mRNA_E-fasciculatus_F_contig1381.2808.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1381.2808.1 vs. uniprot
Match: D7FL11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL11_ECTSI) HSP 1 Score: 120 bits (300), Expect = 2.730e-29 Identity = 63/103 (61.17%), Postives = 66/103 (64.08%), Query Frame = 3
Query: 63 MPIRSWFPNMVMAMIAGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTPSKGSPSVPS 371
MPIRSWFPNMVMAMI+GPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVM WTP+KG PS+PS
Sbjct: 1 MPIRSWFPNMVMAMISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTFASPQWTPNKGPPSLPS 103
BLAST of mRNA_E-fasciculatus_F_contig1381.2808.1 vs. uniprot
Match: A0A835YVT8_9STRA (Ribosomal protein L23/L15e core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT8_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.030e-12 Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 3
Query: 63 MPIRSWFPNMVMAMIAGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVM 227
M ++ WFP+ M ++ P+R RP QA+F++ PKMTK EVKEYL K+Y VPVKKVM
Sbjct: 1 MGVKEWFPSFFMQLVTMPTRGRPQQAAFRVSPKMTKLEVKEYLLKVYGVPVKKVM 55
BLAST of mRNA_E-fasciculatus_F_contig1381.2808.1 vs. uniprot
Match: A0A7S3QJC9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJC9_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 3.330e-8 Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 3
Query: 69 IRSWFPNMVMAM--IAGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKV 224
R W PNM + + +++ PA A+F+++PKMTK E+KEYLTKIYN+PVKKV
Sbjct: 10 FRVWMPNMPILLDGAKNATKTAPATATFRVKPKMTKHEIKEYLTKIYNLPVKKV 63
BLAST of mRNA_E-fasciculatus_F_contig1381.2808.1 vs. uniprot
Match: A0A448YYR3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYR3_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.130e-7 Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 3
Query: 69 IRSWFPNMVMAMIAGPSRS--RPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKV 224
R W PNM M +++ + + +PA+A+F++ P+MTK E+KEYLTKIY +PV+KV
Sbjct: 9 FRMWMPNMPMMLVSAKNATARQPARATFRVLPRMTKHEIKEYLTKIYGLPVQKV 62
BLAST of mRNA_E-fasciculatus_F_contig1381.2808.1 vs. uniprot
Match: A0A1E7FSR6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSR6_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.330e-7 Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 3
Query: 69 IRSWFPNMVMAMIAGPSRS--RPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKV 224
R W PNM M M++ + + +PA+A+F++ P+MTK E+KEYLTKIY +PV++V
Sbjct: 12 FRMWMPNMPMLMVSAKNATARQPARATFRVLPRMTKHEIKEYLTKIYGLPVRQV 65
BLAST of mRNA_E-fasciculatus_F_contig1381.2808.1 vs. uniprot
Match: A0A7S4IBC0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IBC0_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 2.720e-7 Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 3
Query: 72 RSWFPNMVMAMIAGPS--RSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKV 224
R W P M + ++ S S+ A A F++ PKMTK E+KEYLTKIYN+PVKKV
Sbjct: 11 RMWMPTMPITLVKARSANESQSAMAVFRVMPKMTKHEIKEYLTKIYNLPVKKV 63
BLAST of mRNA_E-fasciculatus_F_contig1381.2808.1 vs. uniprot
Match: A0A482RUQ8_9ARCH (50S ribosomal protein L23 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUQ8_9ARCH) HSP 1 Score: 56.2 bits (134), Expect = 8.200e-7 Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 3
Query: 69 IRSWFPNMVMAMIAGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKV 224
++ +FPN M +++ +++ PA A + P+MTK E+KEYLTKIYNV V+KV
Sbjct: 2 VKVYFPNFFMRLLSLNTQASPAVAKLHVSPRMTKTEIKEYLTKIYNVDVQKV 53
BLAST of mRNA_E-fasciculatus_F_contig1381.2808.1 vs. uniprot
Match: A0A7S2RP09_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RP09_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.380e-6 Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 3
Query: 69 IRSWFPNMVMAMIAG--PSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKV 224
R W P M + +++ + + PA A+F++ PKMTK E+KEYLTKIYN+PV +V
Sbjct: 10 FRMWMPTMPITLVSARNATETAPAMATFRVLPKMTKHEIKEYLTKIYNLPVTQV 63
BLAST of mRNA_E-fasciculatus_F_contig1381.2808.1 vs. uniprot
Match: A0A7S3HDG0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDG0_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 1.590e-6 Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 3
Query: 69 IRSWFPNMVMAMIAGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVM 227
+R +FP+M M +I + P QA + P MTK E+ EYLTKIYNV V+KVM
Sbjct: 7 VRVFFPSMFMRLITWKPKKTPPQALLHVPPSMTKHEISEYLTKIYNVDVQKVM 59
BLAST of mRNA_E-fasciculatus_F_contig1381.2808.1 vs. uniprot
Match: K0TJH6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJH6_THAOC) HSP 1 Score: 57.4 bits (137), Expect = 1.950e-6 Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 3
Query: 42 VQKPGSRMPI--RSWFPNMVMAMIAGPSRS--RPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKV 224
K G R + R W P+M + ++ + + PAQA+F++ PKMTK EVKEYLTKIY +PV KV
Sbjct: 16 ASKAGKRPQLGNRMWMPHMPLVLLDAQNATLDTPAQATFRVLPKMTKHEVKEYLTKIYGLPVVKV 80 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1381.2808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1381.2808.1 >prot_E-fasciculatus_F_contig1381.2808.1 ID=prot_E-fasciculatus_F_contig1381.2808.1|Name=mRNA_E-fasciculatus_F_contig1381.2808.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp MPIRSWFPNMVMAMIAGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPback to top mRNA from alignment at E-fasciculatus_F_contig1381:8789..11958+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1381.2808.1 ID=mRNA_E-fasciculatus_F_contig1381.2808.1|Name=mRNA_E-fasciculatus_F_contig1381.2808.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3170bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1381:8789..11958+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1381:8789..11958+ >mRNA_E-fasciculatus_F_contig1381.2808.1 ID=mRNA_E-fasciculatus_F_contig1381.2808.1|Name=mRNA_E-fasciculatus_F_contig1381.2808.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1381:8789..11958+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |