mRNA_E-fasciculatus_F_contig13855.2839.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13855.2839.1
Unique NamemRNA_E-fasciculatus_F_contig13855.2839.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13855.2839.1 vs. uniprot
Match: A0A6H5K2M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M0_9PHAE)

HSP 1 Score: 455 bits (1171), Expect = 5.990e-147
Identity = 240/252 (95.24%), Postives = 244/252 (96.83%), Query Frame = 1 
Query:    7 SDRWG-MGGSEVWEAGGYMDDSHSETTDTGSAFSYLESISIGQSVAPGDGGSGAFEAFTGPVYGLVAALLEQDMARPARDKRGHRFRELFYLSNGNSFQAAVLEDALDAVQDSPMLSTEGVQSSRPASRAGGGGAAASLDARGEESVQRLESLRELLVAALHHHPDLPLGLCVKGVHTINLLGYHGSHEARSRMKSVGLLRARDDLIRRCLFHPVAAAWEIVSALSQVEDALETLVSQHGEKSGGEAETVAA 759
            SDRWG +GGSEVWE GGYMDDSHSETTDTGSAFSYLESIS+GQSV P DGG+GA EAFTGPVYGLVAALLEQDMARPAR KRGHRFRELFYLSNG SFQAAVLEDALDAVQDSPMLSTEGVQSSRPASRAGGGG AASLDARGEESVQRLESLRELLVAALHHHPDLPLGLCVKGVHTINLLGYHGSHEARSRMKSVGLLRARDDL+RRCLFHPVAAAWEIVSALSQVEDALETLVSQHGEKSGGEAETVAA
Sbjct:  680 SDRWGGVGGSEVWEPGGYMDDSHSETTDTGSAFSYLESISMGQSVVP-DGGNGALEAFTGPVYGLVAALLEQDMARPARHKRGHRFRELFYLSNGKSFQAAVLEDALDAVQDSPMLSTEGVQSSRPASRAGGGGPAASLDARGEESVQRLESLRELLVAALHHHPDLPLGLCVKGVHTINLLGYHGSHEARSRMKSVGLLRARDDLVRRCLFHPVAAAWEIVSALSQVEDALETLVSQHGEKSGGEAETVAA 930
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BLAST of mRNA_E-fasciculatus_F_contig13855.2839.1 vs. uniprot
Match: D8LQH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH1_ECTSI)

HSP 1 Score: 445 bits (1144), Expect = 2.600e-140
Identity = 235/251 (93.63%), Postives = 239/251 (95.22%), Query Frame = 1 
Query:    7 SDRWGMGGSEVWEAGGYMDDSHSETTDTGSAFSYLESISIGQSVAPGDGGSGAFEAFTGPVYGLVAALLEQDMARPARDKRGHRFRELFYLSNGNSFQAAVLEDALDAVQDSPMLSTEGVQSSRPASRAGGGGAAASLDARGEESVQRLESLRELLVAALHHHPDLPLGLCVKGVHTINLLGYHGSHEARSRMKSVGLLRARDDLIRRCLFHPVAAAWEIVSALSQVEDALETLVSQHGEKSGGEAETVAA 759
            SDRWGM       AGGYMDDSHSETTDTGSAFSYLESIS+GQSV P DGGSGA EAFTGPVYGLVAALLEQDMARPAR KRGHRFRELF+LSNG SFQAAVLEDALDAVQDSPMLSTEGVQSSRPASRAGGGGAAASLDARGEESVQRLE+LRELLVAALHHHPDLPLGLCVKGVHTINLLGYHGSHEARSRMKSVGLLRARDDLIRRCLFHPVAAAWE+VSALSQVEDALETLVSQHGEKSGGEAETVAA
Sbjct: 2913 SDRWGMXXXXXXXAGGYMDDSHSETTDTGSAFSYLESISMGQSVVP-DGGSGALEAFTGPVYGLVAALLEQDMARPARHKRGHRFRELFHLSNGKSFQAAVLEDALDAVQDSPMLSTEGVQSSRPASRAGGGGAAASLDARGEESVQRLENLRELLVAALHHHPDLPLGLCVKGVHTINLLGYHGSHEARSRMKSVGLLRARDDLIRRCLFHPVAAAWEVVSALSQVEDALETLVSQHGEKSGGEAETVAA 3162
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13855.2839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2M0_9PHAE5.990e-14795.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQH1_ECTSI2.600e-14093.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13855contigE-fasciculatus_F_contig13855:14..3120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score439.9
Seed ortholog evalue7.9e-121
Seed eggNOG ortholog2880.D8LQH1
EggNOG OGs2C9IK@1,2QS1U@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size761
