mRNA_E-fasciculatus_F_contig13847.2833.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13847.2833.1
Unique NamemRNA_E-fasciculatus_F_contig13847.2833.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13847.2833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13847contigE-fasciculatus_F_contig13847:2176..2703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size528
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927878.5277236-CDS-E-fasciculatus_F_contig13847:2175..25201622927878.5277236-CDS-E-fasciculatus_F_contig13847:2175..2520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13847 2176..2520 +
1695995734.475087-CDS-E-fasciculatus_F_contig13847:2175..25201695995734.475087-CDS-E-fasciculatus_F_contig13847:2175..2520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13847 2176..2520 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927878.541051-UTR-E-fasciculatus_F_contig13847:2520..27031622927878.541051-UTR-E-fasciculatus_F_contig13847:2520..2703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13847 2521..2703 +
1695995734.4906461-UTR-E-fasciculatus_F_contig13847:2520..27031695995734.4906461-UTR-E-fasciculatus_F_contig13847:2520..2703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13847 2521..2703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13847.2833.1prot_E-fasciculatus_F_contig13847.2833.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13847 2176..2520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13847.2833.1

>prot_E-fasciculatus_F_contig13847.2833.1 ID=prot_E-fasciculatus_F_contig13847.2833.1|Name=mRNA_E-fasciculatus_F_contig13847.2833.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp
MHSSRPVWLHAWETQALLLQLLLAGVGTNPSEQRPFERLVFHFVAEPRVS
CETQRFAAPAVAPPTRLSLLRQHHEHYIPRSTCTPAQRGSLRRSLYVRGR
QSVKSAAKLGCAPF*
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mRNA from alignment at E-fasciculatus_F_contig13847:2176..2703+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13847.2833.1 ID=mRNA_E-fasciculatus_F_contig13847.2833.1|Name=mRNA_E-fasciculatus_F_contig13847.2833.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=528bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13847:2176..2703+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATAGTTCAAGGCCTGTTTGGCTGCATGCATGGGAAACCCAGGCACT
TCTGCTACAACTGCTCCTGGCTGGTGTGGGTACAAACCCAAGCGAGCAAA
GACCGTTTGAGCGACTGGTCTTCCATTTTGTAGCCGAACCGCGTGTTTCA
TGTGAAACGCAGAGATTCGCCGCACCCGCAGTTGCACCACCCACTCGGTT
GTCGTTGCTACGCCAACACCACGAGCATTATATTCCACGCTCAACATGCA
CTCCAGCACAGAGAGGGTCACTTCGGCGCTCCCTTTACGTACGTGGACGA
CAGTCAGTCAAGAGTGCTGCCAAGCTCGGATGCGCCCCCTTCTGAAGCAG
CAGGGTGTAGACTCCTGTAACACAACACCCTGCAGACCACCACCATGTTA
CGTAACAAATTCACTAATGCATTCATGCCCCGCGTCCCCCCCCCCCGCTT
CTGCTTGCTGCACACTGGACCGGGACAGGTGCCAACACTAACCAAGCGCG
AGACTGGCGCGCAAGACTAGTGCCGCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13847:2176..2703+

>mRNA_E-fasciculatus_F_contig13847.2833.1 ID=mRNA_E-fasciculatus_F_contig13847.2833.1|Name=mRNA_E-fasciculatus_F_contig13847.2833.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13847:2176..2703+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATAGTTCAAGGCCTGTTTGGCTGCATGCATGGGAAACCCAGGCACT
TCTGCTACAACTGCTCCTGGCTGGTGTGGGTACAAACCCAAGCGAGCAAA
GACCGTTTGAGCGACTGGTCTTCCATTTTGTAGCCGAACCGCGTGTTTCA
TGTGAAACGCAGAGATTCGCCGCACCCGCAGTTGCACCACCCACTCGGTT
GTCGTTGCTACGCCAACACCACGAGCATTATATTCCACGCTCAACATGCA
CTCCAGCACAGAGAGGGTCACTTCGGCGCTCCCTTTACGTACGTGGACGA
CAGTCAGTCAAGAGTGCTGCCAAGCTCGGATGCGCCCCCTTCTGAATGCA
TAGTTCAAGGCCTGTTTGGCTGCATGCATGGGAAACCCAGGCACTTCTGC
TACAACTGCTCCTGGCTGGTGTGGGTACAAACCCAAGCGAGCAAAGACCG
TTTGAGCGACTGGTCTTCCATTTTGTAGCCGAACCGCGTGTTTCATGTGA
AACGCAGAGATTCGCCGCACCCGCAGTTGCACCACCCACTCGGTTGTCGT
TGCTACGCCAACACCACGAGCATTATATTCCACGCTCAACATGCACTCCA
GCACAGAGAGGGTCACTTCGGCGCTCCCTTTACGTACGTGGACGACAGTC
AGTCAAGAGTGCTGCCAAGCTCGGATGCGCCCCCTTCTGA
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