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Homology
BLAST of mRNA_E-fasciculatus_F_contig13714.2747.1 vs. uniprot
Match: D8LBX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX6_ECTSI) HSP 1 Score: 319 bits (818), Expect = 6.520e-105 Identity = 196/225 (87.11%), Postives = 205/225 (91.11%), Query Frame = 1
Query: 22 LPARGVEFRFDVSLTASEMGCASGSRTAFEIVTALTKRTMLQLGRVMLSEARRALFNRESVVEILVNSLIHKDGGSAAAXXXXXXXXXXRVEKGQEGVGAPGEGGGEGQLRHVGGXXXGRSGVTLVGVLAKGVATIAERKRVSEVLTVLKHALFKAITINAGGDDPDEGNKGLAALLANTEVDRAGSGLSGKTTSLTSSSSASNLAGVSSE----GWEDAGKLSS 684
LPARGVEFRFDVSLTASEMGCASGSRTA EIVTALTKRTMLQLGRV+LSEARRALFNRESVVEILVNS+IHKDGGSAA XXXXXXXXXXRVEKGQ+GVGAPGEGGGEG LR VG RSGVTLVGVLAKGVATIAERKRV+EVLTVLKHALFKAITINAGGDDPDEGNKGLAALLANTEVDR GSGL+ KT SLTSSSSASNLAG+S+ G E+ GK+ S
Sbjct: 119 LPARGVEFRFDVSLTASEMGCASGSRTALEIVTALTKRTMLQLGRVVLSEARRALFNRESVVEILVNSIIHKDGGSAAXXXXXXXXXXXRVEKGQDGVGAPGEGGGEGGLRRVGDGEGRRSGVTLVGVLAKGVATIAERKRVAEVLTVLKHALFKAITINAGGDDPDEGNKGLAALLANTEVDR-GSGLARKT-SLTSSSSASNLAGISNSTGEGGCEETGKVGS 341
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-20_003650.1 |
| Exons | 4 |
| Model size | 813 |
| Cds size | 813 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13714.2747.1 >prot_E-fasciculatus_F_contig13714.2747.1 ID=prot_E-fasciculatus_F_contig13714.2747.1|Name=mRNA_E-fasciculatus_F_contig13714.2747.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=271bp
SSQQQQQLPARGVEFRFDVSLTASEMGCASGSRTAFEIVTALTKRTMLQL
GRVMLSEARRALFNRESVVEILVNSLIHKDGGSAAAAVATAAAATARVEK
GQEGVGAPGEGGGEGQLRHVGGGGGGRSGVTLVGVLAKGVATIAERKRVS
EVLTVLKHALFKAITINAGGDDPDEGNKGLAALLANTEVDRAGSGLSGKT
TSLTSSSSASNLAGVSSEGWEDAGKLSSSGGGGGGVAVASTTATASSSGN
ADPNSSSGGGRRPRRRWSGSG back to topmRNA from alignment at E-fasciculatus_F_contig13714:6..3107- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig13714.2747.1 ID=mRNA_E-fasciculatus_F_contig13714.2747.1|Name=mRNA_E-fasciculatus_F_contig13714.2747.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3102bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13714:6..3107- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGTCACAACAACAACAACAGCTGCCCGCCCGTGGGGTGGAGTTCCGGTT
CGACGTGAGTCTCACCGCGTCGGAGATGGGGTGTGCCTCGGGCTCGAGGA
CGGCGTTCGAGATCGTCACCGCCCTCACGAAGCGGACCATGCTCCAGCTT
GGTCGGTGAGACTGCGCGCGAACGGTTGCGGGTTCTAGTACCTTTTTTTG
TCCGTCACCGTAGTCTTGGGGCGGGGGTTCTAGTCTGTTTTCGCCTGTCG
CCATGGTGGTCTTGATGGACCACGTTGAGAGATGAAGCAACATTCTTCGC
GCCTCACGCCTGTGTGTGTCTCCTCTCTGTTCCTGGTGAATACAACACAT