Cds size738
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13855.2839.1prot_E-fasciculatus_F_contig13855.2839.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13855 35..3120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927879.1710005-UTR-E-fasciculatus_F_contig13855:13..341622927879.1710005-UTR-E-fasciculatus_F_contig13855:13..34Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13855 14..34 +
1695995734.8233747-UTR-E-fasciculatus_F_contig13855:13..341695995734.8233747-UTR-E-fasciculatus_F_contig13855:13..34Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13855 14..34 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927879.194437-CDS-E-fasciculatus_F_contig13855:34..891622927879.194437-CDS-E-fasciculatus_F_contig13855:34..89Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13855 35..89 +
1695995734.834289-CDS-E-fasciculatus_F_contig13855:34..891695995734.834289-CDS-E-fasciculatus_F_contig13855:34..89Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13855 35..89 +
1622927879.2107265-CDS-E-fasciculatus_F_contig13855:658..8821622927879.2107265-CDS-E-fasciculatus_F_contig13855:658..882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13855 659..882 +
1695995734.8446639-CDS-E-fasciculatus_F_contig13855:658..8821695995734.8446639-CDS-E-fasciculatus_F_contig13855:658..882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13855 659..882 +
1622927879.224818-CDS-E-fasciculatus_F_contig13855:1545..17711622927879.224818-CDS-E-fasciculatus_F_contig13855:1545..1771Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13855 1546..1771 +
1695995734.8547134-CDS-E-fasciculatus_F_contig13855:1545..17711695995734.8547134-CDS-E-fasciculatus_F_contig13855:1545..1771Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13855 1546..1771 +
1622927879.2370183-CDS-E-fasciculatus_F_contig13855:2213..23711622927879.2370183-CDS-E-fasciculatus_F_contig13855:2213..2371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13855 2214..2371 +
1695995734.8639295-CDS-E-fasciculatus_F_contig13855:2213..23711695995734.8639295-CDS-E-fasciculatus_F_contig13855:2213..2371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13855 2214..2371 +
1622927879.2498724-CDS-E-fasciculatus_F_contig13855:3045..31201622927879.2498724-CDS-E-fasciculatus_F_contig13855:3045..3120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13855 3046..3120 +
1695995734.8729937-CDS-E-fasciculatus_F_contig13855:3045..31201695995734.8729937-CDS-E-fasciculatus_F_contig13855:3045..3120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13855 3046..3120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13855.2839.1

>prot_E-fasciculatus_F_contig13855.2839.1 ID=prot_E-fasciculatus_F_contig13855.2839.1|Name=mRNA_E-fasciculatus_F_contig13855.2839.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=246bp
MGGSEVWEAGGYMDDSHSETTDTGSAFSYLESISIGQSVAPGDGGSGAFE
