mRNA_E-fasciculatus_F_contig13724.2754.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13724.2754.1
Unique NamemRNA_E-fasciculatus_F_contig13724.2754.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13724.2754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13724contigE-fasciculatus_F_contig13724:2177..2387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_006290.1
Exons2
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927866.5642545-CDS-E-fasciculatus_F_contig13724:2176..22411622927866.5642545-CDS-E-fasciculatus_F_contig13724:2176..2241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13724 2177..2241 -
1695995730.1124277-CDS-E-fasciculatus_F_contig13724:2176..22411695995730.1124277-CDS-E-fasciculatus_F_contig13724:2176..2241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13724 2177..2241 -
1622927866.5814312-CDS-E-fasciculatus_F_contig13724:2275..23871622927866.5814312-CDS-E-fasciculatus_F_contig13724:2275..2387Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13724 2276..2387 -
1695995730.1216245-CDS-E-fasciculatus_F_contig13724:2275..23871695995730.1216245-CDS-E-fasciculatus_F_contig13724:2275..2387Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13724 2276..2387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13724.2754.1prot_E-fasciculatus_F_contig13724.2754.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13724 2177..2387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13724.2754.1

>prot_E-fasciculatus_F_contig13724.2754.1 ID=prot_E-fasciculatus_F_contig13724.2754.1|Name=mRNA_E-fasciculatus_F_contig13724.2754.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=59bp
KPSQVQESHRRRAVVVWTVSVVAISACEPIDTTNSIVYGNKTRLLVDGRS
SAEHNTSR*
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mRNA from alignment at E-fasciculatus_F_contig13724:2177..2387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13724.2754.1 ID=mRNA_E-fasciculatus_F_contig13724.2754.1|Name=mRNA_E-fasciculatus_F_contig13724.2754.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=211bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13724:2177..2387- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAACCGAGCCAGGTACAGGAATCGCACAGGCGTCGGGCGGTGGTGGTTTG
GACGGTGTCGGTGGTCGCAATCAGTGCATGTGAGCCCATCGACACAACTA
ACTCGATAGTCTGTGTATGGTCAAAACCGCAAACCTTGCACCATAGATGG
AAATAAAACCAGGCTGCTGGTAGACGGTCGATCGAGCGCCGAGCATAACA
CGTCGAGATAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13724:2177..2387-

>mRNA_E-fasciculatus_F_contig13724.2754.1 ID=mRNA_E-fasciculatus_F_contig13724.2754.1|Name=mRNA_E-fasciculatus_F_contig13724.2754.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=354bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13724:2177..2387- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAACCGAGCCAGGTACAGGAATCGCACAGGCGTCGGGCGGTGGTGGTTTG
GACGGTGTCGGTGGTCGCAATCAGTGCATGTGAGCCCATCGACACAACTA
ACTCGATAGTCTAAACCGAGCCAGGTACAGGAATCGCACAGGCGTCGGGC
GGTGGTGGTTTGGACGGTGTCGGTGGTCGCAATCAGTGCATGTGAGCCCA
TCGACACAACTAACTCGATAGTCTATGGAAATAAAACCAGGCTGCTGGTA
GACGGTCGATCGAGCGCCGAGCATAACACGTCGAGATAAATGGAAATAAA
ACCAGGCTGCTGGTAGACGGTCGATCGAGCGCCGAGCATAACACGTCGAG
ATAA
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