mRNA_E-fasciculatus_F_contig1385.2836.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1385.2836.1
Unique NamemRNA_E-fasciculatus_F_contig1385.2836.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1385.2836.1 vs. uniprot
Match: A0A6H5KXY4_9PHAE (YjgF_endoribonc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXY4_9PHAE)

HSP 1 Score: 347 bits (891), Expect = 1.380e-118
Identity = 180/187 (96.26%), Postives = 183/187 (97.86%), Query Frame = 1 
Query:   10 MLRRVTSLVGRAAVRPRSVHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQDLSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDDSSSKKGDDDWTVLKRP 570
            MLRRV+SLVGRAAVRPR VHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQ+L+EEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDD   KKGDDDWTVLKRP
Sbjct:    1 MLRRVSSLVGRAAVRPRRVHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQELNEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDDGG-KKGDDDWTVLKRP 186
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1385.2836.1 vs. uniprot
Match: A0A4D9CNR9_9STRA (YjgF_endoribonc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNR9_9STRA)

HSP 1 Score: 214 bits (545), Expect = 4.020e-66
Identity = 100/153 (65.36%), Postives = 128/153 (83.66%), Query Frame = 1 
Query:   64 VHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQDLSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDD 522
            +HTEAKL E+G++LP+P  P GNF M V++G ++Y SGHLPT   G+  TGKVG ++S EEAQ AA+ +A+ L++S+KK++GDLDRV RIVKLVGFVNC DGF+ QP VVNGASD F +VFG++GVH+RSAVGTNALP+N+PVEIEAIVE +D
Sbjct:   32 IHTEAKLTEMGLKLPSPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 184
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1385.2836.1 vs. uniprot
Match: W7TB75_9STRA (Endoribonuclease l-psp n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB75_9STRA)

HSP 1 Score: 213 bits (543), Expect = 4.170e-65
Identity = 100/153 (65.36%), Postives = 127/153 (83.01%), Query Frame = 1 
Query:   64 VHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQDLSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDD 522
            +HTEAKL E+G++LP P  P GNF M V++G ++Y SGHLPT   G+  TGKVG ++S EEAQ AA+ +A+ L++S+KK++GDLDRV RIVKLVGFVNC DGF+ QP VVNGASD F +VFG++GVH+RSAVGTNALP+N+PVEIEAIVE +D
Sbjct:   83 IHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1385.2836.1 vs. uniprot
Match: A0A5A8CF06_CAFRO (YjgF_endoribonc domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8CF06_CAFRO)

HSP 1 Score: 206 bits (524), Expect = 5.070e-63
Identity = 98/168 (58.33%), Postives = 127/168 (75.60%), Query Frame = 1 
Query:   19 RVTSLVGRAAVRPRSVHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQDLSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDD 522
            R TS     A+  R VHTEAK++E+G++LPTP  P  N++M  R GNLL+T+GHLP   +G+   GKVG+D + EEA  AAR+ A+ ++ ++K ++GDLD+V R+VKL GFVNC D F+ QPKV+NGASD   EV GERGVH RSAVGTNALPMNVPVE+EAI+E D+
Sbjct:   12 RATSAPAVRALAARGVHTEAKIEEMGLKLPTPPTPAANYIMCHRVGNLLFTAGHLPMQEDGQLFNGKVGKDFTTEEAYTAARQCALAILGTVKAEIGDLDKVKRVVKLTGFVNCVDAFSAQPKVLNGASDFMGEVLGERGVHVRSAVGTNALPMNVPVEVEAIIEIDE 179
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1385.2836.1 vs. uniprot
Match: A0A4D9CNR0_9STRA (YjgF_endoribonc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNR0_9STRA)

HSP 1 Score: 201 bits (510), Expect = 2.920e-61
Identity = 99/153 (64.71%), Postives = 122/153 (79.74%), Query Frame = 1 
Query:   64 VHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQDLSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDD 522
            V  EA+L +LGI+LP   AP GN+ + VRTGNLL+ +GH+P    G   TGKVG D S EE QEAA+ +AI L+A++K +LGDLD+V RIVKLVGFVNC DGF+ QP VVNGASD F +VFG++GVH+RSAVGTNALP+N+PVEIEAIVE +D
Sbjct:    2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKSGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 154
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1385.2836.1 vs. uniprot
Match: A0A2R5GI79_9STRA (Protein TCP17 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI79_9STRA)

