mRNA_E-fasciculatus_F_contig13717.2748.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13717.2748.1
Unique NamemRNA_E-fasciculatus_F_contig13717.2748.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13717.2748.1 vs. uniprot
Match: A0A6H5JEL6_9PHAE (TFIID_NTD2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.590e-22
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 QAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFNHGAE 132
            QAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMF+HGAE
Sbjct:  108 QAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAE 151
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BLAST of mRNA_E-fasciculatus_F_contig13717.2748.1 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 6.920e-21
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 QAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFNHGAE 132
            QAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMF+HGAE
Sbjct:  108 QAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAE 151
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BLAST of mRNA_E-fasciculatus_F_contig13717.2748.1 vs. uniprot
Match: A0A0L0DLT8_THETB (Transcription initiation factor TFIID subunit 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DLT8_THETB)

HSP 1 Score: 50.8 bits (120), Expect = 4.180e-6
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 QAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFNHGAE 132
            ++Y  L +++  S E YR EL A++FPVFVHCYL LV   H  E
Sbjct:   65 ESYARLKDWITTSLEAYRDELSAILFPVFVHCYLDLVSKEHAEE 108
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BLAST of mRNA_E-fasciculatus_F_contig13717.2748.1 vs. uniprot
Match: A0A7S3BLV1_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BLV1_9VIRI)

HSP 1 Score: 47.4 bits (111), Expect = 7.020e-5
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    7 YRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLV 111
            Y+ L E+V +S +LY+ ELE +++PVFVHCYL LV
Sbjct:   25 YKNLKEWVHSSLDLYKSELERILYPVFVHCYLDLV 59
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BLAST of mRNA_E-fasciculatus_F_contig13717.2748.1 vs. uniprot
Match: H9JWX2_BOMMO (TFIID_NTD2 domain-containing protein n=3 Tax=Bombyx TaxID=7090 RepID=H9JWX2_BOMMO)

HSP 1 Score: 47.0 bits (110), Expect = 9.610e-5
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    4 AYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFNH 123
            AY GL +F+  S +LY+ EL  +++PVFVH YL L++++H
Sbjct:  142 AYDGLKKFIENSLDLYKYELSTLLYPVFVHMYLLLILYDH 181
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13717.2748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JEL6_9PHAE3.590e-2297.73TFIID_NTD2 domain-containing protein (Fragment) n=... [more]
D7FXT3_ECTSI6.920e-2197.73TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A0L0DLT8_THETB4.180e-650.00Transcription initiation factor TFIID subunit 5 n=... [more]
A0A7S3BLV1_9VIRI7.020e-557.14Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
H9JWX2_BOMMO9.610e-547.50TFIID_NTD2 domain-containing protein n=3 Tax=Bomby... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13717contigE-fasciculatus_F_contig13717:1..132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog2880.D7FXT3
KEGG koko:K03130
KEGG Pathwayko03022,ko05168,map03022,map05168
GOsGO:0000003,GO:0000280,GO:0000428,GO:0001673,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044798,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0051321,GO:0051704,GO:0055029,GO:0060255,GO:0061695,GO:0061982,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090575,GO:0097659,GO:0140013,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc.transcription initiation from RNA polymerase II promoter
EggNOG OGsCOG2319@1,KOG0263@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927865.7074819-CDS-E-fasciculatus_F_contig13717:0..1321622927865.7074819-CDS-E-fasciculatus_F_contig13717:0..132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13717 1..132 -
1695995729.737379-CDS-E-fasciculatus_F_contig13717:0..1321695995729.737379-CDS-E-fasciculatus_F_contig13717:0..132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13717 1..132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13717.2748.1prot_E-fasciculatus_F_contig13717.2748.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13717 1..132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13717.2748.1

>prot_E-fasciculatus_F_contig13717.2748.1 ID=prot_E-fasciculatus_F_contig13717.2748.1|Name=mRNA_E-fasciculatus_F_contig13717.2748.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=44bp
QAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFNHGAE
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mRNA from alignment at E-fasciculatus_F_contig13717:1..132-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13717.2748.1 ID=mRNA_E-fasciculatus_F_contig13717.2748.1|Name=mRNA_E-fasciculatus_F_contig13717.2748.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=132bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13717:1..132- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAAGCGTACCGGGGCCTGAGCGAGTTCGTGGCGGCGTCGTGGGAGCTTTA
CAGGCCGGAGCTGGAGGCGGTCATGTTTCCCGTGTTCGTGCACTGCTACC
TCACGCTCGTCATGTTCAATCATGGAGCTGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13717:1..132-

>mRNA_E-fasciculatus_F_contig13717.2748.1 ID=mRNA_E-fasciculatus_F_contig13717.2748.1|Name=mRNA_E-fasciculatus_F_contig13717.2748.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=264bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13717:1..132- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAAGCGTACCGGGGCCTGAGCGAGTTCGTGGCGGCGTCGTGGGAGCTTTA
CAGGCCGGAGCTGGAGGCGGTCATGTTTCCCGTGTTCGTGCACTGCTACC
TCACGCTCGTCATGTTCAATCATGGAGCTGAGCAAGCGTACCGGGGCCTG
AGCGAGTTCGTGGCGGCGTCGTGGGAGCTTTACAGGCCGGAGCTGGAGGC
GGTCATGTTTCCCGTGTTCGTGCACTGCTACCTCACGCTCGTCATGTTCA
ATCATGGAGCTGAG
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