mRNA_E-fasciculatus_F_contig1399.2919.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1399.2919.1
Unique NamemRNA_E-fasciculatus_F_contig1399.2919.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1399.2919.1 vs. uniprot
Match: A0A6H5JEP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEP0_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.060e-49
Identity = 89/101 (88.12%), Postives = 94/101 (93.07%), Query Frame = 1 
Query:  310 MEKNKKRRAAAPLKALVANLFLVINASTNLLHVAHASTSLPSSSSEACVDETAACYDSALCWDCVAQFAEDGADSCGERYPAMTNSGASDCDVASALFCCS 612
            ME+N KRRAAAPLKA VA++FLVINAST LLHV H STSLPSSSSEACV+E AACYDSALCWDCVAQFAEDG DSCGERYPAM+NSGASDCDVASALFCCS
Sbjct:    1 MEENNKRRAAAPLKARVASIFLVINASTILLHVGHGSTSLPSSSSEACVEEAAACYDSALCWDCVAQFAEDGVDSCGERYPAMSNSGASDCDVASALFCCS 101
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BLAST of mRNA_E-fasciculatus_F_contig1399.2919.1 vs. uniprot
Match: A0A6H5L2W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.070e-16
Identity = 52/96 (54.17%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:  325 KRRAAAPLKALVANLFLVINASTNLLHVAHASTSLPSSSSEACVDETAACYDSALCWDCVAQFAEDGADSCGERYPAMTNSGASDCDVASALFCCS 612
            K   A PL+  +  L LV  A T   H+A ASTSLPSSS E C DETAACY+S LCWDCVAQF ED ++ C +RYP +       C+ A+AL+CCS
Sbjct:   45 KNTRATPLRFALPLLLLV--ADTLRPHLASASTSLPSSS-ELCPDETAACYESTLCWDCVAQF-EDSSEYCEDRYPVLAAEDDDGCEAATALYCCS 136
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BLAST of mRNA_E-fasciculatus_F_contig1399.2919.1 vs. uniprot
Match: D8LS79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS79_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.960e-16
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:  325 KRRAAAPLKALVANLFLVINASTNLLHVAHASTSLPSSSSEACVDETAACYDSALCWDCVAQFAEDGADSCGERYPAMTNSGASDCDVASALFCCS 612
            K+  A PL+  +  L LV +A     H+A AST+LPSSS E C DETAACY+S LCWDCVAQF ED ++ C +R+P +       C+ ASAL+CCS
Sbjct:   15 KKARATPLRFALPLLLLVADALRP--HLASASTTLPSSS-ELCPDETAACYESTLCWDCVAQF-EDSSEYCEDRFPVLAAEDDDGCEAASALYCCS 106
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1399.2919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JEP0_9PHAE1.060e-4988.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W4_9PHAE1.070e-1654.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS79_ECTSI2.960e-1652.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1399contigE-fasciculatus_F_contig1399:3245..5462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size612
