mRNA_E-fasciculatus_F_contig13691.2730.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13691.2730.1
Unique NamemRNA_E-fasciculatus_F_contig13691.2730.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13691.2730.1 vs. uniprot
Match: A0A6H5JMQ2_9PHAE (ORC3_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ2_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 4.320e-56
Identity = 150/288 (52.08%), Postives = 158/288 (54.86%), Query Frame = 1 
Query:    1 MRMADTVLGRAGRQAG---GAGAAFDVGRMRDRVVKLGSSVRIVGLLSASKKSKRYYAELKEVSQALAYLSPGEVKGLLRELLRALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPAAADADQLEEDGSGAIRSXXXXXXXXSATSRGLNDQTDDRPEVPVVELSPERSGSASPERFAERSGGKTACPAEISGKTVSPDPSSS---------------ERYPIQSPERSGGNSRDVPSSTAAPLVVQGLDQTEADYLRRGAGRVLRLWGTAQKGGWAE 810
            +RM D VLGR GRQ G   GAGA  DVGRMR R VKLGSSVRI+GLLSASKKS+RYYAELKEVS+ALAYL PGEVKGLL ELL ALP                                       AAADAD      SGAI          S T+      TD R        SPERSGS SPERFAE       CP EIS KT SP P+S                ER P  S E S GNSRD  SS  APLVV GLD+ EADYLRRGA RVL  WG A+K GWAE
Sbjct:  512 LRMTDAVLGRPGRQGGPREGAGAGLDVGRMRQRAVKLGSSVRILGLLSASKKSRRYYAELKEVSEALAYLLPGEVKGLLHELLCALPSADQSSASSAATDPRAT----------------------AAADADGE----SGAI----------SNTTGSDYALTDGR--------SPERSGSTSPERFAEXX--XXTCP-EISRKTTSPGPASERSPTRREISGKKASQERSPTLSQELSAGNSRDFCSSPTAPLVVHGLDRMEADYLRRGAERVLGQWGRAEKEGWAE 752
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BLAST of mRNA_E-fasciculatus_F_contig13691.2730.1 vs. uniprot
Match: D8LJC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC7_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 3.290e-51
Identity = 161/290 (55.52%), Postives = 170/290 (58.62%), Query Frame = 1 
Query:    1 MRMADTVLGRAGRQAGG----AGAAFDVGRMRDRVVKLGSSVRIVGLLSASKKSKRYYAELKEVSQALAYLSPGEVKGLLRELLRALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPAAADADQLEEDGSGAIRSXXXXXXXXSATSRGLNDQTDDRPEVPVVELSPERSGSASPERFAERSGGKTACPAEISGKTVSPDPSSS----------------ERYPIQSPERSGGNSRDVPSSTAAPLVVQGLDQTEADYLRRGAGRVLRLWGTAQKGGWAE 810
            +RMAD VLGR GRQAGG    AGA  DVG MR R VKLGSSVRI+GLLSASKKS+RYYAELKEVS+ALAYL PGEVKGLLRELLRALP       XXXXXXXXXXXXXXXXXXX                         SGAI          SAT+   +  TDDR        SPE SGS SP               EIS KT SP PSS                 ER P  S ER   NSRD  SS  APLVVQGLD+TEADYLRRGA RVL  WG A++ GWAE
Sbjct:  511 LRMADAVLGRPGRQAGGTREGAGAGLDVGTMRQRAVKLGSSVRILGLLSASKKSRRYYAELKEVSEALAYLLPGEVKGLLRELLRALPSANQRAAXXXXXXXXXXXXXXXXXXX-------------------------SGAI----------SATTGSDDASTDDR--------SPELSGSTSPXXXXXX---XXXXXXEISLKTTSPGPSSEXXXXXXXXXXGKKSSQERPPTISQERPAENSRDFSSSPTAPLVVQGLDRTEADYLRRGAERVLGQWGRAEQEGWAE 754
