mRNA_E-fasciculatus_F_contig13720.2752.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13720.2752.1
Unique NamemRNA_E-fasciculatus_F_contig13720.2752.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13720.2752.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)

HSP 1 Score: 400 bits (1027), Expect = 4.270e-126
Identity = 230/260 (88.46%), Postives = 233/260 (89.62%), Query Frame = 1 
Query:    1 EGLLDPPPRPAPPRPIAAIDFREFFLGFDKKWMAGGVALACGAGSVSIRDLSESNGXXXXXXXXXXXXXXXXXXXXXXDENAKGGE-----FSWSAKEEDGVELVSPLVSRGGVGCGGRESRHPGWGFGYNGPDPRVGFEPHVWYDMRMATDYKRCSVFLSDIRVVALARGLSGLKSFFFEPVQEFRERDRMLRPHRYVEVRPNNTDVEVVLANAYICLPESQWDCYAYADGGRGXXXXXPAVVAHADLTLTQQWRGMPQ 765
            EG LDPPP   PPRPIAAIDFREFFLGFDKKWMAGGVALACGAGS+SIRDLSES  XXXXXXXXXXXXXXXXXXXXXX             FSWSAKEEDGVELVSPLV RGG G GGRESRHPGWGFGYNGPDPRVGFEPHVWYDMRMATDYKRCSVFLSD+RVVALARGLSGLKSFF EPVQEFRERDRMLRPHRYVEVRPNNTDVEVVLANAYICLPESQWDCYA+A G   XXXXXPAVVAHADLTLTQQWRGMPQ
Sbjct: 1089 EGRLDPPPLRPPPRPIAAIDFREFFLGFDKKWMAGGVALACGAGSISIRDLSESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSWSAKEEDGVELVSPLVWRGG-GDGGRESRHPGWGFGYNGPDPRVGFEPHVWYDMRMATDYKRCSVFLSDVRVVALARGLSGLKSFFLEPVQEFRERDRMLRPHRYVEVRPNNTDVEVVLANAYICLPESQWDCYAHAGGXXXXXXXXPAVVAHADLTLTQQWRGMPQ 1347
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BLAST of mRNA_E-fasciculatus_F_contig13720.2752.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 5.860e-107
Identity = 188/258 (72.87%), Postives = 192/258 (74.42%), Query Frame = 1 
Query:    1 EGLLDPPPRPAPPRPIAAIDFREFFLGFDKKWMAGGVALACGAGSVSIRDLSESNGXXXXXXXXXXXXXXXXXXXXXXDENAKG---GEFSWSAKEEDGVELVSPLVSRGGVGCGGRESRHPGWGFGYNGPDPRVGFEPHVWYDMRMATDYKRCSVFLSDIRVVALARGLSGLKSFFFEPVQEFRERDRMLRPHRYVEVRPNNTDVEVVLANAYICLPESQWDCYAYADGGRGXXXXXPAVVAHADLTLTQQWRGMPQ 765
            EGLLDPP RP PPR IAAID REFFLGFDKKWMAGGVALACGAGS+SIRDLSES+G                      D NAKG   G FSW                            HPGWGFGYNGPDPRVGFEPHVWYDMRMATDYKRCSVFLSD+RVVALARGLSGLKSFF EPVQEFRERDRMLRPHRYVEVRPNNTDVEVVL NAYICLPESQWDCYA+A     XXXXXPAVVAHADLTLTQQWRGMPQ
Sbjct: 2167 EGLLDPPLRP-PPRQIAAIDLREFFLGFDKKWMAGGVALACGAGSISIRDLSESDGGGVAAAAGEDLPGEDK------DNNAKGDGGGGFSW----------------------------HPGWGFGYNGPDPRVGFEPHVWYDMRMATDYKRCSVFLSDVRVVALARGLSGLKSFFLEPVQEFRERDRMLRPHRYVEVRPNNTDVEVVLVNAYICLPESQWDCYAHAGXXXXXXXXXPAVVAHADLTLTQQWRGMPQ 2389
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BLAST of mRNA_E-fasciculatus_F_contig13720.2752.1 vs. uniprot
Match: A0A7R9Y9W6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9W6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.030e-7
Identity = 37/118 (31.36%), Postives = 56/118 (47.46%), Query Frame = 1 
Query:  412 VWYDMRMATDYKRCSVFLSDIRVVALARGLSGLKSFFFEPVQEFRERD-RMLRPHRYVEVRP--NNTDVEVVLANAYICLPESQWDCYAYADGGRGXXXXXPAVVAHADLTLTQQWRG 756
            V YD     D+ RCS+F+SD  +   +R L+ +  FF +P+ E   R+ R  +        P   N DVEVVL N+++ +PE      A ++G         A++  AD      WRG
