mRNA_E-fasciculatus_F_contig13735.2761.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13735.2761.1
Unique NamemRNA_E-fasciculatus_F_contig13735.2761.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13735.2761.1 vs. uniprot
Match: D7FH23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH23_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 4.420e-105
Identity = 227/316 (71.84%), Postives = 235/316 (74.37%), Query Frame = 2 
Query:   86 MEARNVWVAWLALETLKAPLCGSFVLQQAAPRGRTKYGAAAGSHCSAAAPRASRCSSLRGXXXPXXXXXXXLRSTRASSSALALAPLSATADGDTLGGDGVGKPGDKPAADSD--SDETGGTAKDEEAAVSEADVATETRRLMSVPTIDIKLELQMRGVEHRDAFEKTDLARRLAEARVSSSGXXXXXXXXXXXXXXXTAKA----AGRNYGGAPGDGPRENAHRPSEATATTVNEPQE---TAVATEG-GVASSGGGNSAYARDVAKGTRMGKAALARELNGMGIAHSRLSDVSVLARQYAGGRQEAREDARRFP 1003
            MEARNVWVAWLALETLKAPLCGSFVLQQA P GRTKY  AAGS CSAA PRA RCS  RG   P       LRS RASSSA+A  PLS TAD DTLG DGVGK GDKP A S   S ETGG       A    DVATETRRLMS PTIDIKLELQMRGVEHRDAFEK DLARRLAEARVSS G        XXXXXXX        AGR++GGA  DGPRENAHR ++A+    NEPQ    TAVATEG G A  GG N AYARDVA+GTRMGKAALARELNGMGIAHSRLSD+SVLARQYA  RQEAREDARRFP
Sbjct:    1 MEARNVWVAWLALETLKAPLCGSFVLQQAPPPGRTKYEPAAGSRCSAATPRA-RCSCSRGLHDPLLRPL--LRSPRASSSAIA--PLSGTADDDTLGRDGVGKAGDKPPAASSGSSHETGGVGTATGEAAVGTDVATETRRLMSEPTIDIKLELQMRGVEHRDAFEKADLARRLAEARVSSCGNNPSPSPDXXXXXXXXXXXXXXXAGRDFGGAAADGPRENAHRSNKASTMMGNEPQAAAATAVATEGRGAAPDGGSNRAYARDVARGTRMGKAALARELNGMGIAHSRLSDLSVLARQYAARRQEAREDARRFP 311
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BLAST of mRNA_E-fasciculatus_F_contig13735.2761.1 vs. uniprot
Match: A0A6H5JDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP5_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 3.950e-94
Identity = 210/298 (70.47%), Postives = 220/298 (73.83%), Query Frame = 2 
Query:  134 KAPLCGSFVLQQAAPRGRTKYGAAAGSHCSAAAPRASRCSSLRGXXXPXXXXXXXLRSTRASSSALALAPLSATADGDTLGGDGVGKPGDKPA---ADSDSDETGGTAKDEEAAVSEADVATETRRLMSVPTIDIKLELQMRGVEHRDAFEKTDLARRLAEARVSSSGXXXXXXXXXXXXXXXTAKAAGRNYGGAPGDGPRENAHRPSEATATTVNEPQE---TAVATEG-GVASSGGGNSAYARDVAKGTRMGKAALARELNGMGIAHSRLSDVSVLARQYAGGRQEAREDARRFPP 1006
            +APLCGSFVLQQA   GRTKY AAAG  CSAAAPRA RCS L G   P       LRS RASSSA+A  PLS TAD DT+GGDGVGKPGDKP    +D DSDETGG       A    DVATETRRLMSVPTIDIKLELQMRGVEHRDAFEK DLARRLAEARVS  G        XXXXXXX         GGA   GPRE+AHR ++A+ TT NEPQ    TAV TEG G AS G  +SAYARDVA+GTRMGKAALARELNGMGIAHSRLSDVSVLARQYA  RQEAREDARRFPP
Sbjct:    8 QAPLCGSFVLQQAPSPGRTKYEAAAGPRCSAAAPRA-RCSCLWGLHDPLLRPL--LRSPRASSSAIA--PLSGTADDDTIGGDGVGKPGDKPPGADSDFDSDETGGVGTATGRAAVSTDVATETRRLMSVPTIDIKLELQMRGVEHRDAFEKADLARRLAEARVSCCGNNPSPSHDXXXXXXXXXXXXXXXLGGAAAHGPRESAHRSNKASTTTGNEPQAAAATAVPTEGRGAASDGCSSSAYARDVARGTRMGKAALARELNGMGIAHSRLSDVSVLARQYAARRQEAREDARRFPP 300