HSP 1 Score: 201 bits (510), Expect = 7.480e-61
Identity = 98/166 (59.04%), Postives = 129/166 (77.71%), Query Frame = 1 
Query:   25 TSLVGRAAVRPRSVHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQDLSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDD 522
            T  +  A V  R VHTEAKL++LG  LP   +P G++ + VR+GN ++T+GHLP    G+   GKVG DLS EEA +AA+  A+ ++A++K +LGDLDRV R+VK+VGFVNC DGFA QP+V+NGASDLFAEV GERG+H+RSAVGTN+LP+N+PVE+EAIVE  +
Sbjct:   18 TQALQAAPVLMRGVHTEAKLEKLGYTLPQVASPKGSYQLCVRSGNQMFTAGHLPQPANGDLLVGKVGVDLSVEEANKAAQYCALSILATLKAELGDLDRVARVVKVVGFVNCADGFAQQPQVINGASDLFAEVLGERGLHARSAVGTNSLPLNIPVEVEAIVEISE 183
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1385.2836.1 vs. uniprot
Match: A0A024UKU1_9STRA (YjgF_endoribonc domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UKU1_9STRA)

HSP 1 Score: 198 bits (503), Expect = 5.240e-60
Identity = 97/165 (58.79%), Postives = 122/165 (73.94%), Query Frame = 1 
Query:   28 SLVGRAAVRPRSVHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQDLSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDD 522
            SL+  AA   R VHTEA++KELG  LP    P GN+  +VR GNL++T+GHLP    GE   GKVG DL+ EE  EAA  VA+ L+A++K++LGDLDRV RIVK+VGFVNC DGF  QP V+NG SD   ++FG+RG+H+RSAVGTNALP+ +PVE+E IVE  D
Sbjct:    4 SLLKPAAAAARFVHTEARIKELGYTLPAVATPKGNYRNSVRMGNLIFTAGHLPQPAGGELIKGKVGVDLTPEEGYEAAHHVALALVATLKQELGDLDRVKRIVKVVGFVNCVDGFTAQPSVINGTSDTLVKIFGDRGIHARSAVGTNALPLGIPVEVEIIVEIQD 168
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1385.2836.1 vs. uniprot
Match: A0A485KSR4_9STRA (Aste57867_10922 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSR4_9STRA)

HSP 1 Score: 198 bits (503), Expect = 5.960e-60
Identity = 99/171 (57.89%), Postives = 123/171 (71.93%), Query Frame = 1 
Query:   10 MLRRVTSLVGRAAVRPRSVHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQDLSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDD 522
            M R   +    AA   R VHTE ++KELG  LP    P GN+   VR+GNLL+T+GHLP    GE   GKVG+DL+ E+  EAAR VA+ + A++K++LGDLDRV RIVK+VGFVNC DGF  QP V+NG SD   E+FGERGVH+RSAVGTNALP+ +PVE+E IVE +D
Sbjct:    1 MFRSAVAAFKPAAAAVRRVHTENRIKELGYTLPAVATPKGNYRNVVRSGNLLFTAGHLPQPAGGELIKGKVGEDLTAEQGYEAARHVALAVCATLKQELGDLDRVKRIVKVVGFVNCVDGFTAQPSVINGFSDTVGEIFGERGVHARSAVGTNALPLGIPVEVECIVEVED 171
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1385.2836.1 vs. uniprot
Match: A0A3R7HFK6_9STRA (YjgF_endoribonc domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HFK6_9STRA)

HSP 1 Score: 197 bits (502), Expect = 8.430e-60
Identity = 94/155 (60.65%), Postives = 124/155 (80.00%), Query Frame = 1 
Query:   58 RSVHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQDLSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDD 522
            R+VH E KL+ELG  LP   +P GN+  +VR+GN +Y +GHLP    GE  TGKVG+DL+ EEA +AA  V++ ++A++K+++GDLD++ R+VKLVGFVNC DGFAGQP V+NGASD F +VFG +GVH+RSAVGTNALP+NV VEIEA+VE +D
Sbjct:   18 RNVHIERKLEELGYVLPEVASPKGNYRTSVRSGNTIYMAGHLPQPAGGELITGKVGKDLTPEEAYDAAHYVSLSIMATLKQEVGDLDKIKRVVKLVGFVNCVDGFAGQPAVINGASDTFGKVFGNKGVHARSAVGTNALPLNVAVEIEAVVEIED 172
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1385.2836.1 vs. uniprot
Match: K3WJH4_GLOUD (YjgF_endoribonc domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJH4_GLOUD)