CAGGCAGGTTGGCGACGTTTGAAATGCCCGTTGCGAGGGTGGGGCGGGGG
ATCCGTGTGTCCGCGTCCGTCCCATCCAAACGTTCACTATCACGTGTCTT
GTACTATCTCGCAAGCTGTCTCTCTCTCAAGCTGCAACAACCAAGCGCCC
TACGCTGGAGTACGACTTTGCTCTATGCCCATCTTACGCTTTTTCGTATC
GTCCACGGCTCCAGTCCCCTCCCCCGCCCCTCTAGAGACATCTCCTGTGT
AGCTCTCTCTCTCCCTCTCTCTCTCTCGCTCTTGTTTACCTCGCTCTCTC
TATTTTGCTTACCTCCCTCGCCTTCCTTAACCGTGCCAATCTACCCCCCT
ATAGAGTAATGCTATCAGAGGCCAGGAGAGCCCTGTTCAACCGCGAGAGC
GTTGTCGAGATCTTGGTCAATTCCCTCATCCACAAGGACGGCGGCTCCGC
GGCGGCGGCGGTGGCAACAGCGGCGGCGGCTACGGCAAGGGTAGAGAAGG
GTCAAGAAGGAGTAGGGGCTCCGGGGGAGGGGGGGGGCGAGGGGCAACTG
AGGCATGTTGGCGGCGGCGGCGGGGGGCGGTCGGGCGTGACGCTCGTCGG
AGTGGTGAGAAGATCTTTGCTTGCCGTTAATATTTAGCCGGTTTGGAGAC
GAGAGCTCTGTTTACGCGACAAACATGTAACGCAAGGTGGCAAGCAAGCA
CCCCACGTTTCGTATAGAGGGGCCGACCGATCCAGAGGCCCATCAAAAAT
AATATTAAAAAAGAGCGACGCTTGAACCGAAATCACGCCTGGGAGTTGGC
GTACCTCTTTCAGCCTCGTCCCCTGTGAGAGTGAACTCTTCCCCAATAGG
GCAGGAGTCTCAAAGAGGGATGTCAACTTCCCAGACGTGATGTCGGTTCA
AGCGTCGCTCTTTTTTTAATATCATTCTTGATGGACCTCTGGATCGGTTG
GCCCCTCCGCGGAATGTGGTCCCGCGAAATCACGCAAGGCTGCCATACCG
TACCACACAACCTGGAGCATGCGAGTATTCAGGGTGCCAGCCAATTTGGA
GATATTGATAGCTCATTTTACACTACAATAATTAACAAGGCAGCCGAGCA
CCACATTTCATGGAGGGGCGGACCGATCCAGGCCTATCGAGAACGACACC
CGCACGAGAGACTCTCGCACCGAACGGCGCTTGGGAAGTTGACAATACCT
TTGTGCTCTTTGAAGCGATCGAAACAACCACGATGCACACACGTGCCAAG
CTGCCAAAGTTAGAGTTGTGTGTGAGTTTGTGTTGAGTATGTGTCAATAG
TGTTTTCTTTGTGGTGCTGGTGTTTGTTGATGCTGCTGTTGTCGTTGTCG
TCGACATACCTCTGAAGGATCTGTCCTTCAACCTCGATGGAGCTACTAGT
ATAGTACAAGGGCTCGTCTCTCTCCACCTCCCCCCTTCCCTAGCCTCCCT
TCCCGGTCCAAAACTCCAGTCATCATCCTCGAGAAGGGCCTATTTTTTGT
CACGATGCCTTGCCCCCCCCGAACACTACTTATGCCAATCATCGCCCCCA
CGCATTGCTGCTACGGCTGCTGCTCGTGTTCCTCGGCAACGTTGATGCGC
CCCGCCCCGTGAACGAAAAAATAACGCTGCGCAACTTTTTTGTGAAGCTG
GCGAAGGGGGTGGCCACTATCGCGGAGAGGAAACGGGTGTCCGAGGTGCT
GACGGTCCTGAAGCACGCGCTGTTTAAGGCTATCACGATCAACGCCGGGG
GCGACGACCCCGACGAGGGGAACAAGGTTCGTTGGCTCGTGACTCCGACA
CGCCGCCGCGGTGATGGTGGCACGAAAGGGAAGCGGTGGATGGATTGCAC
GATGTGAATCAATTAGGGTGTTCCTTGCAAGGGTCAACCATCCGTGCCCG
TGTCTCGTGTTTCTTTGCAAGCATCCCGCCTGAAGTAGTTCTCGAAGGAT
GTTTTTTTTCTAGCAAAGGTTCTGACTGCCTTAGAACCCATCATATTCTC
AGCACGAAGCCTTAAGTAGTCGTGGTCCAGATAATTTTAACAGGTGTATC
ATGTACGTGTCGCCCAGCAGCGCACTCTAAGCAACCTCCCTCGAAGCTGT
GGCAGGTGTATCAGATCTAGGCGGATTGAGAACAAGGCGACAGGAAAACA
AACCCACTTAATACGAACAATATAGACCCACTTGATGCGAACAACCAGAC
TCACACAATGCGAATATATAGACCCCGATCTCAGGGCCGCTCGTTTCGCC
TTGCTCCCGCTACATAGGGTTCTGTTTCCCGTGCCTTTTCGCTCCGCTGT
TGTTGATTTTGGTGGTGATGGCGGCGATGTTGTTTTCTTGCGGCGGACTG
TTGGTGCGGCTGTTGTCCCTTTCCGTAACGTCACTACACCTTTTTGATTG