Sbjct: 1230 VVYDQAATADFMRCSIFVSDTLLNVRSRTLARVTEFFTKPIDEVYHRNLRKWKAFGMAAPFPPKTNRDVEVVLTNSFVAVPEEIQTWLAMSNGAPPDPNLVRALMLRADAQYVHSWRG 1347
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13720.2752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LME4_ECTSI4.270e-12688.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K463_9PHAE5.860e-10772.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9Y9W6_9STRA3.030e-731.36Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13720contigE-fasciculatus_F_contig13720:581..1808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_002460.2
Hectar predicted targeting categoryother localisation
Exons2
Model size765
Cds size765
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927866.3881192-CDS-E-fasciculatus_F_contig13720:580..7701622927866.3881192-CDS-E-fasciculatus_F_contig13720:580..770Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13720 581..770 -
1695995730.0758777-CDS-E-fasciculatus_F_contig13720:580..7701695995730.0758777-CDS-E-fasciculatus_F_contig13720:580..770Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13720 581..770 -
1622927866.4085727-CDS-E-fasciculatus_F_contig13720:1233..18081622927866.4085727-CDS-E-fasciculatus_F_contig13720:1233..1808Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13720 1234..1808 -
1695995730.0854921-CDS-E-fasciculatus_F_contig13720:1233..18081695995730.0854921-CDS-E-fasciculatus_F_contig13720:1233..1808Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13720 1234..1808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13720.2752.1prot_E-fasciculatus_F_contig13720.2752.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13720 581..1808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13720.2752.1

>prot_E-fasciculatus_F_contig13720.2752.1 ID=prot_E-fasciculatus_F_contig13720.2752.1|Name=mRNA_E-fasciculatus_F_contig13720.2752.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=255bp
EGLLDPPPRPAPPRPIAAIDFREFFLGFDKKWMAGGVALACGAGSVSIRD
LSESNGGGAAAAAAAGGGLPGGEEDEDEDENAKGGEFSWSAKEEDGVELV
SPLVSRGGVGCGGRESRHPGWGFGYNGPDPRVGFEPHVWYDMRMATDYKR
CSVFLSDIRVVALARGLSGLKSFFFEPVQEFRERDRMLRPHRYVEVRPNN
TDVEVVLANAYICLPESQWDCYAYADGGRGGGGGGPAVVAHADLTLTQQW
RGMPQ
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mRNA from alignment at E-fasciculatus_F_contig13720:581..1808-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13720.2752.1 ID=mRNA_E-fasciculatus_F_contig13720.2752.1|Name=mRNA_E-fasciculatus_F_contig13720.2752.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1228bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13720:581..1808- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGGGCTGCTCGACCCGCCCCCGCGGCCGGCCCCTCCCCGGCCGATCGC
GGCGATCGACTTCCGCGAGTTCTTCCTGGGTTTCGACAAGAAGTGGATGG
CCGGCGGGGTCGCCCTCGCCTGCGGCGCCGGGTCGGTCTCCATCCGGGAC
CTGAGTGAGAGCAACGGCGGCGGAGCGGCGGCGGCGGCGGCGGCGGGCGG
AGGTTTGCCCGGGGGAGAAGAAGACGAAGACGAAGACGAGAACGCCAAAG
GTGGCGAGTTCTCGTGGTCCGCGAAGGAAGAGGACGGGGTCGAGCTCGTC
