mRNA_E-fasciculatus_F_contig14.2933.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14.2933.1
Unique NamemRNA_E-fasciculatus_F_contig14.2933.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14.2933.1 vs. uniprot
Match: A0A6H5L9F0_9PHAE (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9F0_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.160e-47
Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 2 
Query:  467 MNMTYGLRCKSSNATSVVLEWHQRATRYIVEYKPTNEQWGGQGCRRERTGMGAPSILVVSDLQPSTSYVFRLHAANEVGQFGDPGPEVIIRTEGRQS-CCVVS 772
            MNMTYGLRC+SSN+TS+VLEWH+RA RY+VEYK  +E+WGG+GCR E TG GAPSILVVS LQPST YVFRLH+AN   QFGDPGPEV+  T+GR+S CCVVS
Sbjct:    1 MNMTYGLRCQSSNSTSIVLEWHERAPRYLVEYKRASEEWGGRGCRAEHTGCGAPSILVVSQLQPSTDYVFRLHSANAECQFGDPGPEVVFSTKGRKSGCCVVS 103
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14.2933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9F0_9PHAE1.160e-4774.76Fibronectin type-III domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14contigE-fasciculatus_F_contig14:54085..56853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFibronectin type III
Ec32 orthologEc-06_000050.1
Exons3
Model size1476
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14.2933.1prot_E-fasciculatus_F_contig14.2933.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14 54551..56152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927891.8698373-UTR-E-fasciculatus_F_contig14:54084..545501622927891.8698373-UTR-E-fasciculatus_F_contig14:54084..54550Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14 54085..54550 +
1695995740.5109954-UTR-E-fasciculatus_F_contig14:54084..545501695995740.5109954-UTR-E-fasciculatus_F_contig14:54084..54550Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14 54085..54550 +
1622927891.9188116-UTR-E-fasciculatus_F_contig14:56152..568531622927891.9188116-UTR-E-fasciculatus_F_contig14:56152..56853Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14 56153..56853 +
1695995740.5495968-UTR-E-fasciculatus_F_contig14:56152..568531695995740.5495968-UTR-E-fasciculatus_F_contig14:56152..56853Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14 56153..56853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927891.8823771-CDS-E-fasciculatus_F_contig14:54550..546611622927891.8823771-CDS-E-fasciculatus_F_contig14:54550..54661Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14 54551..54661 +
1695995740.5207012-CDS-E-fasciculatus_F_contig14:54550..546611695995740.5207012-CDS-E-fasciculatus_F_contig14:54550..54661Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14 54551..54661 +
