mRNA_E-fasciculatus_F_contig1384.2831.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1384.2831.1
Unique NamemRNA_E-fasciculatus_F_contig1384.2831.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1384.2831.1 vs. uniprot
Match: D7FT18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT18_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 1.120e-89
Identity = 136/141 (96.45%), Postives = 138/141 (97.87%), Query Frame = 1 
Query:    1 KNNSGMEFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGSVLILLRVVVGSIFPQPPSRRDLSRRQLFK 423
            +N S +EFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFG VLILLRVVVGSIFPQPPSRRDLSRRQLFK
Sbjct:   30 ENRSRIEFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSIFPQPPSRRDLSRRQLFK 170
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1384.2831.1 vs. uniprot
Match: A0A6H5L4Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y3_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 6.660e-88
Identity = 135/141 (95.74%), Postives = 136/141 (96.45%), Query Frame = 1 
Query:    1 KNNSGMEFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGSVLILLRVVVGSIFPQPPSRRDLSRRQLFK 423
            +N S  EFQFLRESLVKAEVAHLDK GELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFG VLILLRVVVGSIFPQPPSRRDLSRRQLFK
Sbjct:   78 ENRSRKEFQFLRESLVKAEVAHLDKNGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSIFPQPPSRRDLSRRQLFK 218
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1384.2831.1 vs. uniprot
Match: A0A835YLB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.460e-20
Identity = 47/118 (39.83%), Postives = 81/118 (68.64%), Query Frame = 1 
Query:   19 EFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGSVLILLRVVVGSI 372
            E  F R +L+ AE+  L + GE+V     SR+++R  A +Y + W DA+ Q     P++S GLGR+VPR++V  IM+Y++R+I ++DV + R+ +G+G++C +FG +L+L+R  VG++
Sbjct:   61 ETAFPRVNLMSAELVRLYQ-GEIVDPTSLSRQKRRTTASSYAIKWLDAQRQTHMR-PMSSRGLGRQVPRSRVQEIMKYIKREIHEVDVSQARYTSGVGLICCIFGVLLLLMRAAVGNL 176
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1384.2831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FT18_ECTSI1.120e-8996.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Y3_9PHAE6.660e-8895.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLB3_9STRA1.460e-2039.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1384contigE-fasciculatus_F_contig1384:15260..17389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002430.1
Exons2
Model size426
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1384.2831.1prot_E-fasciculatus_F_contig1384.2831.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1384 15260..17374 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927878.3856685-CDS-E-fasciculatus_F_contig1384:15259..154691622927878.3856685-CDS-E-fasciculatus_F_contig1384:15259..15469Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1384 15260..15469 -
1695995734.4070842-CDS-E-fasciculatus_F_contig1384:15259..154691695995734.4070842-CDS-E-fasciculatus_F_contig1384:15259..15469Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1384 15260..15469 -
1622927878.3977895-CDS-E-fasciculatus_F_contig1384:17173..173741622927878.3977895-CDS-E-fasciculatus_F_contig1384:17173..17374Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1384 17174..17374 -
1695995734.4167798-CDS-E-fasciculatus_F_contig1384:17173..173741695995734.4167798-CDS-E-fasciculatus_F_contig1384:17173..17374Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1384 17174..17374 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927878.410991-UTR-E-fasciculatus_F_contig1384:17374..173891622927878.410991-UTR-E-fasciculatus_F_contig1384:17374..17389Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1384 17375..17389 -
1695995734.426015-UTR-E-fasciculatus_F_contig1384:17374..173891695995734.426015-UTR-E-fasciculatus_F_contig1384:17374..17389Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1384 17375..17389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1384.2831.1

>prot_E-fasciculatus_F_contig1384.2831.1 ID=prot_E-fasciculatus_F_contig1384.2831.1|Name=mRNA_E-fasciculatus_F_contig1384.2831.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=137bp
MEFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKDAE
TQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGI
VCFVFGSVLILLRVVVGSIFPQPPSRRDLSRRQLFK*
back to top

