
CTCGCCGGTTCAAGTTCCTGAGGCAGTGGTACAGCACTTTGAAGGGCGTC
TTAGGGAGGGAATCGCCGTCGCGGAGCGCGGCTTGCCCGGGGTCGAGGCC
GACGTTAGGGTGGCGGAGGTTTTGAGACAGGTCAGGAGAGCAGTGGATTC
CTTGGTAAGCGGCGGCTGGCGGCATGGCCGTGACGCAGACAACCGATCGA
CGGTCGCAATCACCCGGAAAAACATCGACCAGCTTGCCGAGAAGAACTTC
CCGCTCTGCATGCGGAGAACGCTGCGCATCCTTCGACGTGAGCACCACCT
CAAGTATCAGGCGCGGCTGCAGCTCATCAGCTTCCTTGGGAACGCCGGGA
TGGAGGTGCGGGCTAGCGTCGCAGGAACAAGCTTGGTTACGATACATGTG
GCCCCGCGCCTGATCCAAGCCACGTTTCTCTCTGCGCTCCGCGCCGTGCA
TCGAATCTCGTCGGCATGTGTGGGGCGCATGAGTGCAAGTTCGGCGCCTT
GTGTGTCTGTTGTACAGCATTCTGTTTGAAAAGAGGGACAATTACAGTTC
CCTGATGGGTCGCTTAGCGCATCCCCAGAACAAATGATCGTGGATGAACC
TGAGGAAACCCATCTTGTTCATTCCCCTAGCTGCTTTTACATCCTTGCAC
AATGTCTCCGTGTCGCTGCTTGCTTGGGCGAGTGCGGCTTCGGCAGGTTG
ATGAGATTCTGGGTCTCTGGCGGGAGGAGTTCCCGAAAGGCATGCCGGCG
GACGAGTATGCTCGCAAGAGAAACCAGCTAAGCGCACTCTGACTTGGTGC
ATTTTAGAAGAAAGGGTAGATTGGGCGGAAACCATTCGCACGTGCGATTG
ATATATAGGTCGTGTAGGTTCGTTCTACTGGTTCTGAAAGTAGTTGATAC
TATGGTCGGCTCAGCAGCTCACCCTCCTCACAATAAGCAGGCCGATGTAG
CGCTAGCAACGCATTTTGTGGGAATGAGGAGTTGGGAATGATTTTGCATA
TCTGTACCTCAGATATTTGAAAACAGGAGGTGCTCCACAGAGGTTAGCAC
GGTTTTTTCGACATTCACACGGCAACAACAACGGGGGATATTCAAGAACT
TTCCTTTTGGGGATTCCGCTATGTGCTGCCGCCGGGAGCACTTTTGCATT
GTAACACTGCAGACACACCAAGCGCGCGCGGGAGACGACGCTTGGCACGT
ACAAATTCGTGGCGTTCGTCCTGGTGTAATGATGTTTTCCTGCGGATAAC
ACGTGGTTTGATCGCATATCGAAAGTTTGGCAGGAGGCTAACGCGTTGCC
CGCCCTCCCCCCAAAACTGGTTTCCGTTCCTCTCCAGATACGAATATAGT
CTTCGACACCTGTATGGCTTGGAGGGAAAGCGTACGGCATACCGCCCTCA
GTCCTGCGCCCGAATCGCTGCCGTGGGATGGGGTGGCTCAGGCGAAGGGG
GCTACGGCCACGGCTGCCCGTACCACTCCCGCCCGAAACAGGCAGGTGGC
GGCGGCAGCGGTAGCGGGCAATCAACGGCCGGCGGCTCGAGTGACACCAG
CCTTCGAGGTATGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1400:10265..13378+

>mRNA_E-fasciculatus_F_contig1400.2938.1 ID=mRNA_E-fasciculatus_F_contig1400.2938.1|Name=mRNA_E-fasciculatus_F_contig1400.2938.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2880bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1400:10265..13378+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGACGCGTAACCCTCCAGGGTTGTATGTCGATCCGCCTGCTTTCGA
CATCGAATTGGAGGAGTTCGGCACGTTGCCATTGCGTAGGTTAGAGGCCG
TTCGACTTCTACGCGAGGGACCAACAACGCCGGTGTCCGAGGCGAGCTCG
GCGCAAAAAGCGCTAACGGCCGATGGAGACGCGTAACCCTCCAGGGTTGT
ATGTCGATCCGCCTGCTTTCGACATCGAATTGGAGGAGTTCGGCACGTTG
CCATTGCGTAGGTTAGAGGCCGTTCGACTTCTACGCGAGGGACCAACAAC
GCCGGTGTCCGAGGCGAGCTCGGCGCAAAAAGCGCTAACGGCCGATGCTA
GGCTGCTTCTCCTCCACGGGCACGGCGATCGGCCCTCAGAGGTCAAGCAT
CACCGCGCAGACCTCGCGAGCCACTTCATACTGAAACTGGCGTGCTGTGG
TGGAAAAGGCGGGGAAGTACAACCGGAAACTGAAGCCAGCACTAGGGACG
