mRNA_E-fasciculatus_F_contig1381.2810.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1381.2810.1
Unique NamemRNA_E-fasciculatus_F_contig1381.2810.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1381.2810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1381contigE-fasciculatus_F_contig1381:16173..16848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size676
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927875.2705789-CDS-E-fasciculatus_F_contig1381:16172..165801622927875.2705789-CDS-E-fasciculatus_F_contig1381:16172..16580Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1381 16173..16580 +
1695995732.9443815-CDS-E-fasciculatus_F_contig1381:16172..165801695995732.9443815-CDS-E-fasciculatus_F_contig1381:16172..16580Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1381 16173..16580 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927875.2837002-UTR-E-fasciculatus_F_contig1381:16580..168481622927875.2837002-UTR-E-fasciculatus_F_contig1381:16580..16848Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1381 16581..16848 +
1695995732.958338-UTR-E-fasciculatus_F_contig1381:16580..168481695995732.958338-UTR-E-fasciculatus_F_contig1381:16580..16848Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1381 16581..16848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1381.2810.1prot_E-fasciculatus_F_contig1381.2810.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1381 16173..16580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1381.2810.1

>prot_E-fasciculatus_F_contig1381.2810.1 ID=prot_E-fasciculatus_F_contig1381.2810.1|Name=mRNA_E-fasciculatus_F_contig1381.2810.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=136bp
ISFVRPPSPNDDLVVLAAVLEVLLYSGNTGRYARTTSARGVTILAGKRRT
RKKKMQSCESLDQSGFISDKCLLQHMYPKQSGMQEIPIHLHCIGRNNLDQ
TGQPVGALCTVAVFWGKDVPASSKKHVYVVAVHGP*
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mRNA from alignment at E-fasciculatus_F_contig1381:16173..16848+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1381.2810.1 ID=mRNA_E-fasciculatus_F_contig1381.2810.1|Name=mRNA_E-fasciculatus_F_contig1381.2810.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=676bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1381:16173..16848+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCTCATTTGTCCGCCCTCCTTCCCCGAACGATGACTTAGTAGTGCTTGC
CGCGGTTCTTGAAGTACTGCTGTACTCCGGTAATACCGGTAGGTATGCAC
GTACTACAAGTGCAAGAGGAGTCACCATACTGGCTGGTAAACGACGAACG
AGGAAAAAAAAAATGCAATCATGCGAGAGTTTGGACCAAAGCGGGTTCAT
TTCGGACAAATGCCTGTTGCAACATATGTACCCCAAACAAAGTGGTATGC
AGGAAATCCCGATACATCTACATTGTATCGGACGGAACAATTTGGATCAA
ACCGGGCAACCTGTTGGGGCCTTGTGCACCGTGGCGGTGTTTTGGGGTAA
AGACGTTCCCGCAAGTTCGAAAAAACACGTCTATGTTGTTGCCGTACATG
GGCCGTGACCATGTTGTCCAGGCTTGAGAATGAGGGATTGGGTGATTCGA
CTCTATCATGAGTGGTCTCCGCGAAGCAAGTTTTTGAGTATTCAGGTGTG
TCCGAGAAAGGGGTGGGTATACATACCCTTGTGCATTTCCCACAAACCAA
GCTTGCAGTAACTAGAAAATAGGGGGCAAAACAAGTAATCAAAACCAACC
GTGTGCCACCGCGCCACCTTTCACTTCATGAGAGATTGGTACTTACATGG
AGGATTTTCATGCACAGTCCAGGAAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1381:16173..16848+

>mRNA_E-fasciculatus_F_contig1381.2810.1 ID=mRNA_E-fasciculatus_F_contig1381.2810.1|Name=mRNA_E-fasciculatus_F_contig1381.2810.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1381:16173..16848+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCTCATTTGTCCGCCCTCCTTCCCCGAACGATGACTTAGTAGTGCTTGC
CGCGGTTCTTGAAGTACTGCTGTACTCCGGTAATACCGGTAGGTATGCAC
GTACTACAAGTGCAAGAGGAGTCACCATACTGGCTGGTAAACGACGAACG
AGGAAAAAAAAAATGCAATCATGCGAGAGTTTGGACCAAAGCGGGTTCAT
TTCGGACAAATGCCTGTTGCAACATATGTACCCCAAACAAAGTGGTATGC
AGGAAATCCCGATACATCTACATTGTATCGGACGGAACAATTTGGATCAA
ACCGGGCAACCTGTTGGGGCCTTGTGCACCGTGGCGGTGTTTTGGGGTAA
AGACGTTCCCGCAAGTTCGAAAAAACACGTCTATGTTGTTGCCGTACATG
GGCCGTGAATCTCATTTGTCCGCCCTCCTTCCCCGAACGATGACTTAGTA
GTGCTTGCCGCGGTTCTTGAAGTACTGCTGTACTCCGGTAATACCGGTAG
GTATGCACGTACTACAAGTGCAAGAGGAGTCACCATACTGGCTGGTAAAC
GACGAACGAGGAAAAAAAAAATGCAATCATGCGAGAGTTTGGACCAAAGC
GGGTTCATTTCGGACAAATGCCTGTTGCAACATATGTACCCCAAACAAAG
TGGTATGCAGGAAATCCCGATACATCTACATTGTATCGGACGGAACAATT
TGGATCAAACCGGGCAACCTGTTGGGGCCTTGTGCACCGTGGCGGTGTTT
TGGGGTAAAGACGTTCCCGCAAGTTCGAAAAAACACGTCTATGTTGTTGC
CGTACATGGGCCGTGA
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