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1399.2919.1prot_E-fasciculatus_F_contig1399.2919.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1399 3245..3547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927889.533435-CDS-E-fasciculatus_F_contig1399:3244..35471622927889.533435-CDS-E-fasciculatus_F_contig1399:3244..3547Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1399 3245..3547 -
1695995739.6776423-CDS-E-fasciculatus_F_contig1399:3244..35471695995739.6776423-CDS-E-fasciculatus_F_contig1399:3244..3547Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1399 3245..3547 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927889.9138358-UTR-E-fasciculatus_F_contig1399:3547..35971622927889.9138358-UTR-E-fasciculatus_F_contig1399:3547..3597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1399 3548..3597 -
1695995739.6886454-UTR-E-fasciculatus_F_contig1399:3547..35971695995739.6886454-UTR-E-fasciculatus_F_contig1399:3547..3597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1399 3548..3597 -
1622927890.1178198-UTR-E-fasciculatus_F_contig1399:5203..54621622927890.1178198-UTR-E-fasciculatus_F_contig1399:5203..5462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1399 5204..5462 -
1695995739.6969051-UTR-E-fasciculatus_F_contig1399:5203..54621695995739.6969051-UTR-E-fasciculatus_F_contig1399:5203..5462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1399 5204..5462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1399.2919.1

>prot_E-fasciculatus_F_contig1399.2919.1 ID=prot_E-fasciculatus_F_contig1399.2919.1|Name=mRNA_E-fasciculatus_F_contig1399.2919.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MEKNKKRRAAAPLKALVANLFLVINASTNLLHVAHASTSLPSSSSEACVD
ETAACYDSALCWDCVAQFAEDGADSCGERYPAMTNSGASDCDVASALFCC
S
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mRNA from alignment at E-fasciculatus_F_contig1399:3245..5462-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1399.2919.1 ID=mRNA_E-fasciculatus_F_contig1399.2919.1|Name=mRNA_E-fasciculatus_F_contig1399.2919.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2218bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1399:3245..5462- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTACTGCTGTGGGGCAAAAAGCGTACACTTTGCACGCGCGTGCATA
CTCTTTTTCACACGGAGGGAGTCGAACAGGACTCCAAACCCTAAAACGCG
CTATCAAACACGGGCGGAGTTTGACGGTTCGGCAGTTGGCCAGGAGAGGG
AATACAAAAGACACGAGACAGGCACGTACTGCCAAGCCGCGGTTCCCACC
CACGTCCACCCGTCACCGAGAAGCAACGACCACCACCGCCGGCACGCAGT
CTCTCAAAGGTAAGAGTCTCATTCCTCCATCGCTGCTATATACGTACCCG
TAGGCTGTTGCCCTTACCGCCAGCTCTTCGGATGGATGACAACGGGTCAT
GTGTTGGATTGATGTCAGTCACACGTCCGTCACACGTCCGGTGAACGGCA
TCTAACATCTAACGGCAGTTGGCATCTATCATCTTCACGACTGCGAAGTC
TGACGGTACGCCGACGCTACACGTAGTGCGCTCCCGGTTCTCTCTCGTCG
CATTCTCTTCTCGAATCTCTGCTGTACACATGCAGTTGTACACCTTGGAG
CACCGATGCCGTGCAACATGGCGTACGTTGCTGCTGTACAGCAGTAGGCG