mRNA from alignment at E-fasciculatus_F_contig1384:15260..17389-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1384.2831.1 ID=mRNA_E-fasciculatus_F_contig1384.2831.1|Name=mRNA_E-fasciculatus_F_contig1384.2831.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2130bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1384:15260..17389- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAAACAACAGTGGCATGGAGTTCCAATTTCTACGAGAGAGCCTGGTCAA
GGCAGAGGTCGCTCACCTGGACAAGAAGGGGGAGCTAGTGAGGGGAAAGC
GGGCGAGTCGGCGGCAAAAGAGGGGGATGGCCCAGACGTACACCGTCACC
TGGAAGGACGCGGAGACGCAGGACGAGACTACACTCCCCATCGCTAGCTA
CGGCCTTGGTCGAAAGGTGCGTGTGGTGGGGCATTGCCTGCGGGGGGTTG
TTTGTGTGTGTGCGTTGACGTGCAAATGATGGAGAGGATGGCGAAAAAGT
AGCGGAGTAAATTGAAGTTTAGCCTTCTTTTAGGCGTTGTGCAGAAGCAG
GGTGGCGCGATCTGCTAGGTGCAGAAGTAAAAGAATGGCATTCCGAAACT
CGGGTCAACAACGAACCCCAGCAAGAGCGATGCCCTCGCGCTGACCAACA
AATTCGAAGATGCGGTTTGGTTGGTAGGTCGACGTCATGGCATAACATGG
TGTGTAGGCATGCCTACAGAAAAAAGTAAGGCTTAAGCGCGTGTCTCAAT
GTCCACTTTCTGGGCAGGGAACAGTGAACTCGGAATTATTGTTTGATTGG
CCAGCCACACAAAATATCTCTCTGGAAACAAGAAATGACACACACGTTCC
CTGTTTGGGTAATTGCGCCGCACCATATTGTAGTAATAATGACAAGGTCA
AAAATATTAGCCAACAGACCATAGGGAACGTGGAACACGGGCTCTTCGGT
GGTAATTCAGGACGTGGTGGGATGTGTGTGTGATCACTCTCGGGCATGTG
GCTGCCGCAGGTGCTGTATGCTACCGGTTCAAGCCGTATAGGCATTGCCA
CCATCATCAGGTGTCTGGCATGAAAAAAAACGGCGGTGGATGCTCGTGTA
GCCGTTGTATAGGGGAACATAAAGTGTCAAAGAAGCGTCAAGCCGCCGTG
GACCACAACTCAAAGAAGCAAGCTTAAGCCTTCCCAGAGCACTCTCGAGG
GTGCGAATTGCATCACGAGCACCGCCTGTTCTAGCCGATACGTAGAACAT
GTGTTTGATGTGCGCCCGTGAACAGCTTGCCTCAAAACCTGCACCACCTC
CTTTCCCCACACCCCACTCGTCTTTCTGCATCCAATGGTTGTGTTTGTTG
CCTTTGAGTACCTGCGGGCCGCACTTGCGCGCTGACGTGTTCCGTGTTCC
TGGAAATGTGGTTTATGTTAAGACACAACGACACGAAACAGGGAACCAGA
GAATTCCGAGTTTCCTGTTCCCTGTTCCCTGTGTGGTCTAGGACGGTTAG
ACACGCCCTGAGCGGGGGCGCGGTGTTCTGCACATGTAGATGTTGTGGGT
GAGGCACTGCCGTAAAACATTCGAACTCCCCGAATCATGCTCGTCAAAGC
GAGGTTGAAGCCATGAATAGGTGGACTCGTCGCGTGCATATGGGGATGAC
CCTTCTTGCCCTACTGCTGTAACTACGTGTGTCGCAAGACCTTGCTGATC
TTCGTCATGGTGCACACACACCTGCGCCTGTTTGGTCGGATTGTGATTGT
GATTGTGATTGTGATTGTGATTGTGTTTTTGTTTTTTGTGTCTTGACCGT
ACGCTTCGTCGCCATTGCAACAATAGTGAGTCCTCCCTCAGTTGTGCTCG
ATCGTATGCATACACAGGATAGATGCTTGAAGTGAAGGGTTTCTCTTCTC
TTCTCCTCACTCTCCTCATTGGTGGGGGTTCAGAGATTCGTGGGCACCAA
AGACAGCGTCCGTTTCCCACACGATCGTTGAGCAGAATATGCATACCAAT
GCCTCTACTGCTTTAATCACCCAGTAGGCCACACTGCTCCATTCAATCCC
CAATGCCATATTCTTTCTGCACATTCAATTTTTCTTTCCCCCTGATGATC
ATCTTGATGGTGATGACCAGGTGCCGCGCGCAAAGGTTGCCCGGATAATG
CAGTACGTGCAGCGGCAGATCGACGACCTCGACGTCAAGGAGGGGCGCTG
GTTCACTGGCATAGGCATCGTGTGTTTCGTTTTCGGGAGTGTTCTGATCC
TGCTCAGGGTGGTTGTGGGATCCATCTTTCCGCAGCCCCCGTCAAGGCGA
GACTTATCTCGGAGACAGCTGTTCAAATAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1384:15260..17389-

>mRNA_E-fasciculatus_F_contig1384.2831.1 ID=mRNA_E-fasciculatus_F_contig1384.2831.1|Name=mRNA_E-fasciculatus_F_contig1384.2831.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=822bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1384:15260..17389- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGTTCCAATTTCTACGAGAGAGCCTGGTCAAGGCAGAGGTCGCTCA
CCTGGACAAGAAGGGGGAGCTAGTGAGGGGAAAGCGGGCGAGTCGGCGGC
AAAAGAGGGGGATGGCCCAGACGTACACCGTCACCTGGAAGGACGCGGAG
ACGCAGGACGAGACTACACTCCCCATCGCTAGCTACGGCCTTGGTCGAAA
GATGGAGTTCCAATTTCTACGAGAGAGCCTGGTCAAGGCAGAGGTCGCTC
ACCTGGACAAGAAGGGGGAGCTAGTGAGGGGAAAGCGGGCGAGTCGGCGG
CAAAAGAGGGGGATGGCCCAGACGTACACCGTCACCTGGAAGGACGCGGA
GACGCAGGACGAGACTACACTCCCCATCGCTAGCTACGGCCTTGGTCGAA
AGGTGCCGCGCGCAAAGGTTGCCCGGATAATGCAGTACGTGCAGCGGCAG
ATCGACGACCTCGACGTCAAGGAGGGGCGCTGGTTCACTGGCATAGGCAT
CGTGTGTTTCGTTTTCGGGAGTGTTCTGATCCTGCTCAGGGTGGTTGTGG
GATCCATCTTTCCGCAGCCCCCGTCAAGGCGAGACTTATCTCGGAGACAG
CTGTTCAAATAGGTGCCGCGCGCAAAGGTTGCCCGGATAATGCAGTACGT
GCAGCGGCAGATCGACGACCTCGACGTCAAGGAGGGGCGCTGGTTCACTG
GCATAGGCATCGTGTGTTTCGTTTTCGGGAGTGTTCTGATCCTGCTCAGG
GTGGTTGTGGGATCCATCTTTCCGCAGCCCCCGTCAAGGCGAGACTTATC
TCGGAGACAGCTGTTCAAATAG
back to top