GTGTGGTCTAGTTTTTTTCAATACGTTGGCGAACTAGAACTTGTTTATTG
TTTGCTCGTGTCCGCCGTAACAGGGACTGGCGGCCCTCCTGGCCAACACG
GAGGTAGACCGCGCCGGCTCCGGCTTGTCAGGAAAAACTACTTCCCTCAC
CTCTTCCTCTTCGGCGAGCAACCTTGCCGGGGTTTCGAGCGAGGGTTGGG
AAGACGCCGGAAAACTCAGCAGCAGCGGCGGCGGCGGCGGCGGCGTGGCG
GTGGCGTCGACAACAGCAACGGCATCTTCCTCCGGAAACGCCGATCCCAA
CAGTAGTAGCGGGGGGGGGCGCCGCCCTCGTCGCCGATGGAGCGGGAGCG
GG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig13714:6..3107- >mRNA_E-fasciculatus_F_contig13714.2747.1 ID=mRNA_E-fasciculatus_F_contig13714.2747.1|Name=mRNA_E-fasciculatus_F_contig13714.2747.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1626bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13714:6..3107- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGTCACAACAACAACAACAGCTGCCCGCCCGTGGGGTGGAGTTCCGGTT
CGACGTGAGTCTCACCGCGTCGGAGATGGGGTGTGCCTCGGGCTCGAGGA
CGGCGTTCGAGATCGTCACCGCCCTCACGAAGCGGACCATGCTCCAGCTT
GGTCGTCGTCACAACAACAACAACAGCTGCCCGCCCGTGGGGTGGAGTTC
CGGTTCGACGTGAGTCTCACCGCGTCGGAGATGGGGTGTGCCTCGGGCTC
GAGGACGGCGTTCGAGATCGTCACCGCCCTCACGAAGCGGACCATGCTCC
AGCTTGGTCGAGTAATGCTATCAGAGGCCAGGAGAGCCCTGTTCAACCGC
GAGAGCGTTGTCGAGATCTTGGTCAATTCCCTCATCCACAAGGACGGCGG
CTCCGCGGCGGCGGCGGTGGCAACAGCGGCGGCGGCTACGGCAAGGGTAG
AGAAGGGTCAAGAAGGAGTAGGGGCTCCGGGGGAGGGGGGGGGCGAGGGG
CAACTGAGGCATGTTGGCGGCGGCGGCGGGGGGCGGTCGGGCGTGACGCT
CGTCGGAGTGAGTAATGCTATCAGAGGCCAGGAGAGCCCTGTTCAACCGC
GAGAGCGTTGTCGAGATCTTGGTCAATTCCCTCATCCACAAGGACGGCGG
CTCCGCGGCGGCGGCGGTGGCAACAGCGGCGGCGGCTACGGCAAGGGTAG
AGAAGGGTCAAGAAGGAGTAGGGGCTCCGGGGGAGGGGGGGGGCGAGGGG
CAACTGAGGCATGTTGGCGGCGGCGGCGGGGGGCGGTCGGGCGTGACGCT
CGTCGGAGTGCTGGCGAAGGGGGTGGCCACTATCGCGGAGAGGAAACGGG
TGTCCGAGGTGCTGACGGTCCTGAAGCACGCGCTGTTTAAGGCTATCACG
ATCAACGCCGGGGGCGACGACCCCGACGAGGGGAACAAGCTGGCGAAGGG
GGTGGCCACTATCGCGGAGAGGAAACGGGTGTCCGAGGTGCTGACGGTCC
TGAAGCACGCGCTGTTTAAGGCTATCACGATCAACGCCGGGGGCGACGAC
CCCGACGAGGGGAACAAGGGACTGGCGGCCCTCCTGGCCAACACGGAGGT
AGACCGCGCCGGCTCCGGCTTGTCAGGAAAAACTACTTCCCTCACCTCTT
CCTCTTCGGCGAGCAACCTTGCCGGGGTTTCGAGCGAGGGTTGGGAAGAC
GCCGGAAAACTCAGCAGCAGCGGCGGCGGCGGCGGCGGCGTGGCGGTGGC
GTCGACAACAGCAACGGCATCTTCCTCCGGAAACGCCGATCCCAACAGTA
GTAGCGGGGGGGGGCGCCGCCCTCGTCGCCGATGGAGCGGGAGCGGGGGA
CTGGCGGCCCTCCTGGCCAACACGGAGGTAGACCGCGCCGGCTCCGGCTT
GTCAGGAAAAACTACTTCCCTCACCTCTTCCTCTTCGGCGAGCAACCTTG
CCGGGGTTTCGAGCGAGGGTTGGGAAGACGCCGGAAAACTCAGCAGCAGC
GGCGGCGGCGGCGGCGGCGTGGCGGTGGCGTCGACAACAGCAACGGCATC
TTCCTCCGGAAACGCCGATCCCAACAGTAGTAGCGGGGGGGGGCGCCGCC
CTCGTCGCCGATGGAGCGGGAGCGGG back to top
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