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BLAST of mRNA_E-fasciculatus_F_contig13735.2761.1 vs. uniprot
Match: A0A836CCS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.710e-7
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 2 
Query:  503 LMSVPTIDIKLELQMRGVEHRDAFEKTDLARRLAEARVSSS 625
            +M++PTIDIKLELQMRG++HRDA EK +LARRLA+AR S +
Sbjct:   82 IMTMPTIDIKLELQMRGIDHRDALEKQELARRLAQARASQA 122
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13735.2761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FH23_ECTSI4.420e-10571.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDP5_9PHAE3.950e-9470.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCS4_9STRA1.710e-770.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13735contigE-fasciculatus_F_contig13735:248..2070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003220.1
Exons2
Model size1036
Cds size951
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13735.2761.1prot_E-fasciculatus_F_contig13735.2761.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13735 248..1985 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927867.5589275-CDS-E-fasciculatus_F_contig13735:247..11471622927867.5589275-CDS-E-fasciculatus_F_contig13735:247..1147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13735 248..1147 -
1695995730.5575418-CDS-E-fasciculatus_F_contig13735:247..11471695995730.5575418-CDS-E-fasciculatus_F_contig13735:247..1147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13735 248..1147 -
1622927867.605397-CDS-E-fasciculatus_F_contig13735:1934..19851622927867.605397-CDS-E-fasciculatus_F_contig13735:1934..1985Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13735 1935..1985 -
1695995730.5674407-CDS-E-fasciculatus_F_contig13735:1934..19851695995730.5674407-CDS-E-fasciculatus_F_contig13735:1934..1985Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13735 1935..1985 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927867.6252851-UTR-E-fasciculatus_F_contig13735:1985..20701622927867.6252851-UTR-E-fasciculatus_F_contig13735:1985..2070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13735 1986..2070 -
1695995730.5862932-UTR-E-fasciculatus_F_contig13735:1985..20701695995730.5862932-UTR-E-fasciculatus_F_contig13735:1985..2070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13735 1986..2070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13735.2761.1

