mRNA_E-fasciculatus_F_contig13712.2746.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13712.2746.1
Unique NamemRNA_E-fasciculatus_F_contig13712.2746.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: D7FLF2_ECTSI (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF2_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 6.310e-24
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 ISQFVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKKLVGA 165
            +  FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLK+LVGA
Sbjct:  376 VISFVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKELVGA 430          
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A6V1P662_HETAK (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P662_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 4.820e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1
Query:   10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKK 153
            F+DIP+VIE  MEAHKAD    P+++DI+ VD+WAR +VD AAA LKK
Sbjct:  405 FLDIPKVIEAAMEAHKADFKTNPTLDDILAVDIWAREQVDVAAANLKK 452          
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A835ZCZ6_9STRA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCZ6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.240e-9
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 ISQFVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQL 147
            +  ++DIPRVIE  MEAHK DL   P ++DIV+VD WAR  VD+AA +L
Sbjct:  375 VISYLDIPRVIEAAMEAHKKDLNMAPRLDDIVSVDAWARTCVDDAARKL 423          
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: B2KJ88_PRYPA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Prymnesium parvum TaxID=97485 RepID=B2KJ88_PRYPA)

HSP 1 Score: 59.7 bits (143), Expect = 5.260e-9
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKK 153
            F  IP+VIE  MEAHKAD  A PS+EDI+ +D WAR +V E AA+L+K
Sbjct:  413 FFGIPKVIEQTMEAHKADFKADPSLEDILEIDSWARRQVVEEAARLEK 460          
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A4P7ZT75_9SYNE (1-deoxy-D-xylulose 5-phosphate reductoisomerase n=8 Tax=Cyanobacteria TaxID=1117 RepID=A0A4P7ZT75_9SYNE)

HSP 1 Score: 59.3 bits (142), Expect = 7.150e-9
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1
Query:   10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLK 150
            F+DIPR+I+VV + HKADL A PS++D++ VD W+R  V EAAA+L+
Sbjct:  361 FLDIPRLIDVVCDRHKADLTANPSLDDVLAVDAWSRQAVREAAARLQ 407          
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A7S3ZRW4_9STRA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRW4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.840e-8
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    7 QFVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKKL 156
            +++DIPRVIE  MEAHKAD +  PS+++I+ VDLWAR  V + A+  K++
Sbjct:  431 EYLDIPRVIEAAMEAHKADFIQEPSLDEIIEVDLWARRFVKDFASAKKEV 480          
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A0J6B6U1_9SYNE (1-deoxy-D-xylulose 5-phosphate reductoisomerase n=4 Tax=Synechococcales TaxID=1890424 RepID=A0A0J6B6U1_9SYNE)

HSP 1 Score: 57.8 bits (138), Expect = 2.500e-8
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQL 147
            F+DIP +IE+V + H+ADLMA PS+ D++ VD WAR  V EAAA+L
Sbjct:  361 FLDIPLLIELVCDRHRADLMANPSLSDVLAVDAWARQAVREAAARL 406          
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A7S0YVI8_9CRYP (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YVI8_9CRYP)

HSP 1 Score: 56.6 bits (135), Expect = 6.440e-8
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKKLVGA 165
            F+DI +VIE  MEAHK DL  +PS+ DIV VD WAR K  E A   KK + A
Sbjct:  439 FMDIFKVIEATMEAHKGDLSMSPSLADIVQVDEWARSKTAEVAGAGKKTIPA 490          
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A7S0U527_HEMAN (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U527_HEMAN)

HSP 1 Score: 54.7 bits (130), Expect = 3.080e-7
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQ 144
            F+DI +VIE  MEAHK DL  TPS++DIV VD WAR K  E A +
Sbjct:  443 FMDIFKVIEATMEAHKGDLSMTPSLDDIVKVDEWARKKTLEVAGK 487          
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A316JLB9_9SYNE (1-deoxy-D-xylulose 5-phosphate reductoisomerase n=5 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A316JLB9_9SYNE)