HSP 1 Score: 194 bits (492), Expect = 2.030e-58
Identity = 94/150 (62.67%), Postives = 118/150 (78.67%), Query Frame = 1 
Query:   79 KLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQDLSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDDSS 528
            +L ELG  LPTP +P GN+V  VRTGNL++T+GH+  +  GE  TGKVG+DL+ EE   AA +V + L+A++KK+LGDLD + RIVKL GFVNC DGFAGQP V+NGASD  AE+FG +G H+RSAVGTNALP+NV VEIEAIVE + S+
Sbjct:    7 RLAELGYVLPTPTSPAGNYVNVVRTGNLIFTAGHVSQAATGELITGKVGKDLTPEEGYVAAHRVVLSLLATLKKELGDLDHIKRIVKLTGFVNCVDGFAGQPAVINGASDALAEIFGAKGKHARSAVGTNALPVNVAVEIEAIVEVEPSA 156
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1385.2836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXY4_9PHAE1.380e-11896.26YjgF_endoribonc domain-containing protein n=2 Tax=... [more]
A0A4D9CNR9_9STRA4.020e-6665.36YjgF_endoribonc domain-containing protein n=1 Tax=... [more]
W7TB75_9STRA4.170e-6565.36Endoribonuclease l-psp n=2 Tax=Nannochloropsis gad... [more]
A0A5A8CF06_CAFRO5.070e-6358.33YjgF_endoribonc domain-containing protein n=2 Tax=... [more]
A0A4D9CNR0_9STRA2.920e-6164.71YjgF_endoribonc domain-containing protein n=2 Tax=... [more]
A0A2R5GI79_9STRA7.480e-6159.04Protein TCP17 n=1 Tax=Hondaea fermentalgiana TaxID... [more]
A0A024UKU1_9STRA5.240e-6058.79YjgF_endoribonc domain-containing protein n=3 Tax=... [more]
A0A485KSR4_9STRA5.960e-6057.89Aste57867_10922 protein n=1 Tax=Aphanomyces stella... [more]
A0A3R7HFK6_9STRA8.430e-6060.65YjgF_endoribonc domain-containing protein n=3 Tax=... [more]
K3WJH4_GLOUD2.030e-5862.67YjgF_endoribonc domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1385contigE-fasciculatus_F_contig1385:7579..10615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.2
Seed ortholog evalue7.4e-95
Seed eggNOG ortholog2880.D8LRH0
EggNOG free text desc.YjgF/chorismate_mutase-like, putative endoribonuclease
EggNOG OGs2QS7E@2759,COG0251@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionputative Translation Initiation Inhibitor
Ec32 orthologEc-18_004500.1
Exons5
Model size929
Cds size564
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927878.713937-UTR-E-fasciculatus_F_contig1385:7578..75871622927878.713937-UTR-E-fasciculatus_F_contig1385:7578..7587Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1385 7579..7587 +
1695995734.6111288-UTR-E-fasciculatus_F_contig1385:7578..75871695995734.6111288-UTR-E-fasciculatus_F_contig1385:7578..7587Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1385 7579..7587 +
1622927878.7839675-UTR-E-fasciculatus_F_contig1385:10259..106151622927878.7839675-UTR-E-fasciculatus_F_contig1385:10259..10615Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1385 10260..10615 +
1695995734.668429-UTR-E-fasciculatus_F_contig1385:10259..106151695995734.668429-UTR-E-fasciculatus_F_contig1385:10259..10615Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1385 10260..10615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927878.7267883-CDS-E-fasciculatus_F_contig1385:7587..77051622927878.7267883-CDS-E-fasciculatus_F_contig1385:7587..7705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1385 7588..7705 +
1695995734.6237793-CDS-E-fasciculatus_F_contig1385:7587..77051695995734.6237793-CDS-E-fasciculatus_F_contig1385:7587..7705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1385 7588..7705 +
1622927878.7367492-CDS-E-fasciculatus_F_contig1385:7978..80701622927878.7367492-CDS-E-fasciculatus_F_contig1385:7978..8070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1385 7979..8070 +
1695995734.63268-CDS-E-fasciculatus_F_contig1385:7978..80701695995734.63268-CDS-E-fasciculatus_F_contig1385:7978..8070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1385 7979..8070 +
1622927878.7485397-CDS-E-fasciculatus_F_contig1385:8952..90311622927878.7485397-CDS-E-fasciculatus_F_contig1385:8952..9031Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1385 8953..9031 +
1695995734.6413198-CDS-E-fasciculatus_F_contig1385:8952..90311695995734.6413198-CDS-E-fasciculatus_F_contig1385:8952..9031Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1385 8953..9031 +
1622927878.7624667-CDS-E-fasciculatus_F_contig1385:9406..95281622927878.7624667-CDS-E-fasciculatus_F_contig1385:9406..9528Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1385 9407..9528 +
1695995734.6509748-CDS-E-fasciculatus_F_contig1385:9406..95281695995734.6509748-CDS-E-fasciculatus_F_contig1385:9406..9528Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1385 9407..9528 +
1622927878.772936-CDS-E-fasciculatus_F_contig1385:10106..102591622927878.772936-CDS-E-fasciculatus_F_contig1385:10106..10259Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1385 10107..10259 +
1695995734.6599252-CDS-E-fasciculatus_F_contig1385:10106..102591695995734.6599252-CDS-E-fasciculatus_F_contig1385:10106..10259Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1385 10107..10259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1385.2836.1prot_E-fasciculatus_F_contig1385.2836.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1385 7588..10259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1385.2836.1