AFTGPVYGLVAALLEQDMARPARDKRGHRFRELFYLSNGNSFQAAVLEDA
LDAVQDSPMLSTEGVQSSRPASRAGGGGAAASLDARGEESVQRLESLREL
LVAALHHHPDLPLGLCVKGVHTINLLGYHGSHEARSRMKSVGLLRARDDL
IRRCLFHPVAAAWEIVSALSQVEDALETLVSQHGEKSGGEAETVAA
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mRNA from alignment at E-fasciculatus_F_contig13855:14..3120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13855.2839.1 ID=mRNA_E-fasciculatus_F_contig13855.2839.1|Name=mRNA_E-fasciculatus_F_contig13855.2839.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3107bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13855:14..3120+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGGAGCGACCGGTGGGGGATGGGAGGTTCCGAGGTGTGGGAAGCGGG
GGGGTATATGGACGACTCGCACTCAGGTCCGTGCGCTGGGAAGGAAGGAA
GGAAGGAAGGGTGTTGTTCTTCAGTGTGGGTCGTTCTGGTGTATTATCTC
GTGGCAGGTTTTGGTGCATCCGAGTAGTAGATGGGAATTGGGCTAGACGG
AGTTCGTCGTTTAGGCGCGTGTTTTGCTGGTTGGGGGGGGGGGTGCTTGT
GGTGTGGTCTGTCCCACGCGCTTTGTTGAGCGACGGCTGTAGATCGGTAT
GTTGTTCGTGCCGGGTGCTGCAGCCGTGTACGCTCTCTTCGACGGATGGA
CAACCACCCATGGCTTCTCCCCGTTCGCCGTAACACCGAGAAAGGGATAT
GTCGCCCCCCACGCCCCCGCCCTCTTCCCCCCAGTACACTTGTTGAGTCC
CAGCAAGGCGGTTAACCTCAGGTACATTGTCCAACCTCCCGCCCACCCAA
TGCTTGTTCGATTTGAATGAACCTGATTTCAAATAAACTGTTGTTGAATC
TCACCAAGTACATTGTTCCATCTCGCGCAGCAGCATGCTGACAATTTCTT
CTTTGTTTTTATTCTTATTTTCTGCGGGACCGTTAAAAAAAACAGAGACG
ACGGACACCGGCAGCGCGTTCAGCTACTTGGAGTCGATTTCGATCGGCCA
GTCCGTGGCGCCCGGTGACGGTGGCAGCGGCGCTTTTGAGGCCTTCACCG
GCCCCGTCTACGGCCTCGTGGCCGCCTTGCTCGAGCAGGACATGGCGAGA
CCCGCACGAGACAAGCGAGGCCACCGTTTCCGCGAGCTGTTCTACCTCTC
GAACGGCAACAGCTTCCAGGTGACCGCCGCCCGCAGACACGAAACAACAA
GGCCGCAGCAACACTTGCCACCACGTATGCCTATATATTTTCCGATCTGT
TGGCCTTTTTGCACCCTTGTTTCGCATATTATGGTATTATAGTATGATTC
GCTCTGTTCTCGCGCAAATGCTATGCTGCCTTGTGAGGACCGTTGTCTGT
TCCGATCGGCCTTTCTGCTGCCTTTATTGTGCCTTGTTTTATGTTTTACG
ATCCGGAGTCCTACCTGGCGAATGATGCCTTGATGCCCTGTCGGGATCTC
AACGCGCAGTGGGCCGTGTCTCGCGTGTGGCCAACCCTGCTAGCGATCCT
TCAAGCACCCCTCAACTCACTCCTGTAGCCGGAGCGCGGATCATGCGCCG
ACACTCTACCCGTATCCGTCGTTCACCCCGATTCCGGACGCGTACATCTC
CCTCCTCGTTCATGATACCGCGATTCTCCCCGATACGCTCGTGCTGCTGC
ACCCCTGTTGCCACTTACTTCTTGGGTGCCGCGTTAACCTTGTGAACTTC
GTTTTCGCTTCCATTTTTCTTTGCCGTGCTGCTGCCGTAATTGACCCCAT
CGCTCTGACCAACACCCTCGGCAACGACGACTGCGGCGCTGTGTGTCTGT
CTTTGCCTCGAAACCAATCGCGCTCGCAATAGGCGGCGGTGCTAGAAGAC
GCCCTCGATGCCGTGCAAGACAGCCCCATGCTGTCTACGGAAGGCGTTCA
AAGCTCACGCCCAGCGTCGAGGGCAGGAGGGGGAGGAGCGGCGGCCTCTT
TGGATGCAAGGGGCGAAGAGAGCGTGCAGAGACTCGAGAGCTTGAGAGAG
CTGCTTGTCGCTGCTTTGCATCACCATCCCGATCTTCCCCTGGGGCTTTG
CGTCAAGGGTGCGTTGCCTCGGATTCGTCCTGCTCCTTAAGTCAAGAGCG
TTTCTTTTTGCATCCTCGTTTCCTCCAACAAGCAACGTCGTTCTAGAGAA
AGTGGTTGAACAATTTTACCGCTGTGTCTCTTGAAAAGTGATTGTCTGTG
GCTTAGGCGGGTGCCCAATGTACGTTGTATGCACGAGCGAGCATTTTTTT
CGTCATGTTGGACTCCTGCCGTGGACTGAACCAAGTGTCCAAGCGTTCAG
TATCTCGGTGATTACGTGGCCGCTAATCGGCGCTGTTTCCTGGTTGACGT
TTGTCGTAGTCACACAAAAGCTCTAGAAGGTCTCTTCGCCAACGTACATG
CACTGTGTACCAGATGCGGTCCATTCACGAGCCTCCCGTGTCCCCCTCCC
CTCTCTCACTCTCTGTACGAAACCCCTTTGAAACCAACCGCGGGTGGCAG
