mRNA_E-fasciculatus_F_contig13720.2753.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13720.2753.1
Unique NamemRNA_E-fasciculatus_F_contig13720.2753.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13720.2753.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 4.620e-54
Identity = 113/140 (80.71%), Postives = 125/140 (89.29%), Query Frame = 1 
Query:   25 QSVPVYARRLRLTVSENEEAFFFLPNEEPLDHNRRDWVSKRRAEEAAARRKLSAMPAVANGDRGERNAFDDVLPGD-YDNDDASFDLGDDDDVVGDEEAEMEDGLYGSGASXXXXXXXIRG--LEQEIQALAGNLDGFSD 435
            QSVPVYARRLRLTVSENEEA+FF PNEEPLDH+RRDWVSKRRAEEAA+RRKLSA+PAVANGD GE+NAFDD LPGD YD+D+AS+DLGDD  VVGDEEA++E+G + SG  XXXXXXX     LEQEIQALAGNLDGFSD
Sbjct:  951 QSVPVYARRLRLTVSENEEAYFFAPNEEPLDHHRRDWVSKRRAEEAASRRKLSAVPAVANGDGGEQNAFDDALPGDHYDDDNASYDLGDD--VVGDEEADVEEGSHASGXXXXXXXXXXXXXXLEQEIQALAGNLDGFSD 1088
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BLAST of mRNA_E-fasciculatus_F_contig13720.2753.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 8.820e-54
Identity = 115/143 (80.42%), Postives = 123/143 (86.01%), Query Frame = 1 
Query:   25 QSVPVYARRLRLTVSENEEAFFFLPNEEPLDHNRRDWVSKRRAEEAAARRKLSAMPAVANGDRGERNAFDDVLPGDY-DNDDASFDLGDDDDVVGDEEAEMEDGLYGSGASXXXXXXXIRG-LEQEIQALAGNLDGFSDTSST 447
            QSVPVYARRLRLTVSE+EEA+FF PNEEPLD NRRDWVSKRRAEEAAARRKLSA+P  ANGD GE+NAFDD LPGDY D++ ASFDLGDD  VVGDEEAE+ED  Y SG  XXXXXXX    LEQEIQALAGNLDGFSD S+T
Sbjct: 1942 QSVPVYARRLRLTVSEDEEAYFFAPNEEPLDRNRRDWVSKRRAEEAAARRKLSAVPTAANGDGGEQNAFDDALPGDYYDDEKASFDLGDD--VVGDEEAEVEDDSYASGXXXXXXXXXXXXXLEQEIQALAGNLDGFSDASTT 2082
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13720.2753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LME4_ECTSI4.620e-5480.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K463_9PHAE8.820e-5480.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13720contigE-fasciculatus_F_contig13720:2008..3510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size449
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927866.4709325-CDS-E-fasciculatus_F_contig13720:2009..22611622927866.4709325-CDS-E-fasciculatus_F_contig13720:2009..2261Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13720 2010..2261 -
1695995730.0940242-CDS-E-fasciculatus_F_contig13720:2009..22611695995730.0940242-CDS-E-fasciculatus_F_contig13720:2009..2261Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13720 2010..2261 -
1622927866.5063336-CDS-E-fasciculatus_F_contig13720:3315..35101622927866.5063336-CDS-E-fasciculatus_F_contig13720:3315..3510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13720 3316..3510 -
1695995730.1026068-CDS-E-fasciculatus_F_contig13720:3315..35101695995730.1026068-CDS-E-fasciculatus_F_contig13720:3315..3510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13720 3316..3510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13720.2753.1prot_E-fasciculatus_F_contig13720.2753.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13720 2010..3510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13720.2753.1

>prot_E-fasciculatus_F_contig13720.2753.1 ID=prot_E-fasciculatus_F_contig13720.2753.1|Name=mRNA_E-fasciculatus_F_contig13720.2753.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=149bp
PNTDRPNEQSVPVYARRLRLTVSENEEAFFFLPNEEPLDHNRRDWVSKRR
AEEAAARRKLSAMPAVANGDRGERNAFDDVLPGDYDNDDASFDLGDDDDV