>prot_E-fasciculatus_F_contig1385.2836.1 ID=prot_E-fasciculatus_F_contig1385.2836.1|Name=mRNA_E-fasciculatus_F_contig1385.2836.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=188bp
MLRRVTSLVGRAAVRPRSVHTEAKLKELGIELPTPKAPLGNFVMTVRTGN
LLYTSGHLPTSLEGETTTGKVGQDLSEEEAQEAARKVAIQLIASIKKDLG
DLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAV
GTNALPMNVPVEIEAIVEFDDSSSKKGDDDWTVLKRP*
back to top

mRNA from alignment at E-fasciculatus_F_contig1385:7579..10615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1385.2836.1 ID=mRNA_E-fasciculatus_F_contig1385.2836.1|Name=mRNA_E-fasciculatus_F_contig1385.2836.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3037bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1385:7579..10615+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGATCAACATGCTTCGTAGGGTGACGTCGCTGGTTGGTCGAGCTGCGGT
GCGCCCGCGTAGCGTCCACACCGAGGCCAAGCTGAAGGAGCTAGGAATCG
AGCTACCCACCCCGAAAGCGCCGCTGGGTAAGTACTCTACGACCGAGATG
TACTCCAGTCAGAGATGTGCATGTTCTCAACCAGGGCTATATACTACCTA
CGCTGCTGTGTTTTCTTACAGCAGCATCTCCAGAGTTGACCAAACTATGT
GCACAGCTAGAGGCCCACTTTGTTCTAAATCAGCACTGCACTGCACATAG
CTCTTCCCTCGCCGTGCCATGCTGCCGTGCCGTGGTGCTGTGGTTGTCTG
GATGATGCGGCGTGATTAATTTTGTTGAATTTGTTGTTGTCGCGCCACAG
GCAACTTCGTGATGACCGTGCGTACCGGGAACCTTCTCTATACCTCGGGG
CACCTTCCGACAAGCCTGGAGGGGGAGACAACCACGGGCAAGGTGCATAT
CTTCATCTTTGCTAACAGCCTCTCCACGAATGTCGCGTCGTTGCAGTTTA
TGTCTCCGCGCATTTCAACACAAATCTGTGTCGACAGTCGACAGCAGTAG
TCTAGTGTGCAGACAATCCGCCGCACCCCCTTGGCGATCGTCGATTCGGG
ATGTGTGTACTCCTGCAGGTTTTGTGGTTGGAAGAATTGGGAGACGGTGG
CAAGCGGTGTTGTGCATTGTGGGGGTCGAAGTTTGGTACACTGGTGTGTA
GTGGGTGCCATGCGGGGAGGGGAGGAGGGAGGAACACGAGGTGACGGCGG
GGCGTTCACTACCCATTCGCCCATTCGCCCATTCGCCCAACAGTCGTGTG
TGTCCCGTAGTCGGAGATCCTGTAAGCAAGCTGGTTGGCCTTGTTCAGAC
ATATTCTGTACTTGTAGTTGATGAACTACTGTATCCTCAAACCACAACAA
CATGATCCGTAGATCGGTCGCAGCATTAGGGCTAGTAGGGCTGGCTTAGA
GCGTTCGTTTCTAGCACAGATGGCCAACCTTGTCATGTCATGTCATGTCA
CGTCATGTCATGTCATGTTACCGGCAAGAGGACAAATTGCAAACTTAACG
TGTCTCTCCCTCTCTACCCCAACGAGCGACATGATGATTGTTCGTAACGC