AGCCCCCTGGTCTCGAGGGGGGGCGTGGGCTGCGGCGGACGGGAGTCGAG
GCACCCCGGGTGGGGGTTCGGGTACAACGGTCCGGACCCCAGGGTCGGCT
TCGAGCCGCACGTCTGGTACGACATGCGCATGGCGACGGACTACAAGCGG
TGCTCCGTCTTCCTGTCCGACATCCGGGTGGTCGCCCTCGCCAGAGGGCT
GTCGGGCCTGAAGAGCTTCTTCTTTGAACCGGTCCAGGAGTTCCGCGAGC
GAGACCGGATGCTCAGGCCCCACAGGTGTGTCGCCGTCCAATTGTTCTCC
GATATGGTACAGTATACAAACGGCGGCAGTTACTCTGGTACATTTTCGTG
GTTGTGGGATACCTGGAATGTGCTATAATATAACGTTGTTGTGGTTGTGG
AGCAACGGTTATGTCTTTCTGTGACCAGCAGTTTTCGTTAGTAGCCGAGC
CGGGAGGGCTGGCAGGCACGACTGGTACGTGAAAGGAGGATGAGTTTGTT
GTGGGTGGGGTAGAACGCGTGTAGCCTTCCTTGCCCTCTGTGCGCCTGGC
CTTTGCCGTTGGCCAGCATTGCTTTTAGGCGGCGTGCGGTAGATCGGTCT
TGCATCAGATGCTGTAGGGCGGGCGGGCGGGCTCTCCCCGCACGCTCTCT
CCTCTAGGTGATGACACACACTCGCACATCTCCACCAAAAAACGGCAACT
AATAACGCAATATATTCGCCACCACTACCCCCGAACAGATACGTGGAGGT
TCGGCCTAACAACACCGACGTGGAGGTGGTGCTGGCAAACGCGTACATCT
GCTTGCCGGAGTCGCAGTGGGATTGCTACGCCTATGCCGACGGCGGAAGG
GGCGGAGGTGGAGGGGGGCCCGCCGTAGTGGCCCACGCGGACTTGACACT
CACGCAGCAGTGGCGAGGCATGCCGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13720:581..1808-

>mRNA_E-fasciculatus_F_contig13720.2752.1 ID=mRNA_E-fasciculatus_F_contig13720.2752.1|Name=mRNA_E-fasciculatus_F_contig13720.2752.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1530bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13720:581..1808- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGGGCTGCTCGACCCGCCCCCGCGGCCGGCCCCTCCCCGGCCGATCGC
GGCGATCGACTTCCGCGAGTTCTTCCTGGGTTTCGACAAGAAGTGGATGG
CCGGCGGGGTCGCCCTCGCCTGCGGCGCCGGGTCGGTCTCCATCCGGGAC
CTGAGTGAGAGCAACGGCGGCGGAGCGGCGGCGGCGGCGGCGGCGGGCGG
AGGTTTGCCCGGGGGAGAAGAAGACGAAGACGAAGACGAGAACGCCAAAG
GTGGCGAGTTCTCGTGGTCCGCGAAGGAAGAGGACGGGGTCGAGCTCGTC
AGCCCCCTGGTCTCGAGGGGGGGCGTGGGCTGCGGCGGACGGGAGTCGAG
GCACCCCGGGTGGGGGTTCGGGTACAACGGTCCGGACCCCAGGGTCGGCT
TCGAGCCGCACGTCTGGTACGACATGCGCATGGCGACGGACTACAAGCGG
TGCTCCGTCTTCCTGTCCGACATCCGGGTGGTCGCCCTCGCCAGAGGGCT
GTCGGGCCTGAAGAGCTTCTTCTTTGAACCGGTCCAGGAGTTCCGCGAGC
GAGACCGGATGCTCAGGCCCCACAGGAGGGGCTGCTCGACCCGCCCCCGC
GGCCGGCCCCTCCCCGGCCGATCGCGGCGATCGACTTCCGCGAGTTCTTC
CTGGGTTTCGACAAGAAGTGGATGGCCGGCGGGGTCGCCCTCGCCTGCGG
CGCCGGGTCGGTCTCCATCCGGGACCTGAGTGAGAGCAACGGCGGCGGAG
CGGCGGCGGCGGCGGCGGCGGGCGGAGGTTTGCCCGGGGGAGAAGAAGAC
GAAGACGAAGACGAGAACGCCAAAGGTGGCGAGTTCTCGTGGTCCGCGAA
GGAAGAGGACGGGGTCGAGCTCGTCAGCCCCCTGGTCTCGAGGGGGGGCG
TGGGCTGCGGCGGACGGGAGTCGAGGCACCCCGGGTGGGGGTTCGGGTAC
AACGGTCCGGACCCCAGGGTCGGCTTCGAGCCGCACGTCTGGTACGACAT
GCGCATGGCGACGGACTACAAGCGGTGCTCCGTCTTCCTGTCCGACATCC
GGGTGGTCGCCCTCGCCAGAGGGCTGTCGGGCCTGAAGAGCTTCTTCTTT
GAACCGGTCCAGGAGTTCCGCGAGCGAGACCGGATGCTCAGGCCCCACAG
ATACGTGGAGGTTCGGCCTAACAACACCGACGTGGAGGTGGTGCTGGCAA
ACGCGTACATCTGCTTGCCGGAGTCGCAGTGGGATTGCTACGCCTATGCC
GACGGCGGAAGGGGCGGAGGTGGAGGGGGGCCCGCCGTAGTGGCCCACGC
GGACTTGACACTCACGCAGCAGTGGCGAGGCATGCCGCAGATACGTGGAG
GTTCGGCCTAACAACACCGACGTGGAGGTGGTGCTGGCAAACGCGTACAT
CTGCTTGCCGGAGTCGCAGTGGGATTGCTACGCCTATGCCGACGGCGGAA
GGGGCGGAGGTGGAGGGGGGCCCGCCGTAGTGGCCCACGCGGACTTGACA
CTCACGCAGCAGTGGCGAGGCATGCCGCAG
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