VGDEEAEMEDGLYGSGASGGGGGGGIRGLEQEIQALAGNLDGFSDTSST
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mRNA from alignment at E-fasciculatus_F_contig13720:2008..3510-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13720.2753.1 ID=mRNA_E-fasciculatus_F_contig13720.2753.1|Name=mRNA_E-fasciculatus_F_contig13720.2753.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1503bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13720:2008..3510- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGAACACCGACCGCCCAAACGAACAGTCCGTGCCGGTGTATGCACGTCG
GTTACGGCTCACGGTTTCGGAGAACGAGGAGGCGTTTTTCTTCTTGCCCA
ACGAGGAACCGCTGGACCACAACAGGCGGGACTGGGTGTCGAAGAGGCGG
GCCGAGGAAGCGGCCGCCAGGAGAAAGCTCTCGGCGATGCCGGCGGTATG
TATTGTAGGGTTTTGGCGTGCGTTTGTCTGTCTACCGCTCTTTGTGTCTT
TCTGTCTGTCTGTGAGTCTTTGCCTGCCTATCGTGTGTGATGTGTCCGTC
TGTCTGTCTGGTGCTGTCTCTCTGTCTCTCTGTCTGCTTGTCGGCCTGTC
TGTCGGTGTCTGTCTGTCTGTCCATAGGCGATACGCGTAAAAGACATCAC
ACATCACACGCCCTTGACCGAAGATACCATACCACACACCCTTGACCGAT
TTTCACAGCTTGGTTGCCCCACAGCAGAAAGAGTGGCGAAGCCGAAAATG
GCGGGGCTAGAACCGTATCGCCAAGGGCTTTCCGAAAACGCATAATCTGA
ATCGACGCGCTGTTCGTCGTGGAGTATTGGAGCTTTCCAAATGGGTCCAA
GGGGTGTGATATCTGACGTCATGTCACGTACGGTAGCCTACCTTCGTGTC
GTTCGAACTTGGCGTGAAAACACAAGAGCTGCAAATTCGCCTTAGGTCGT
CGGGGCACGACGACACCGGCCGAACAGCCGTCATCCGCAACAACCAGGCA
CAACGTAATTTCTTCACGGCGTACGCTGAGAAGCGCTCATCTTCATTTCT
TAGTACATAACACAACGAATTCACCTCTATCCACAAATCAAAGTGCGGGA
CAAATTAGCATGAATCCGTATAGGGTTAGCGTCGTGCACACCTCCCTGGG
GCTGACTGTTGATACGTCAATGAATGATGTTTACATGGTGTATTTATCGG
CTTCTCACAAGGCAGAGAGGCAAAAGTACGGCAGGAGAGGTGGGGAGGTA
GAGGAGCTATTCCGTGTGGCGGAGCTCATAACCGGCAGAAAGGCTGCGAG
CACTGGTTTAATGTGATGCCAAAACAAAAAAAGAGAGACAAAGAGAGGGG
TCTCGGAGAGTACAGACACAGCACGCAATCCAAGAGTCCAGCTACTCGAA
TAGACAGACCATCGAACCGACACAAAAACCGTCAAACCAAGCCGTGAAAG
AGTCACACGGACGTGTTCGACACCACCGGTGCTGCTTTTTCGGGGTCAGG
TGGCGAACGGCGACCGGGGAGAGCGAAACGCCTTCGACGACGTTCTTCCC
GGAGACTACGACAACGACGACGCGTCCTTCGATCTGGGAGATGATGATGA
TGTCGTCGGGGACGAGGAGGCGGAGATGGAAGACGGCTTGTACGGGAGCG
GGGCAAGCGGCGGCGGCGGCGGCGGCGGTATCCGCGGGCTGGAGCAGGAG
ATCCAGGCCTTGGCCGGGAACCTGGACGGCTTTTCGGACACCAGCAGCAC
CAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13720:2008..3510-

>mRNA_E-fasciculatus_F_contig13720.2753.1 ID=mRNA_E-fasciculatus_F_contig13720.2753.1|Name=mRNA_E-fasciculatus_F_contig13720.2753.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13720:2008..3510- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGAACACCGACCGCCCAAACGAACAGTCCGTGCCGGTGTATGCACGTCG
GTTACGGCTCACGGTTTCGGAGAACGAGGAGGCGTTTTTCTTCTTGCCCA
ACGAGGAACCGCTGGACCACAACAGGCGGGACTGGGTGTCGAAGAGGCGG
GCCGAGGAAGCGGCCGCCAGGAGAAAGCTCTCGGCGATGCCGGCGCCGAA
CACCGACCGCCCAAACGAACAGTCCGTGCCGGTGTATGCACGTCGGTTAC
GGCTCACGGTTTCGGAGAACGAGGAGGCGTTTTTCTTCTTGCCCAACGAG
GAACCGCTGGACCACAACAGGCGGGACTGGGTGTCGAAGAGGCGGGCCGA
GGAAGCGGCCGCCAGGAGAAAGCTCTCGGCGATGCCGGCGGTGGCGAACG
GCGACCGGGGAGAGCGAAACGCCTTCGACGACGTTCTTCCCGGAGACTAC
GACAACGACGACGCGTCCTTCGATCTGGGAGATGATGATGATGTCGTCGG
GGACGAGGAGGCGGAGATGGAAGACGGCTTGTACGGGAGCGGGGCAAGCG
GCGGCGGCGGCGGCGGCGGTATCCGCGGGCTGGAGCAGGAGATCCAGGCC
TTGGCCGGGAACCTGGACGGCTTTTCGGACACCAGCAGCACCGTGGCGAA
CGGCGACCGGGGAGAGCGAAACGCCTTCGACGACGTTCTTCCCGGAGACT
ACGACAACGACGACGCGTCCTTCGATCTGGGAGATGATGATGATGTCGTC
GGGGACGAGGAGGCGGAGATGGAAGACGGCTTGTACGGGAGCGGGGCAAG
CGGCGGCGGCGGCGGCGGCGGTATCCGCGGGCTGGAGCAGGAGATCCAGG
CCTTGGCCGGGAACCTGGACGGCTTTTCGGACACCAGCAGCACC
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