GCGTGCACACGATCAACCTGCTGGGGTACCACGGCTCTCACGAGGCGAGG
AGCAGGATGAAGTCGGTGGGGCTGCTCCGGGCACGAGACGACCTCATCCG
TCGCTGCCTCTTCCATCCCGTCGCCGCCGCGTGGGAGATAGTGTCGGCCT
TGTCGCAGGTGCGTGCTGCGGTAGGCCGCTTGCTCTGGATCACAAGGCCG
CCCTGACGTTCGTCCGACCCAGCAGGGTTAGGGTTGTTTCCTTGAGCTCT
GAGAACCTCATGGATGTGTCGGATGCGGGTCCTGCTCGGATCGCTTGCAT
CCTGGATCAGTCGGATCTCTCCATTTGTTTTTTGTTACTTTTTGCTAAAG
TCGGAGTGTTGAAGCAACTGCTGTGCTCGGTGGCAGAAATATGTTCTTCT
GTTATTTAGCGTTCCATGTGGGTTCTGTCTGCCATGAATCCCACAGCCGG
TGTGATTCGTGCTCTATGTAGTCCTGTATTCAGGATGCAGCCGGTAGGTG
CGGAGTTTTATATCTGTCTTGTGTCTTGTGTTAAATTACTTGCCGCTGTC
GTCGTACGTACGTTGCGCTTGATGCGGCAGCTAGGCTTGCTCCTCCATAG
TGATGGGCTGCTATGTCGGTGCTTCGCCCTTGCCGAAGTTCTTCATTAGC
ACGGAGTGTCCACGGTGCTACTGCTCTTTCAAGCAGAATGTTCTCCTACC
ATCTTGGCATGCTCTTGTTCGAGGCAGAGGACACGTGTTCTCTGTATAAC
AATACTTCAAGCAACTTTTTTGCTCTCTATTTAGCAGCCACAGCTCCTTG
ACTTGCACCCCCTCCATGTTCGGCTTGTCTAGGTGGAGGACGCTTTGGAG
ACGCTCGTGTCACAGCACGGCGAGAAGTCGGGCGGCGAGGCTGAGACTGT
TGCCGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13855:14..3120+

>mRNA_E-fasciculatus_F_contig13855.2839.1 ID=mRNA_E-fasciculatus_F_contig13855.2839.1|Name=mRNA_E-fasciculatus_F_contig13855.2839.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1476bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13855:14..3120+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGAGGTTCCGAGGTGTGGGAAGCGGGGGGGTATATGGACGACTCGCA
CTCAGATGGGAGGTTCCGAGGTGTGGGAAGCGGGGGGGTATATGGACGAC
TCGCACTCAGAGACGACGGACACCGGCAGCGCGTTCAGCTACTTGGAGTC
GATTTCGATCGGCCAGTCCGTGGCGCCCGGTGACGGTGGCAGCGGCGCTT
TTGAGGCCTTCACCGGCCCCGTCTACGGCCTCGTGGCCGCCTTGCTCGAG
CAGGACATGGCGAGACCCGCACGAGACAAGCGAGGCCACCGTTTCCGCGA
GCTGTTCTACCTCTCGAACGGCAACAGCTTCCAGAGACGACGGACACCGG
CAGCGCGTTCAGCTACTTGGAGTCGATTTCGATCGGCCAGTCCGTGGCGC
CCGGTGACGGTGGCAGCGGCGCTTTTGAGGCCTTCACCGGCCCCGTCTAC
GGCCTCGTGGCCGCCTTGCTCGAGCAGGACATGGCGAGACCCGCACGAGA
CAAGCGAGGCCACCGTTTCCGCGAGCTGTTCTACCTCTCGAACGGCAACA
GCTTCCAGGCGGCGGTGCTAGAAGACGCCCTCGATGCCGTGCAAGACAGC
CCCATGCTGTCTACGGAAGGCGTTCAAAGCTCACGCCCAGCGTCGAGGGC
AGGAGGGGGAGGAGCGGCGGCCTCTTTGGATGCAAGGGGCGAAGAGAGCG
TGCAGAGACTCGAGAGCTTGAGAGAGCTGCTTGTCGCTGCTTTGCATCAC
CATCCCGATCTTCCCCTGGGGCTTTGCGTCAAGGGCGGCGGTGCTAGAAG
ACGCCCTCGATGCCGTGCAAGACAGCCCCATGCTGTCTACGGAAGGCGTT
CAAAGCTCACGCCCAGCGTCGAGGGCAGGAGGGGGAGGAGCGGCGGCCTC
TTTGGATGCAAGGGGCGAAGAGAGCGTGCAGAGACTCGAGAGCTTGAGAG
AGCTGCTTGTCGCTGCTTTGCATCACCATCCCGATCTTCCCCTGGGGCTT
TGCGTCAAGGGCGTGCACACGATCAACCTGCTGGGGTACCACGGCTCTCA
CGAGGCGAGGAGCAGGATGAAGTCGGTGGGGCTGCTCCGGGCACGAGACG
ACCTCATCCGTCGCTGCCTCTTCCATCCCGTCGCCGCCGCGTGGGAGATA
GTGTCGGCCTTGTCGCAGGCGTGCACACGATCAACCTGCTGGGGTACCAC
GGCTCTCACGAGGCGAGGAGCAGGATGAAGTCGGTGGGGCTGCTCCGGGC
ACGAGACGACCTCATCCGTCGCTGCCTCTTCCATCCCGTCGCCGCCGCGT
GGGAGATAGTGTCGGCCTTGTCGCAGGTGGAGGACGCTTTGGAGACGCTC
GTGTCACAGCACGGCGAGAAGTCGGGCGGCGAGGCTGAGACTGTTGCCGC
AGTGGAGGACGCTTTGGAGACGCTCGTGTCACAGCACGGCGAGAAGTCGG
GCGGCGAGGCTGAGACTGTTGCCGCA
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