ACAGAAGTAGTCGGTGCGAGGAAGTTGACCGGAGGAGCAGCAGGCGGGAA
TGGTTCGTTCGCGCAGAGAGGGACTTGTTTGAAGCCCGTCTCCACTGGCA
TCTCCGCCAAAACGAGGGGGGGGGCAGCAAGAAAGGAATCGCGGCGCGAG
GTACGGGAGGAACAAGTAGTGCCGATCTTGGCACACGTGCGAGTAATGCC
GACCGTTCGGAGGCCCTGAGACTGTTTTACAACCTGGAATGGCTGCAGCC
GGTTGGGCCGGCAGCTCCGGGTTACAGCCGCGTGGAGAAGAAGAGAGAAA
ATGGGCAGGAACGCCCTTACACGAGTGAAGGCGGTGGCGCCAACAGTGCC
GATGGTAGAGGACGTGGCGGTGGTGGTGGGAGTGGAAGCGGTGGAGGTAG
CGCCGGTAGAAGGCGACAAGACGGGGATGACCCCTTCCGAGAACACTCAC
GCTCATCTACTCCTGGCGCGTGTTCAAGTGGCGATGCAAGTCACGTGACT
CTTGAGCGACCGCTGCCTCCTTCGTCAAAGAGGAAGATGCTACCCCAATC
CTTTGCCGTCAAAGGCGGTGGCGACATCAGATACGTATCGTGCCCGTTCG
AGAAAATTCTTCCGCTTGTCCGATCCCGACGTGTATTGCTTAGGGACGGG
AAGGCGCTACTCTCGCCGGTTCAAGTTCCTGAGGCAGTGGTACAGCACTT
TGAAGGGCGTCTTAGGGAGGGAATCGCCGTCGCGGAGCGCGGCTTGCCCG
GGGTCGAGGCCGACGTTAGGGTGGCGGAGGTTTTGAGACAGGTCAGGAGA
GCAGTGGATTCCTTGGTAAGCGGCGGCTGGCGGCATGGCCGTGACGCAGA
CAACCGATCGACGGTCGCAATCACCCGGAAAAACATCGACCAGCTTGCCG
AGAAGAACTTCCCGCTCTGCATGCGGAGAACGCTGCGCATCCTTCGACGT
GAGCACCACCTCAAGTATCAGGCGCGGCTGCAGCTCATCAGCTTCCTTGG
GAACGCCGGGATGGAGATGCTAGGCTGCTTCTCCTCCACGGGCACGGCGA
TCGGCCCTCAGAGGTCAAGCATCACCGCGCAGACCTCGCGAGCCACTTCA
TACTGAAACTGGCGTGCTGTGGTGGAAAAGGCGGGGAAGTACAACCGGAA
ACTGAAGCCAGCACTAGGGACGACAGAAGTAGTCGGTGCGAGGAAGTTGA
CCGGAGGAGCAGCAGGCGGGAATGGTTCGTTCGCGCAGAGAGGGACTTGT
TTGAAGCCCGTCTCCACTGGCATCTCCGCCAAAACGAGGGGGGGGGCAGC
AAGAAAGGAATCGCGGCGCGAGGTACGGGAGGAACAAGTAGTGCCGATCT
TGGCACACGTGCGAGTAATGCCGACCGTTCGGAGGCCCTGAGACTGTTTT
ACAACCTGGAATGGCTGCAGCCGGTTGGGCCGGCAGCTCCGGGTTACAGC
CGCGTGGAGAAGAAGAGAGAAAATGGGCAGGAACGCCCTTACACGAGTGA
AGGCGGTGGCGCCAACAGTGCCGATGGTAGAGGACGTGGCGGTGGTGGTG
GGAGTGGAAGCGGTGGAGGTAGCGCCGGTAGAAGGCGACAAGACGGGGAT
GACCCCTTCCGAGAACACTCACGCTCATCTACTCCTGGCGCGTGTTCAAG
TGGCGATGCAAGTCACGTGACTCTTGAGCGACCGCTGCCTCCTTCGTCAA
AGAGGAAGATGCTACCCCAATCCTTTGCCGTCAAAGGCGGTGGCGACATC
AGATACGTATCGTGCCCGTTCGAGAAAATTCTTCCGCTTGTCCGATCCCG
ACGTGTATTGCTTAGGGACGGGAAGGCGCTACTCTCGCCGGTTCAAGTTC
CTGAGGCAGTGGTACAGCACTTTGAAGGGCGTCTTAGGGAGGGAATCGCC
GTCGCGGAGCGCGGCTTGCCCGGGGTCGAGGCCGACGTTAGGGTGGCGGA
GGTTTTGAGACAGGTCAGGAGAGCAGTGGATTCCTTGGTAAGCGGCGGCT
GGCGGCATGGCCGTGACGCAGACAACCGATCGACGGTCGCAATCACCCGG
AAAAACATCGACCAGCTTGCCGAGAAGAACTTCCCGCTCTGCATGCGGAG
AACGCTGCGCATCCTTCGACGTGAGCACCACCTCAAGTATCAGGCGCGGC
TGCAGCTCATCAGCTTCCTTGGGAACGCCGGGATGGAGGTTGATGAGATT
CTGGGTCTCTGGCGGGAGGAGTTCCCGAAAGGCATGCCGGCGGACGAGTA
TGCTCGCAAGAGAAACCAGCTAAGCGCACTCTGAGTTGATGAGATTCTGG
GTCTCTGGCGGGAGGAGTTCCCGAAAGGCATGCCGGCGGACGAGTATGCT
CGCAAGAGAAACCAGCTAAGCGCACTCTGA
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