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13691.2730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMQ2_9PHAE4.320e-5652.08ORC3_N domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LJC7_ECTSI3.290e-5155.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13691contigE-fasciculatus_F_contig13691:175..3260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size819
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13691.2730.1prot_E-fasciculatus_F_contig13691.2730.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13691 175..3260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927863.398072-CDS-E-fasciculatus_F_contig13691:174..8161622927863.398072-CDS-E-fasciculatus_F_contig13691:174..816Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13691 175..816 -
1695995728.5765684-CDS-E-fasciculatus_F_contig13691:174..8161695995728.5765684-CDS-E-fasciculatus_F_contig13691:174..816Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13691 175..816 -
1622927863.4093475-CDS-E-fasciculatus_F_contig13691:2296..24301622927863.4093475-CDS-E-fasciculatus_F_contig13691:2296..2430Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13691 2297..2430 -
1695995728.5873477-CDS-E-fasciculatus_F_contig13691:2296..24301695995728.5873477-CDS-E-fasciculatus_F_contig13691:2296..2430Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13691 2297..2430 -
1622927863.419349-CDS-E-fasciculatus_F_contig13691:3217..32601622927863.419349-CDS-E-fasciculatus_F_contig13691:3217..3260Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13691 3218..3260 -
1695995728.598921-CDS-E-fasciculatus_F_contig13691:3217..32601695995728.598921-CDS-E-fasciculatus_F_contig13691:3217..3260Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13691 3218..3260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13691.2730.1

>prot_E-fasciculatus_F_contig13691.2730.1 ID=prot_E-fasciculatus_F_contig13691.2730.1|Name=mRNA_E-fasciculatus_F_contig13691.2730.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=273bp
MRMADTVLGRAGRQAGGAGAAFDVGRMRDRVVKLGSSVRIVGLLSASKKS
KRYYAELKEVSQALAYLSPGEVKGLLRELLRALPPPATNHQRAAPAAAAA
AAAVTTTTDPTAASAAAAAAAGPAAADADQLEEDGSGAIRSGAIRSGAIS
ATSRGLNDQTDDRPEVPVVELSPERSGSASPERFAERSGGKTACPAEISG
KTVSPDPSSSERYPIQSPERSGGNSRDVPSSTAAPLVVQGLDQTEADYLR
RGAGRVLRLWGTAQKGGWAEVH*
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mRNA from alignment at E-fasciculatus_F_contig13691:175..3260-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13691.2730.1 ID=mRNA_E-fasciculatus_F_contig13691.2730.1|Name=mRNA_E-fasciculatus_F_contig13691.2730.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3086bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13691:175..3260- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGATGGCGGACACGGTTCTGGGACGGGCTGGCCGGCAAGGTGCGTA
