mRNA_E-fasciculatus_F_contig13712.2746.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: D7FLF2_ECTSI (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF2_ECTSI) HSP 1 Score: 101 bits (251), Expect = 6.310e-24 Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query: 1 ISQFVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKKLVGA 165
+ FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLK+LVGA
Sbjct: 376 VISFVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKELVGA 430
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A6V1P662_HETAK (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P662_HETAK) HSP 1 Score: 65.5 bits (158), Expect = 4.820e-11 Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1
Query: 10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKK 153
F+DIP+VIE MEAHKAD P+++DI+ VD+WAR +VD AAA LKK
Sbjct: 405 FLDIPKVIEAAMEAHKADFKTNPTLDDILAVDIWAREQVDVAAANLKK 452
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A835ZCZ6_9STRA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCZ6_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 5.240e-9 Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 1 ISQFVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQL 147
+ ++DIPRVIE MEAHK DL P ++DIV+VD WAR VD+AA +L
Sbjct: 375 VISYLDIPRVIEAAMEAHKKDLNMAPRLDDIVSVDAWARTCVDDAARKL 423
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: B2KJ88_PRYPA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Prymnesium parvum TaxID=97485 RepID=B2KJ88_PRYPA) HSP 1 Score: 59.7 bits (143), Expect = 5.260e-9 Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1
Query: 10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKK 153
F IP+VIE MEAHKAD A PS+EDI+ +D WAR +V E AA+L+K
Sbjct: 413 FFGIPKVIEQTMEAHKADFKADPSLEDILEIDSWARRQVVEEAARLEK 460
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A4P7ZT75_9SYNE (1-deoxy-D-xylulose 5-phosphate reductoisomerase n=8 Tax=Cyanobacteria TaxID=1117 RepID=A0A4P7ZT75_9SYNE) HSP 1 Score: 59.3 bits (142), Expect = 7.150e-9 Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1
Query: 10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLK 150
F+DIPR+I+VV + HKADL A PS++D++ VD W+R V EAAA+L+
Sbjct: 361 FLDIPRLIDVVCDRHKADLTANPSLDDVLAVDAWSRQAVREAAARLQ 407
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A7S3ZRW4_9STRA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRW4_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 1.840e-8 Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 7 QFVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKKL 156
+++DIPRVIE MEAHKAD + PS+++I+ VDLWAR V + A+ K++
Sbjct: 431 EYLDIPRVIEAAMEAHKADFIQEPSLDEIIEVDLWARRFVKDFASAKKEV 480
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A0J6B6U1_9SYNE (1-deoxy-D-xylulose 5-phosphate reductoisomerase n=4 Tax=Synechococcales TaxID=1890424 RepID=A0A0J6B6U1_9SYNE) HSP 1 Score: 57.8 bits (138), Expect = 2.500e-8 Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQL 147
F+DIP +IE+V + H+ADLMA PS+ D++ VD WAR V EAAA+L
Sbjct: 361 FLDIPLLIELVCDRHRADLMANPSLSDVLAVDAWARQAVREAAARL 406
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A7S0YVI8_9CRYP (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YVI8_9CRYP) HSP 1 Score: 56.6 bits (135), Expect = 6.440e-8 Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 1
Query: 10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKKLVGA 165
F+DI +VIE MEAHK DL +PS+ DIV VD WAR K E A KK + A
Sbjct: 439 FMDIFKVIEATMEAHKGDLSMSPSLADIVQVDEWARSKTAEVAGAGKKTIPA 490
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A7S0U527_HEMAN (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U527_HEMAN) HSP 1 Score: 54.7 bits (130), Expect = 3.080e-7 Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1
Query: 10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQ 144
F+DI +VIE MEAHK DL TPS++DIV VD WAR K E A +
Sbjct: 443 FMDIFKVIEATMEAHKGDLSMTPSLDDIVKVDEWARKKTLEVAGK 487
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Match: A0A316JLB9_9SYNE (1-deoxy-D-xylulose 5-phosphate reductoisomerase n=5 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A316JLB9_9SYNE) HSP 1 Score: 54.3 bits (129), Expect = 4.190e-7 Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 1
Query: 10 FVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAA 141
F+DIP++I+ V + HKADLMA PS++D++ VD W+R V EAAA
Sbjct: 361 FLDIPKLIDRVCDRHKADLMAHPSLDDVLAVDSWSRQAVREAAA 404 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13712.2746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13712.2746.1 >prot_E-fasciculatus_F_contig13712.2746.1 ID=prot_E-fasciculatus_F_contig13712.2746.1|Name=mRNA_E-fasciculatus_F_contig13712.2746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=56bp ISQFVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLKback to top mRNA from alignment at E-fasciculatus_F_contig13712:241..729+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13712.2746.1 ID=mRNA_E-fasciculatus_F_contig13712.2746.1|Name=mRNA_E-fasciculatus_F_contig13712.2746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=489bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13712:241..729+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13712:241..729+ >mRNA_E-fasciculatus_F_contig13712.2746.1 ID=mRNA_E-fasciculatus_F_contig13712.2746.1|Name=mRNA_E-fasciculatus_F_contig13712.2746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=336bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13712:241..729+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |