mRNA_E-fasciculatus_F_contig13843.2832.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13843.2832.1
Unique NamemRNA_E-fasciculatus_F_contig13843.2832.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13843.2832.1 vs. uniprot
Match: D7G7K3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K3_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 1.870e-81
Identity = 132/185 (71.35%), Postives = 146/185 (78.92%), Query Frame = 1 
Query:    1 MDDDTKAPFKSMPVKAVTGTTVVDVHDSPPCY-APXXXGPPAGVGGDIKAAHGASIAILVSHGIALLVGCYTWGFWTTVLIINLDANVTGILTSIFVLCAPSKFVYVSCAVLYLVTGLLDMILVAVWFNCEYIDADAGVLTVLAMPNIIASVCCFYGFAWALKAFHNCDKNSDLTLPEVTDLFLA 552
            MDD TK P+K MP+     TTV    DSPPC  A    GPPA + GDIKAAHGASIAIL  H IALL+GCY WG WTTVLIINLDAN+TG+ TSIFVL APSKFVYVSCA+LY VTGLLDMILVA WFN EYIDA+AG+LT+LAMPNIIAS  CF G AWALK FHN D++SD  LPE +DLFL+
Sbjct:    1 MDDITKTPYKIMPMPMKAVTTV---QDSPPCCCARPCFGPPARMEGDIKAAHGASIAILAIHAIALLIGCYVWGDWTTVLIINLDANLTGVFTSIFVLWAPSKFVYVSCAILYGVTGLLDMILVAAWFNYEYIDANAGILTLLAMPNIIASFSCFLGCAWALKVFHNRDRDSDPRLPEASDLFLS 182
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13843.2832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7K3_ECTSI1.870e-8171.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13843contigE-fasciculatus_F_contig13843:1175..3437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size555
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13843.2832.1prot_E-fasciculatus_F_contig13843.2832.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13843 1175..3437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927878.4543874-CDS-E-fasciculatus_F_contig13843:1174..13211622927878.4543874-CDS-E-fasciculatus_F_contig13843:1174..1321Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13843 1175..1321 +
1695995734.4350812-CDS-E-fasciculatus_F_contig13843:1174..13211695995734.4350812-CDS-E-fasciculatus_F_contig13843:1174..1321Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13843 1175..1321 +
1622927878.471644-CDS-E-fasciculatus_F_contig13843:2056..21261622927878.471644-CDS-E-fasciculatus_F_contig13843:2056..2126Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13843 2057..2126 +
1695995734.4457586-CDS-E-fasciculatus_F_contig13843:2056..21261695995734.4457586-CDS-E-fasciculatus_F_contig13843:2056..2126Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13843 2057..2126 +
1622927878.481522-CDS-E-fasciculatus_F_contig13843:2820..29801622927878.481522-CDS-E-fasciculatus_F_contig13843:2820..2980Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13843 2821..2980 +
1695995734.4545481-CDS-E-fasciculatus_F_contig13843:2820..29801695995734.4545481-CDS-E-fasciculatus_F_contig13843:2820..2980Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13843 2821..2980 +
1622927878.4912436-CDS-E-fasciculatus_F_contig13843:3259..34371622927878.4912436-CDS-E-fasciculatus_F_contig13843:3259..3437Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13843 3260..3437 +
1695995734.4639127-CDS-E-fasciculatus_F_contig13843:3259..34371695995734.4639127-CDS-E-fasciculatus_F_contig13843:3259..3437Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13843 3260..3437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13843.2832.1

>prot_E-fasciculatus_F_contig13843.2832.1 ID=prot_E-fasciculatus_F_contig13843.2832.1|Name=mRNA_E-fasciculatus_F_contig13843.2832.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=185bp
MDDDTKAPFKSMPVKAVTGTTVVDVHDSPPCYAPPCCGPPAGVGGDIKAA
HGASIAILVSHGIALLVGCYTWGFWTTVLIINLDANVTGILTSIFVLCAP
SKFVYVSCAVLYLVTGLLDMILVAVWFNCEYIDADAGVLTVLAMPNIIAS
VCCFYGFAWALKAFHNCDKNSDLTLPEVTDLFLA*
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mRNA from alignment at E-fasciculatus_F_contig13843:1175..3437+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13843.2832.1 ID=mRNA_E-fasciculatus_F_contig13843.2832.1|Name=mRNA_E-fasciculatus_F_contig13843.2832.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2263bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13843:1175..3437+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGACGACACCAAGGCGCCGTTCAAGAGCATGCCCGTGAAGGCTGT
GACTGGTACTACTGTTGTTGATGTACACGACTCACCGCCGTGCTACGCTC
CCCCGTGCTGCGGTCCCCCGGCCGGAGTCGGCGGGGATATTAAAGCGGTG
ACATCACGGGTACGTCATGGGAAGCACGCATGTGATATGTAGGGTGTACT
GCTGTAGTTTCAACTGCCGTTGCTGCGCGCGTATCAAGTTCGTCCATTCG
TGTACATGGTTCGTTTCATCTCTCCTGATGATCTTGTCTAACCGTGCTGT
GCACCGCAAGCCGCTGAGCCCTCTTGCCTCAAGTTCTATAGGACAAACGT
ATTCCTGCTGTCACAACCTTGTTCCTGTCCTTCTATTGACAAGACCGATG
TCTACAAGTATAGACTGTGCGCCGACACAGGCGATCTCGCCTAGAGCGGT
CATCTCACATTCAGTATAGTCTAGATGTGGAGCTCTTTCATCTTCCGTCG
ACAAACAAACCCATGATATGCGTAGACGGTCCAGCCGTCAAGCTGCGGGG
TGAACGACCTCGGGTCAAAACACGTCTGTGAATTTACGATGATGAGGCAA
TCTTGTACGTACGGTATGAGTTATACGTGCCGGCGAGGGCGAATCATCCC
AGAGGACATTCGTTCCGTGCTGTGGTCTACCTCAATACATTCACGATTGA
TTTCAAATGGCGCTCGCCGTTTCCACGATGTATGAACAAACAAACGTGTG
GTGTTTGCGTACAGCAGTAAGAGCAAGCCGAACTGACAGATTATCCTTGC
AACCTACACCACCGCCGCACGCAACAACACGCCAACTCTACCGCCACCGC
CGACACACCAACAATATTCAACCCTATCGCAGGCGCACGGGGCATCGATC
GCCATCCTCGTCAGCCACGGCATTGCTCTGCTTGTCGGTTGCTACACATG
GGGTAAGTGCAGACGCTTTATGCAGCATATGTATTTGCGTGTGTAGCGTC
ACAGCCAGCTACAGGCGGTCGTTGCGGACTAGGCCGGGGTGCCACACTCG
GCATATTTTGTTGATCGTCGCAAGTCTCAGCGAGGCGGACATTGATATGT
TGTGAATGATCCGGTCTCTCTCGTCGTCGTAGGATACACCCGCAGTCCGT
ACAAACCGGTGCATCATACATCGGAGCGGTGTTACAGATGTCACGGAATC