ATGAACGGTCGTGACATGTTTTTCCTCGCTCGATCAACGTGGTCATCATT
TCTAAATTTTTCGATGCAGCGGGCAGTAACACTCCCCACTCGCCACTCCT
GAGTTTGCCTAGGTTGGGCAGTAAGGTGAGCGGTTCTACTCAAGGAATAG
TACTAGTAAAACCTTGGACCAACAGCAATGATGCTCTAGACATTCATTCT
CCAACCGTTCGGCCACCGCTGTAGGTTGGGCAAGATTTGAGCGAGGAGGA
AGCACAAGAAGCGGCACGCAAGGTCGCTATCCAGCTCATTGCATCCATCA
AGAGTGAGTGATGCCCCCCCCGAGTGTCTAGTCAGTCACAGCGGGTGTTG
TGCGAATTCAATACTGTTATACGCTACCCTGCTTTGAACTGCACCTTCTG
CAACCGAACGGTGATTGTGCTTTCGCTTTGCCTTCGTGTTCCCAACGACG
GTGCTTGGTATGCGTACAGCCTGCGGCAAAGGCGATGTGCATCTTGTGGG
ACCCAATCACTTTTTTTGTATTGACGAAATATCATCTGTCATGCCCGGAG
ATAACTTGAAGAAGGTCTCCGACGCCGATAGCTGCTATAATACCTCTGCT
GACACAGCCTTTACATCACGCACCGTTGGTTTGCTTTCTTGTTTTTCCGG
GGGGGGGGGGGGTCGGCTTCGCCGACAGAGGACTTGGGCGATTTGGACCG
GGTGACGCGGATAGTGAAGCTGGTTGGCTTCGTGAACTGTACGGACGGGT
TTGCTGGGCAGCCCAAGGTGGTTAACGGTGCCAGTGATCTCTTCGCAGAG
GTGAGTGTGGCTGCTGTGGTGAGACTTGAGGCTTGAGGCCAAAGACACCT
TTTCGGGCTGCTTTTGTTTTCCAGAGGTGCTGCGTGCGAAACACGATTTT
ATCCTTGTGCAGGTTCAGCACGCTCTTCCTTCTCATTGCAGGGATTCGTT
TTTTGTGCATCTTGTTCTTCCAGAACCAACCCCGCTTGTGTGACAACAGT
GACACGAAATCTTGAACAACAACCACAACACATCTGGCAATCGATTACAG
ACGCTGGTTGACTGCTGTCTCTTCTCCTTCTCCTTCTCCTTCCTTCCTTC
TGTATTTCAACGATGCCATCCGACCTGAGTGCTGACGCTGTCTTGGTTCC
ATCATTAACCCCTTTCCTCTGTAAAGGTGTACCAGTCACGTGGTATGCAT
GTAGGTTTTATAGAGAGAGGGGTGGCGTTTTTCAAGCGATGCACCCGTAC
GATGTACAGCGGTGCCGTTGTCATTGGAGGATAAACCATCCCATACAAAG
TGCGGTGCATCATAATTTGACCAATGGGTGACCGACCATCCATCCCATGG
CTTCTTTCTCATCGTCGTGATTGGCCAGGTGTTTGGAGAGAGGGGGGTAC
ACTCCAGGTCTGCCGTGGGCACGAACGCCCTTCCGATGAACGTCCCCGTG
GAGATTGAAGCTATCGTGGAGTTTGACGACAGCAGTTCCAAGAAGGGCGA
TGACGACTGGACGGTGCTCAAGCGCCCGTAGTTGTAGGTTTTTTCGGTGA
CATCCGGTCCCCAGACTTATATTGCTGCCTGTCCCGCTCCGCTGGTTTCG
GGCATCACTTCTGGTTGGGCAGCGCCCCCGAGTAGATGTTGGGAGAGAAG
TAAGACGTGGTCGTATGCAACTGCTCTTGTATAGATAGTCTTATGTTAGT
GGTAGGTGGCACAGACACGTGCGGCAGGCTTGATTGTTATTGGTTGCTAT
TTTTTGGTTTGCTGCAGACTGGCGGCGTGTTAAAGAGCAAGACGATTCGT
TGGTTATCATTCATTGCAACGACGCAAGTCCTGCTTTCGCAATGCCTACA
CCTCACCCCATTCGCCTTAGAGCTAATGTAGCCGTGC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1385:7579..10615+