>prot_E-fasciculatus_F_contig13735.2761.1 ID=prot_E-fasciculatus_F_contig13735.2761.1|Name=mRNA_E-fasciculatus_F_contig13735.2761.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=317bp
MEARNVWVAWLALETLKAPLCGSFVLQQAAPRGRTKYGAAAGSHCSAAAP
RASRCSSLRGLRNPLRPRLPQLRSTRASSSALALAPLSATADGDTLGGDG
VGKPGDKPAADSDSDETGGTAKDEEAAVSEADVATETRRLMSVPTIDIKL
ELQMRGVEHRDAFEKTDLARRLAEARVSSSGSPSPSPDDDDAATAATAKA
AGRNYGGAPGDGPRENAHRPSEATATTVNEPQETAVATEGGVASSGGGNS
AYARDVAKGTRMGKAALARELNGMGIAHSRLSDVSVLARQYAGGRQEARE
DARRFPPRPAGAGSSSS
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mRNA from alignment at E-fasciculatus_F_contig13735:248..2070-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13735.2761.1 ID=mRNA_E-fasciculatus_F_contig13735.2761.1|Name=mRNA_E-fasciculatus_F_contig13735.2761.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1823bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13735:248..2070- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCTGTGCTTGCTGTGCTTGGTTAATCTCGGCGTGCTCCAGGCGAGATC
GATGCTAGACGCGCCCTGAGCGTAACGGGCGGAAGATGGAGGCCCGCAAC
GTGTGGGTCGCTTGGCTTGCGCTGGAAACACTAAAGGTGGGGCTAGGACT
TGCTTGAAGAGATTTGAGTGAATAGTCTATTTAGATAGACATATGCATTG
TGGTTTGAAATTCGAAGCGAAGCCGCAGCAGCAAGTCATTGGGCGACCGC
CCTTGGCTCCCGTGCTGCGCCCCTTGCAAAGGGCTGCGTTTTGAGCCGAT
CGTAGAGAAGAGGGGACTGCTGTACACGTGAACGCTGTGCACGCACAAGG
TACACTACGGTCATTTGCGTTGGAGTTGACGTGGGGTCCAGCTGCAGATT
CGGGCCATGTTGCGGCCATAACACGGCAGCTCTTGCCGACCTTTGCCGGC
GTCCTTCACAGCAGTTCACCCCTTCTCGGTCCCCAACAACGAAACAGCGT
ATCATCGCATGAAGCTGTTGAAACTGCATGCTATGCTGCTAACCAATCTT
TCGCGCGTTGAAGTTGTCGCTGTCCAGTGAAACGCCACCGCAAGCTGCAC
TTCCGATACACCCATCAATTGCTGTTGTTGCAGCTGCCGCCGCTGGCTGC
GGTGGGTAGAAGATAGAGCTGGCCCGACCAGTGTGCATGAATACAACGAC
GACGGCTTGAACGAAGTTGCGGTCAGAACACATGGTTAGCGGCCCGCCAT
GCACTCAATGAAAATGAAGAGTCTCCGGGTACTCGAAAGTATAATCGTTT
GCGGGCGCTCAACACAAATCACGTGTGATCTTTTTTGGTGCGCAAGATGG
CAGACAGATTTGTGAAAGTTAAAACTTGCCGGTTGCAACAACCTCCAACC
GATTTGCTTGTTCCATTCTGCAGGCCCCCCTTTGCGGGTCCTTCGTGCTC
CAACAAGCCGCCCCCCGTGGCCGCACCAAATACGGAGCGGCGGCGGGGTC
CCACTGCTCCGCAGCAGCTCCTCGGGCCAGCCGCTGCTCTTCCTTGCGGG
GCCTCCGCAACCCCCTTCGACCCCGACTGCCGCAGCTGCGGAGCACCCGA
GCATCCTCCTCCGCCTTAGCACTAGCACCTCTCTCGGCCACGGCCGACGG
CGACACCCTAGGCGGAGACGGGGTCGGGAAGCCCGGGGACAAACCAGCCG
CCGACAGCGATAGTGACGAAACGGGCGGTACAGCAAAGGATGAGGAGGCG
GCAGTGTCGGAGGCGGATGTGGCGACGGAGACGCGGCGCCTCATGTCCGT
GCCGACGATCGACATCAAGCTCGAGCTGCAGATGCGGGGCGTGGAGCACC
GCGACGCGTTCGAGAAGACGGACCTCGCCAGGCGCCTCGCCGAGGCCCGC
GTGTCTTCTTCCGGCAGTCCTTCCCCTTCCCCTGATGACGATGATGCCGC
TACTGCTGCAACTGCCAAAGCGGCAGGACGCAACTACGGCGGCGCACCCG
GCGACGGGCCGAGAGAGAACGCGCATCGGCCATCAGAAGCAACAGCGACG
ACGGTTAACGAACCACAAGAAACGGCGGTGGCCACAGAAGGCGGGGTTGC