CTCAATGTGCCGAATAGCTGCGAACAGTGGGGCATTGGACGGGACAACAT
TTGCTCTCCCGTGACAGGTCGTGTTTCGTGGGCATCTACTCGCAAGTACA
TACGATGCGAATTTTAAATTGTCCTCATGTAGACTAGTCTACATGCATGC
ATATGATGCGCTACATGGCATTATGTTGTGTGTTCCTTGGAGTCGTACCC
GGGCAGAGCGGCAACGAGTACCATGTTCGTGTATACGTAGACGCGGCGAT
AAAATAGGTTTAGACGACTGCTACCGCGAAGCGTGTCGAGATCGAGTACG
AGACGACATCGCGAGAAGAACCCGGCAGTATCTAGAAATATTTCCGGTGG
TGAAGAAAAGAGCACATTCAGTCATTCACAGGTCTTGGCCTTCATAGTGT
TTCGTGCCGAATGCAGTGAAACGGGGGCGGTACGCAAATTGGTTGCTTCC
TCTCGAGGCTACAAAAGTAGCAGTCTAGACTGGGCCGACAATGACGTAAA
CGTACCCACCCACGCCTCACGCGTGAAGGTGAAGGATCTGGCAGAGAATG
AACAAATCCAGCACGGACCATTGCTCAACGCCCACCGGGAGTATGTGAGC
CTCCGTTGACGACTGTTTTCATCCCAGAAATGGATAGTGTGAAAACCTTT
AATATACAGGCAAGCCTCTGACGTGCAAGATCAACGTAGTACACGTTCAT
GTGGTTCTCTTCGAACGCAAGTTTCGGTGTGAGTGAAACGAAAAGGTGAA
CAGAACCAAATCTGAATGTCATTTGGATCAACGAATCAACATCCTTTAAA
TATCTATACCACGAATAGCACCATCACTCCACCTGCACCTGCATGCTCAG
CCTCTTATACAAATAAAAGGTGGGTGGGGCACGGAAGTTTGAACAGCAGA
CGGCATGGTGGAGATTGTTTCGCGTTGTCTGCATACAGCAGTAGCCCGCA
CCCATATTTTTCGGAAGTTCGTACGTTGCGCGTCGCGAGTACTGGACACT
AAGAACAAGATATTTAGACTAGGCCGAATCTCTCGGAACGAAAACAGGCG
CATCTATGTACGGCAATGCACCGCTGTCCTCGCCAGTGCGTGGTCGAAGT
GCCCCACGTGCAACAGACACAAAAGCTTGTAGCACAAATTGCGAACCACC
AGTTCGTGCTGCGTCCATGCAAACGCACGAGAGTCTTGGCGATGAACTCT
TCGTTTCACGCCGTAACACTGATCACCCAACATGCTCCGTCGTTCGGGAA
ACGTTCCGTCTTCAGGCGCGCCTACCGAAGACGATTCCTCGAGGAATCCT
TGAGAAACCCTCGTCATGGAAAAAAACAAGAAGCGCAGGGCCGCTGCTCC
GCTGAAGGCACTGGTGGCAAACCTCTTCCTCGTCATCAACGCCTCTACGA
ACCTTCTCCATGTCGCGCATGCGTCAACCAGCCTCCCGTCCTCTTCGAGC
GAGGCCTGCGTCGACGAGACCGCCGCTTGCTACGACTCGGCCTTGTGCTG
GGACTGCGTCGCGCAGTTCGCGGAAGACGGTGCCGACAGCTGCGGGGAGC
GTTACCCCGCCATGACCAACTCCGGCGCCAGTGACTGCGACGTCGCGTCC
GCCCTGTTCTGCTGCAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1399:3245..5462-

>mRNA_E-fasciculatus_F_contig1399.2919.1 ID=mRNA_E-fasciculatus_F_contig1399.2919.1|Name=mRNA_E-fasciculatus_F_contig1399.2919.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1399:3245..5462- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAAAAAACAAGAAGCGCAGGGCCGCTGCTCCGCTGAAGGCACTGGT
GGCAAACCTCTTCCTCGTCATCAACGCCTCTACGAACCTTCTCCATGTCG
CGCATGCGTCAACCAGCCTCCCGTCCTCTTCGAGCGAGGCCTGCGTCGAC
GAGACCGCCGCTTGCTACGACTCGGCCTTGTGCTGGGACTGCGTCGCGCA
GTTCGCGGAAGACGGTGCCGACAGCTGCGGGGAGCGTTACCCCGCCATGA
CCAACTCCGGCGCCAGTGACTGCGACGTCGCGTCCGCCCTGTTCTGCTGC
AGCATGGAAAAAAACAAGAAGCGCAGGGCCGCTGCTCCGCTGAAGGCACT
GGTGGCAAACCTCTTCCTCGTCATCAACGCCTCTACGAACCTTCTCCATG
TCGCGCATGCGTCAACCAGCCTCCCGTCCTCTTCGAGCGAGGCCTGCGTC
GACGAGACCGCCGCTTGCTACGACTCGGCCTTGTGCTGGGACTGCGTCGC
GCAGTTCGCGGAAGACGGTGCCGACAGCTGCGGGGAGCGTTACCCCGCCA
TGACCAACTCCGGCGCCAGTGACTGCGACGTCGCGTCCGCCCTGTTCTGC
TGCAGC
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