GCACTCCCCACGTGTATTTTACGGCCCTCCGGGTGCTATCTGTACCGCAC
TGCTGGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGTTGCCATTCATCTTG
CCACAACGGTAAAGTAGTCACTCATTCCATCCACTCATTCCTTTCAAAGC
TACACACCGTACCGCCTGGATACAAAACTACCTCACCCTCCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGGTGGTGCTGCTGTTGCCATTCATCTTGCCACAACGGTACAGTAG
TCACTCATTCCATCCACTCATTCCTTTCAAAGCTACACCGTACCGCCTGG
ATACAAAACTACCTCACCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGTCCATCTTGCCACGGCCATTCAGTATAATACTCGCTTATTCCATCC
ACTGTCTGCTTTCAAACCCACACCGTACAGCCTGGATGAGTACCATGCTG
CCGCGGCTGCTGTTGCCATTCATCTTGCCAAAGCAGCCGTGGTCGCAATT
GATCCCTTTAAGATTCACACACCGTACCTCCTCGACAACTACCGTAGTAC
TGCTGCTTCCGCTGTTGCATGTGACGGTTCGATCGAAGCCGTTTGTTGAT
CGATCCGTTAATGTGACAGTTCGATCGAAACCGTTTGTGACGGTTCGATC
GAAACCGTTTGTGACGGTTCATCGAAACCGTTTAATTACGGTTCGATTAA
AACCGTTGTTCGATTGGACCGCTTCTTAAGCAGGAGGGGCGGGCGCCGCG
TTTGACGTCGGGAGGATGCGGGACCGCGTGGTTAAGCTCGGAAGCTCTGT
GCGCATCGTCGGGCTTCTTTCCGCTTCGAAGAAGTCCAAGCGCTACTACG
CGGAGCTCAAGGAGGTACGTTTTTTTTTTTTCTTTAGTATAACACAATCT
AGCCTTCAATTTCTTTTTTGAGTATCTCTATCAAAAGAAAAAAGGCTAGA
TTAGAAATGGACTCATACCGTCAGCGGAAGCTATTTATACCTGTATTTCT
ACAATTTCCCGAGCAGCATACGGCTTTGATTTGTTCGGGCAACTTCCCAA
GCTTGTTTCATTCGGCTGTGTATTGTCGGGCTGTTTTTGTTGTTGAAAGA
TGCCGATTCGTAAGGCTGCTGTCCTCTCCGCAGAAGACCAAGCGGTACTA
CGTGGAGTTAAAAGACGTACCGTGTATTGTTGACAATATCAAGCACCTAC
TTCGTTTCACGGCACATTTTTTTTTTTGTTTCCTCCCATCATTGGACTCT
GTCGTCTGCCCCTCTGGCCCCTATCCTCCACTTCTACTAATCGCTAGACG
ACCCAACCGGGGTCACATAAAAGCGGGGGGCTGGACCCCCTCCTGCGGTT
CCTGCCTGAGATATTTTCATCCCGAGAAGGAGCACGAACCCCGATTGAGT
AATTTTCTGCCTGTTCTACACGCTAAACGTTGGACAATGCAAACCGAGTT
CGCTGCGAAAGCAGCAGAAGGTGCTGGACCCCACAAAGCAGGTCTAACGA
CTACGGTGTGCGTTCACAGGAGTACCGCTTCCCTCCCCTTGTCTCTCTCC
CTCGTGGGATTGATCTCCCACAGGTGTCGCAGGCCAATTCTGCGCGAAAA
CCTGCTCAAAAGTTTCGGTGAAGTGTGCTCAAACTATGCTCGAATTTTCA
CTCTGTTTTTCTGCTTTTTGCCTCGCGAGCAGCATGGGCCTAGAGCCTAA
CTCTCTTTTGTGGGATTTATCTCCCGGCAAAATTTGCCTCTTTGGACCGC
ACGGTACTCTCATTCCATGGTCTAACGACTACGGTGTGCGTTCACAGGAG
TACCCCTTCCCTCCCCGAGTCTCTCTCTCTCACTCGTGGGATTGATCTCC
AGCAGGTGACGCAGGCCAATTCTGACCAAAAATCCGCTCAAAAGTGTCTA
ATATGCTCATTTTTTCGCTCGCCAATTCTGATACGTATGTAGTTTCGGTG
AAGTGTGCTCAAAATATGCTCGAAATTCCACTCTGTTTTTCTGCTTTTTG
CCTCGCGAGCAGCATGGGCCTGGGCCAACCCTTCCCTCCCCTTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGGGATTGATCTC
CCGCAGGTCTCGCAGGCCAATTCTGCCCGAAAATCCGCTCAAAAGTGTCT
AATATGCTCATTTTTTCGCCAATTCTGCTACGCATGTAGTTTCGGTGAAG
TGCGCTCAAAAGTTGCTCGAAATTCCACTCTGTTTTCTGCTTTTTGCCTC