>mRNA_E-fasciculatus_F_contig1385.2836.1 ID=mRNA_E-fasciculatus_F_contig1385.2836.1|Name=mRNA_E-fasciculatus_F_contig1385.2836.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1128bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1385:7579..10615+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTCGTAGGGTGACGTCGCTGGTTGGTCGAGCTGCGGTGCGCCCGCG
TAGCGTCCACACCGAGGCCAAGCTGAAGGAGCTAGGAATCGAGCTACCCA
CCCCGAAAGCGCCGCTGGATGCTTCGTAGGGTGACGTCGCTGGTTGGTCG
AGCTGCGGTGCGCCCGCGTAGCGTCCACACCGAGGCCAAGCTGAAGGAGC
TAGGAATCGAGCTACCCACCCCGAAAGCGCCGCTGGGCAACTTCGTGATG
ACCGTGCGTACCGGGAACCTTCTCTATACCTCGGGGCACCTTCCGACAAG
CCTGGAGGGGGAGACAACCACGGGCAAGGCAACTTCGTGATGACCGTGCG
TACCGGGAACCTTCTCTATACCTCGGGGCACCTTCCGACAAGCCTGGAGG
GGGAGACAACCACGGGCAAGGTTGGGCAAGATTTGAGCGAGGAGGAAGCA
CAAGAAGCGGCACGCAAGGTCGCTATCCAGCTCATTGCATCCATCAAGAG
TTGGGCAAGATTTGAGCGAGGAGGAAGCACAAGAAGCGGCACGCAAGGTC
GCTATCCAGCTCATTGCATCCATCAAGAAGGACTTGGGCGATTTGGACCG
GGTGACGCGGATAGTGAAGCTGGTTGGCTTCGTGAACTGTACGGACGGGT
TTGCTGGGCAGCCCAAGGTGGTTAACGGTGCCAGTGATCTCTTCGCAGAG
AGGACTTGGGCGATTTGGACCGGGTGACGCGGATAGTGAAGCTGGTTGGC
TTCGTGAACTGTACGGACGGGTTTGCTGGGCAGCCCAAGGTGGTTAACGG
TGCCAGTGATCTCTTCGCAGAGGTGTTTGGAGAGAGGGGGGTACACTCCA
GGTCTGCCGTGGGCACGAACGCCCTTCCGATGAACGTCCCCGTGGAGATT
GAAGCTATCGTGGAGTTTGACGACAGCAGTTCCAAGAAGGGCGATGACGA
CTGGACGGTGCTCAAGCGCCCGTAGGTGTTTGGAGAGAGGGGGGTACACT
CCAGGTCTGCCGTGGGCACGAACGCCCTTCCGATGAACGTCCCCGTGGAG
ATTGAAGCTATCGTGGAGTTTGACGACAGCAGTTCCAAGAAGGGCGATGA
CGACTGGACGGTGCTCAAGCGCCCGTAG
back to top