GAGACAGGGCGTAAAGAATCAATGATTGGCACCGGTGGCCATGTCAGGTG
CTGGCAGATACCTCATCGTGGAAAATGTTCATCAGCACAACAAGAAGTGA
AAGCTTGAAAGTACTTAGTTACAGGGCTACATCCGCCGGTTGAGAATATC
CCTGTCCATCCAACGCATGAGCAGTGCGAATCTGCACTTCACCAGCCGAA
CAGATTGCTTGCTTTGTCAAGGCTTGAGGGTGGGTGTTCTCTTCTCCTGC
GCCAAGAACGTACGAGCAGTACAAAGCGGGTTATACTTTGGAATTTTCGC
CGGGTGTGAAAGTTCGGAAGACTTCGTACCCTACTCTGTGAGTGGCCTAA
ATCCGCAACAGATTCACCAAATCATCCTCCGGGGTCCACATGGCGTCTTA
CAACGATCCCGCCTATGCTTTTTCATCCCGCTGCCCCTCGTGACAGGATT
TTGGACTACGGTGCTGATTATCAACTTGGACGCCAATGTCACTGGGATTC
TCACGAGCATCTTTGTGCTGTGCGCCCCCTCGAAGTTCGTGTACGTTTCC
TGTGCTGTTTTGTACCTCGTGACGGGACTCCTCGACATGATTCTGGTGGC
GGTATGGTGAGTTGTGCAGTGGTGAGCGCAGGAGCTGTGTGTTTTTTTCT
TTCTAACGTGCGCTCGTGCAGGAGAGCGGGGTAAATAGTATCGTCATGTG
TGCCCTCCCTTCGCTTGGCACCGCATACCTCTACTACCGTTGTTGATGAT
CTCTCGGACTGTCATGCCGTAGGGACTATACTTCAGCGTACTGGGCTTGA
GTTCATCGATGCAAGCGGGACGATAGCACCACGCCCCACACCCCCCTCCC
CCCCTTCGCCGCATACACCGACCATTCATGAGCAGGTTCAACTGCGAGTA
CATCGATGCCGACGCCGGCGTGTTGACCGTGCTGGCTATGCCAAATATCA
TCGCGAGCGTTTGCTGTTTCTACGGATTTGCATGGGCTTTGAAGGCTTTC
CACAACTGCGACAAGAATAGCGACCTCACCTTGCCTGAGGTTACAGACCT
CTTTTTGGCATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13843:1175..3437+

>mRNA_E-fasciculatus_F_contig13843.2832.1 ID=mRNA_E-fasciculatus_F_contig13843.2832.1|Name=mRNA_E-fasciculatus_F_contig13843.2832.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1110bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13843:1175..3437+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGACGACACCAAGGCGCCGTTCAAGAGCATGCCCGTGAAGGCTGT
GACTGGTACTACTGTTGTTGATGTACACGACTCACCGCCGTGCTACGCTC
CCCCGTGCTGCGGTCCCCCGGCCGGAGTCGGCGGGGATATTAAAGCGATG
GACGACGACACCAAGGCGCCGTTCAAGAGCATGCCCGTGAAGGCTGTGAC
TGGTACTACTGTTGTTGATGTACACGACTCACCGCCGTGCTACGCTCCCC
CGTGCTGCGGTCCCCCGGCCGGAGTCGGCGGGGATATTAAAGCGGCGCAC
GGGGCATCGATCGCCATCCTCGTCAGCCACGGCATTGCTCTGCTTGTCGG
TTGCTACACATGGGGCGCACGGGGCATCGATCGCCATCCTCGTCAGCCAC
GGCATTGCTCTGCTTGTCGGTTGCTACACATGGGGATTTTGGACTACGGT
GCTGATTATCAACTTGGACGCCAATGTCACTGGGATTCTCACGAGCATCT
TTGTGCTGTGCGCCCCCTCGAAGTTCGTGTACGTTTCCTGTGCTGTTTTG
TACCTCGTGACGGGACTCCTCGACATGATTCTGGTGGCGGTATGGATTTT
GGACTACGGTGCTGATTATCAACTTGGACGCCAATGTCACTGGGATTCTC
ACGAGCATCTTTGTGCTGTGCGCCCCCTCGAAGTTCGTGTACGTTTCCTG
TGCTGTTTTGTACCTCGTGACGGGACTCCTCGACATGATTCTGGTGGCGG
TATGGTTCAACTGCGAGTACATCGATGCCGACGCCGGCGTGTTGACCGTG
CTGGCTATGCCAAATATCATCGCGAGCGTTTGCTGTTTCTACGGATTTGC
ATGGGCTTTGAAGGCTTTCCACAACTGCGACAAGAATAGCGACCTCACCT
TGCCTGAGGTTACAGACCTCTTTTTGGCATGAGTTCAACTGCGAGTACAT
CGATGCCGACGCCGGCGTGTTGACCGTGCTGGCTATGCCAAATATCATCG
CGAGCGTTTGCTGTTTCTACGGATTTGCATGGGCTTTGAAGGCTTTCCAC
AACTGCGACAAGAATAGCGACCTCACCTTGCCTGAGGTTACAGACCTCTT
TTTGGCATGA
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