1622927891.8965483-CDS-E-fasciculatus_F_contig14:55398..555671622927891.8965483-CDS-E-fasciculatus_F_contig14:55398..55567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14 55399..55567 +
1695995740.5310316-CDS-E-fasciculatus_F_contig14:55398..555671695995740.5310316-CDS-E-fasciculatus_F_contig14:55398..55567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14 55399..55567 +
1622927891.9088802-CDS-E-fasciculatus_F_contig14:56123..561521622927891.9088802-CDS-E-fasciculatus_F_contig14:56123..56152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14 56124..56152 +
1695995740.5406659-CDS-E-fasciculatus_F_contig14:56123..561521695995740.5406659-CDS-E-fasciculatus_F_contig14:56123..56152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14 56124..56152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14.2933.1

>prot_E-fasciculatus_F_contig14.2933.1 ID=prot_E-fasciculatus_F_contig14.2933.1|Name=mRNA_E-fasciculatus_F_contig14.2933.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=103bp
MNMTYGLRCKSSNATSVVLEWHQRATRYIVEYKPTNEQWGGQGCRRERTG
MGAPSILVVSDLQPSTSYVFRLHAANEVGQFGDPGPEVIIRTEGRQSCCV
VS*
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mRNA from alignment at E-fasciculatus_F_contig14:54085..56853+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14.2933.1 ID=mRNA_E-fasciculatus_F_contig14.2933.1|Name=mRNA_E-fasciculatus_F_contig14.2933.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2769bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14:54085..56853+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAAGTGTTCGACCTTGGTTTTCCAATCGCTGTTGTCGCTGTTGTTCCTC
TCCCCCTACAGCAGTAGACTACAGCAGTACCACCAAGAAGCGAGACGGTG
AGATACAATGTACTGTAGATGTATTGTACATTGTACATACATTGCATGGG
AGTCTCTGATTTTACTTATGTATTACGCAACACTAGAATGGAGATTGTGC
CATCTCTCCTTCTAGAATAGTCTACTTCTTCACCGTGTGGGTGACGTGTC
CGCTATTACCTCCATGCTATTCCCTCCAGCAGGAACAATCAAGCAACCTA
TCTACGGGTGGGTGCCTGGCGCTGCTGACGTCGTCAAGGAGAAAATCTTC
AATTTGCAATCTTCAATTTGCCCGCCGGAGCAAATATTAACATTACATCT
CCGTCACCGCGTTGTGTGGACGTGCACCATCTTTCGTGCACTGCTGTGCC
CTTGGAGTCTTGGCACATGAACATGACCTACGGGCTCAGGTGCAAATCGT
CCAACGCTACATCAGTGGTGCTTGAATGGCATCAGAGAGCGACACGGTAC
ATTGTTGAGTACAAGCCAACGAACGAGGTGGGCGGCAGTCAAGGAAGAAG
AGCGTTCGTTCATCAATAGTCTAAGCAGCATGTCTATGTAAAGTATCTAA
AGACCTTCTTAAGAAGCATTTCCGCAACGGTTGTCTACAATAGGCGGACA
CAGGCGGGCAAGCGGGAACGACGGCAAATCCGTGTCAACAAGTAGAAGGT
GGTTTCACGTGTTCCGGCCGTAGTTACTCTTGGCGGAGGCGGTGTAACCA
ACGTGTGCCGGTTGACAGTACAATGATTTATCGGCGGTGTGTCTATGCTC
TTCGTTTTGCCGGGGAACCGCTTCGGTGGATGTGGTGCGAAAAAAAATAC
CATGTCAAAAAGGAAAGGTTAATATTTATTGCCGGTTCACCGGGACCGCC
CGCCAGAATAGGGTTAGGGTTGGAGTTGTTCAATTTATCGTCGGGAAAGG
GAAATTGCCGACGCCCATGGTTATGGTTTTCACGTCTTACAATAGCTTTT
AGCAGGGTTAGGGTTAGGGTCAGGTGTTCATTTTGCAGGGCCGTGTGCAA
TCTTCCAGAGCAGTTGTATACACTGGTGATGGCGTGCAACATTCGTTCAT