GTCGTCGGGCGGTGGCAACAGCGCGTACGCCCGCGACGTGGCAAAGGGGA
CGCGCATGGGGAAGGCCGCCCTGGCCCGGGAGCTGAACGGCATGGGGATC
GCGCACTCGCGCCTGTCGGACGTGTCCGTCCTGGCTCGCCAGTACGCGGG
CGGGCGGCAGGAGGCAAGGGAGGACGCGCGACGATTTCCACCCCGCCCCG
CGGGGGCCGGCAGCAGTTCTTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13735:248..2070-

>mRNA_E-fasciculatus_F_contig13735.2761.1 ID=mRNA_E-fasciculatus_F_contig13735.2761.1|Name=mRNA_E-fasciculatus_F_contig13735.2761.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1902bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13735:248..2070- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGCCCGCAACGTGTGGGTCGCTTGGCTTGCGCTGGAAACACTAAA
GATGGAGGCCCGCAACGTGTGGGTCGCTTGGCTTGCGCTGGAAACACTAA
AGGCCCCCCTTTGCGGGTCCTTCGTGCTCCAACAAGCCGCCCCCCGTGGC
CGCACCAAATACGGAGCGGCGGCGGGGTCCCACTGCTCCGCAGCAGCTCC
TCGGGCCAGCCGCTGCTCTTCCTTGCGGGGCCTCCGCAACCCCCTTCGAC
CCCGACTGCCGCAGCTGCGGAGCACCCGAGCATCCTCCTCCGCCTTAGCA
CTAGCACCTCTCTCGGCCACGGCCGACGGCGACACCCTAGGCGGAGACGG
GGTCGGGAAGCCCGGGGACAAACCAGCCGCCGACAGCGATAGTGACGAAA
CGGGCGGTACAGCAAAGGATGAGGAGGCGGCAGTGTCGGAGGCGGATGTG
GCGACGGAGACGCGGCGCCTCATGTCCGTGCCGACGATCGACATCAAGCT
CGAGCTGCAGATGCGGGGCGTGGAGCACCGCGACGCGTTCGAGAAGACGG
ACCTCGCCAGGCGCCTCGCCGAGGCCCGCGTGTCTTCTTCCGGCAGTCCT
TCCCCTTCCCCTGATGACGATGATGCCGCTACTGCTGCAACTGCCAAAGC
GGCAGGACGCAACTACGGCGGCGCACCCGGCGACGGGCCGAGAGAGAACG
CGCATCGGCCATCAGAAGCAACAGCGACGACGGTTAACGAACCACAAGAA
ACGGCGGTGGCCACAGAAGGCGGGGTTGCGTCGTCGGGCGGTGGCAACAG
CGCGTACGCCCGCGACGTGGCAAAGGGGACGCGCATGGGGAAGGCCGCCC
TGGCCCGGGAGCTGAACGGCATGGGGATCGCGCACTCGCGCCTGTCGGAC
GTGTCCGTCCTGGCTCGCCAGTACGCGGGCGGGCGGCAGGAGGCAAGGGA
GGACGCGCGACGATTTCCACCCCGCCCCGCGGGGGCCGGCAGCAGTTCTT
CCGCCCCCCTTTGCGGGTCCTTCGTGCTCCAACAAGCCGCCCCCCGTGGC
CGCACCAAATACGGAGCGGCGGCGGGGTCCCACTGCTCCGCAGCAGCTCC
TCGGGCCAGCCGCTGCTCTTCCTTGCGGGGCCTCCGCAACCCCCTTCGAC
CCCGACTGCCGCAGCTGCGGAGCACCCGAGCATCCTCCTCCGCCTTAGCA
CTAGCACCTCTCTCGGCCACGGCCGACGGCGACACCCTAGGCGGAGACGG
GGTCGGGAAGCCCGGGGACAAACCAGCCGCCGACAGCGATAGTGACGAAA
CGGGCGGTACAGCAAAGGATGAGGAGGCGGCAGTGTCGGAGGCGGATGTG
GCGACGGAGACGCGGCGCCTCATGTCCGTGCCGACGATCGACATCAAGCT
CGAGCTGCAGATGCGGGGCGTGGAGCACCGCGACGCGTTCGAGAAGACGG
ACCTCGCCAGGCGCCTCGCCGAGGCCCGCGTGTCTTCTTCCGGCAGTCCT
TCCCCTTCCCCTGATGACGATGATGCCGCTACTGCTGCAACTGCCAAAGC
GGCAGGACGCAACTACGGCGGCGCACCCGGCGACGGGCCGAGAGAGAACG
CGCATCGGCCATCAGAAGCAACAGCGACGACGGTTAACGAACCACAAGAA
ACGGCGGTGGCCACAGAAGGCGGGGTTGCGTCGTCGGGCGGTGGCAACAG
CGCGTACGCCCGCGACGTGGCAAAGGGGACGCGCATGGGGAAGGCCGCCC
TGGCCCGGGAGCTGAACGGCATGGGGATCGCGCACTCGCGCCTGTCGGAC
GTGTCCGTCCTGGCTCGCCAGTACGCGGGCGGGCGGCAGGAGGCAAGGGA
GGACGCGCGACGATTTCCACCCCGCCCCGCGGGGGCCGGCAGCAGTTCTT
CC
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