HSP 1 Score: 54.3 bits (129), Expect = 4.190e-7
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAA 141
            F+DIP++I+ V + HKADLMA PS++D++ VD W+R  V EAAA
Sbjct:  361 FLDIPKLIDRVCDRHKADLMAHPSLDDVLAVDSWSRQAVREAAA 404          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF2_ECTSI6.310e-2492.731-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A6V1P662_HETAK4.820e-1162.501-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A835ZCZ6_9STRA5.240e-957.141-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
B2KJ88_PRYPA5.260e-960.421-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A4P7ZT75_9SYNE7.150e-957.451-deoxy-D-xylulose 5-phosphate reductoisomerase n=... [more]
A0A7S3ZRW4_9STRA1.840e-852.001-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A0J6B6U1_9SYNE2.500e-858.701-deoxy-D-xylulose 5-phosphate reductoisomerase n=... [more]
A0A7S0YVI8_9CRYP6.440e-855.771-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A7S0U527_HEMAN3.080e-760.001-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A316JLB9_9SYNE4.190e-756.821-deoxy-D-xylulose 5-phosphate reductoisomerase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13712contigE-fasciculatus_F_contig13712:241..729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.2e-19
Seed eggNOG ortholog2880.D7FLF2
Preferred nameDXR
KEGG rclassRC01452
KEGG koko:K00099
KEGG ReactionR05688
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576
EggNOG free text desc.1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
EggNOG OGs2QPJ7@2759,COG0020@1
EC1.1.1.267
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog description1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor
Ec32 orthologEc-12_007940.1
Exons2
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927865.5717115-CDS-E-fasciculatus_F_contig13712:240..3391622927865.5717115-CDS-E-fasciculatus_F_contig13712:240..339Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13712 241..339 +
1695995729.6681314-CDS-E-fasciculatus_F_contig13712:240..3391695995729.6681314-CDS-E-fasciculatus_F_contig13712:240..339Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13712 241..339 +
1622927865.5847719-CDS-E-fasciculatus_F_contig13712:660..7291622927865.5847719-CDS-E-fasciculatus_F_contig13712:660..729Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13712 661..729 +
1695995729.6829329-CDS-E-fasciculatus_F_contig13712:660..7291695995729.6829329-CDS-E-fasciculatus_F_contig13712:660..729Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13712 661..729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13712.2746.1prot_E-fasciculatus_F_contig13712.2746.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13712 241..729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13712.2746.1

>prot_E-fasciculatus_F_contig13712.2746.1 ID=prot_E-fasciculatus_F_contig13712.2746.1|Name=mRNA_E-fasciculatus_F_contig13712.2746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=56bp
ISQFVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLK
KLVGA*
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mRNA from alignment at E-fasciculatus_F_contig13712:241..729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13712.2746.1 ID=mRNA_E-fasciculatus_F_contig13712.2746.1|Name=mRNA_E-fasciculatus_F_contig13712.2746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=489bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13712:241..729+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTTCGCAGTTCGTGGATATTCCACGAGTGATCGAGGTTGTAATGGAAGC TCATAAGGCAGACCTCATGGCAACACCGTCCATCGAAGACATTGTCAACG TGAGTTGGGGCGTCGATGGTCCCCATCATACATGATCCAGTGGTTCGATA GCGTGCGTCCGGGTGTTTCGTAGTGGCGCGCAGGTCGCCGGTGTGAGTTG TACCAGCGTCTGTGTCAGTGTGAGTCTTCCATGCAATGCCTGCGTAGCTG CGGACGTACACCATGCGTTGGTTTGGTTGGCCCGCTGTTGACGCAAGGAA ATGTTTAAGCATTGCTGTTGCAGGCTATAGGGCACTTACTGTAACCATCG TTCACTGCGATAAACTATTTACGAGTGGTCTCAGTCCAAACGGTGGATGC TCGTGTGCGATTACTGCCAGGTGGATCTGTGGGCAAGAGGCAAGGTGGAC GAAGCCGCTGCACAGCTCAAGAAGCTGGTTGGAGCGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13712:241..729+

>mRNA_E-fasciculatus_F_contig13712.2746.1 ID=mRNA_E-fasciculatus_F_contig13712.2746.1|Name=mRNA_E-fasciculatus_F_contig13712.2746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=336bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13712:241..729+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTTCGCAGTTCGTGGATATTCCACGAGTGATCGAGGTTGTAATGGAAGC
TCATAAGGCAGACCTCATGGCAACACCGTCCATCGAAGACATTGTCAACA
TTTCGCAGTTCGTGGATATTCCACGAGTGATCGAGGTTGTAATGGAAGCT
CATAAGGCAGACCTCATGGCAACACCGTCCATCGAAGACATTGTCAACGT
GGATCTGTGGGCAAGAGGCAAGGTGGACGAAGCCGCTGCACAGCTCAAGA
AGCTGGTTGGAGCGTAGGTGGATCTGTGGGCAAGAGGCAAGGTGGACGAA
GCCGCTGCACAGCTCAAGAAGCTGGTTGGAGCGTAG
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