GGCAGCACCGAGCTCCTCTGTAGTACAAGTACTCCACGACATACTCAAGA
GTCTTAGCCGTGGCGTACAGTGTACTCCAGTAGTACCGTGTTTCACCCCA
GTCGTCCACTATTTTAATGTTATCGCCACCGTTCGCCGTTTTGGTGTTTA
TTTCTCAACGCCAGCAATGGGGAGGGCAAGGTTGTCGGAGAGAACGCACC
GGCATGGGCGCGCCGAGCATTTTGGTGGTCAGCGATCTGCAGCCTTCTAC
GTCCTACGTCTTCCGGCTGCACGCCGCAAACGAAGTTGGCCAGTTCGGCG
ACCCTGGTCCAGAAGTTATAATTCGTACAGAGGGTGAGCAATAGAAGATA
AATGCCCCCCTTCTCCTTCTCTTGTTCTCTCTGCACACGCTTCTACGAAG
ACTTTATCGTTTGTCTTGTCTCCGCACCTTGGCTTCTTGATGCTTCATGT
GGGTTTGCATCACCATGTGCACCATTGGTACAACTGCTGTGTCTGGCCAT
TGATGTGTGTCCTCGTGGGATGTACAACTGCTGATGGCCACCTTTGAATC
GTGCTTTGTTTGTAGACGACGAGCCTGCAACAATTCAAAATGCGGGGGAT
CACTCGCTATCTTAGCCATAGCGCAAGCCCGCCCGTCACCCTGCCTGCAA
GCAGGGAGAATCGCCACCGTATCTAACCCTAAACCCTAACCCTAACCCTA
ACCCTACCCTAGCTGTAGACTACAACAGACGTGTACGTACATATACCACC
ATTTTGCCTGACTGGCGGGACAGCTATATTTGTTGGTATTTTTTCGACGA
GATGGGCCTACATGTACATACCGCGATATGGACCGAAACCTCTCCCGAAC
GACATCTCATTTCCTGAGCGCTTGCCCACTCGCCGGCAGGAAGACAAAGT
TGCTGCGTGGTGTCTTGACGCCATCGGACATCGGGGGTCTCAAGACCGCC
GACGTCCGAAAGAGCGAAGGAGGAGAAAGAGAAGGGGTGCGACGCGTACA
TCAACCCTTGTCACTTCTGGATTCCTCCAGCGACACACTAAGACTAAGGT
GTTGTGCGCGTTTCGTTTTCAGGCAATTCAGGCAATCGGAGCGCGCTCCT
ATCGGGTTGAGAGTTGAGAACGGCGCGAGGCAGGTATACTATTAATTCAC
ATAGGTGACCCTGCTTTAACGGTGTAATGTAGGAAATGGGTAGTGCATAC
GTCTCGTCAAGGATCGATTCAAAGCAAAAAGGTGCCGTGTTATGCTGTTT
CCGGTTAACGTTGCCCTTTGGTCAATTTGCATTCTTGATATTTTTCCCAG
CGTATGTACGTGTGCTATCGTAGTGTGCCTGTGGCCGTTGATCCATCGAG
AAGAAAAACTACTGCCTGTACCTCAGAACCTAGCGCTCCTGCAAATCATT
TACACCCATTCGCGTGTTGAGTTGGTACGTGTGTCTTGTCGTACAATAGA
AAGTTGGAATGTTCCGAGAACTGTCAGCACAACTTTCTGCCTGCCTTGTA
GCATAGCTTGTGGCACCTTATCGCTTATCCCCTCCTTGTCTGACATCATA
CATCCACTTGTGATCTGGCACTTTGGCAGGTTCTTTTAGCAGAGCGGGTC
CGTTGTGCTGGAGTGGGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14:54085..56853+

>mRNA_E-fasciculatus_F_contig14.2933.1 ID=mRNA_E-fasciculatus_F_contig14.2933.1|Name=mRNA_E-fasciculatus_F_contig14.2933.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14:54085..56853+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACATGACCTACGGGCTCAGGTGCAAATCGTCCAACGCTACATCAGT
GGTGCTTGAATGGCATCAGAGAGCGACACGGTACATTGTTGAGTACAAGC
CAACGAACGAGATGAACATGACCTACGGGCTCAGGTGCAAATCGTCCAAC
GCTACATCAGTGGTGCTTGAATGGCATCAGAGAGCGACACGGTACATTGT
TGAGTACAAGCCAACGAACGAGCAATGGGGAGGGCAAGGTTGTCGGAGAG
AACGCACCGGCATGGGCGCGCCGAGCATTTTGGTGGTCAGCGATCTGCAG
CCTTCTACGTCCTACGTCTTCCGGCTGCACGCCGCAAACGAAGTTGGCCA
GTTCGGCGACCCTGGTCCAGAAGTTATAATTCGTACAGAGGCAATGGGGA
GGGCAAGGTTGTCGGAGAGAACGCACCGGCATGGGCGCGCCGAGCATTTT
GGTGGTCAGCGATCTGCAGCCTTCTACGTCCTACGTCTTCCGGCTGCACG
CCGCAAACGAAGTTGGCCAGTTCGGCGACCCTGGTCCAGAAGTTATAATT
CGTACAGAGGGAAGACAAAGTTGCTGCGTGGTGTCTTGAGAAGACAAAGT
TGCTGCGTGGTGTCTTGA
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