GCGAGCAGCATGGGCCTGGGCCAACCCTTCCCTCCCCTTGTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCGTGGGACTGATCTCCCGCAGGTCTCG
CAAGCGTTGGCGTACCTATCCCCCGGCGAGGTCAAGGGTCTACTCCGTGA
GCTCCTTCGCGCGCTACCACCTCCGGCCACCAATCATCAGAGAGCGGCAC
CGGCGGCAGCAGCAGCGGCAGCAGCGGTAACGACGACGACCGATCCCACG
GCCGCCTCCGCCGCCGCCGCCGCCGCTGCTGGTCCTGCCGCCGCTGATGC
CGACCAACTAGAAGAAGACGGAAGCGGCGCAATTAGAAGCGGTGCAATTA
GAAGCGGCGCAATTAGCGCCACAAGTAGGGGTTTGAATGATCAGACGGAC
GATCGCCCGGAGGTCCCCGTGGTGGAACTTTCCCCGGAACGGTCTGGGAG
CGCCTCTCCGGAACGTTTTGCGGAACGGTCTGGTGGGAAAACAGCTTGTC
CGGCGGAAATCTCTGGGAAAACGGTTTCTCCGGACCCTTCTTCTTCGGAA
CGGTATCCGATACAATCTCCGGAACGTTCTGGGGGAAATTCTCGGGATGT
CCCCTCCTCTACGGCGGCGCCGCTTGTGGTCCAGGGCCTGGATCAAACGG
AAGCCGACTACCTGAGGCGAGGGGCAGGGAGGGTGCTGCGGCTGTGGGGC
ACGGCTCAAAAGGGTGGCTGGGCAGAGGTACATTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13691:175..3260-

>mRNA_E-fasciculatus_F_contig13691.2730.1 ID=mRNA_E-fasciculatus_F_contig13691.2730.1|Name=mRNA_E-fasciculatus_F_contig13691.2730.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1638bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13691:175..3260- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGATGGCGGACACGGTTCTGGGACGGGCTGGCCGGCAAGATGAGGA
TGGCGGACACGGTTCTGGGACGGGCTGGCCGGCAAGCAGGAGGGGCGGGC
GCCGCGTTTGACGTCGGGAGGATGCGGGACCGCGTGGTTAAGCTCGGAAG
CTCTGTGCGCATCGTCGGGCTTCTTTCCGCTTCGAAGAAGTCCAAGCGCT
ACTACGCGGAGCTCAAGGAGCAGGAGGGGCGGGCGCCGCGTTTGACGTCG
GGAGGATGCGGGACCGCGTGGTTAAGCTCGGAAGCTCTGTGCGCATCGTC
GGGCTTCTTTCCGCTTCGAAGAAGTCCAAGCGCTACTACGCGGAGCTCAA
GGAGGTCTCGCAAGCGTTGGCGTACCTATCCCCCGGCGAGGTCAAGGGTC
TACTCCGTGAGCTCCTTCGCGCGCTACCACCTCCGGCCACCAATCATCAG
AGAGCGGCACCGGCGGCAGCAGCAGCGGCAGCAGCGGTAACGACGACGAC
CGATCCCACGGCCGCCTCCGCCGCCGCCGCCGCCGCTGCTGGTCCTGCCG
CCGCTGATGCCGACCAACTAGAAGAAGACGGAAGCGGCGCAATTAGAAGC
GGTGCAATTAGAAGCGGCGCAATTAGCGCCACAAGTAGGGGTTTGAATGA
TCAGACGGACGATCGCCCGGAGGTCCCCGTGGTGGAACTTTCCCCGGAAC
GGTCTGGGAGCGCCTCTCCGGAACGTTTTGCGGAACGGTCTGGTGGGAAA
ACAGCTTGTCCGGCGGAAATCTCTGGGAAAACGGTTTCTCCGGACCCTTC
TTCTTCGGAACGGTATCCGATACAATCTCCGGAACGTTCTGGGGGAAATT
CTCGGGATGTCCCCTCCTCTACGGCGGCGCCGCTTGTGGTCCAGGGCCTG
GATCAAACGGAAGCCGACTACCTGAGGCGAGGGGCAGGGAGGGTGCTGCG
GCTGTGGGGCACGGCTCAAAAGGGTGGCTGGGCAGAGGTACATTGAGTCT
CGCAAGCGTTGGCGTACCTATCCCCCGGCGAGGTCAAGGGTCTACTCCGT
GAGCTCCTTCGCGCGCTACCACCTCCGGCCACCAATCATCAGAGAGCGGC
ACCGGCGGCAGCAGCAGCGGCAGCAGCGGTAACGACGACGACCGATCCCA
CGGCCGCCTCCGCCGCCGCCGCCGCCGCTGCTGGTCCTGCCGCCGCTGAT
GCCGACCAACTAGAAGAAGACGGAAGCGGCGCAATTAGAAGCGGTGCAAT
TAGAAGCGGCGCAATTAGCGCCACAAGTAGGGGTTTGAATGATCAGACGG
ACGATCGCCCGGAGGTCCCCGTGGTGGAACTTTCCCCGGAACGGTCTGGG
AGCGCCTCTCCGGAACGTTTTGCGGAACGGTCTGGTGGGAAAACAGCTTG
TCCGGCGGAAATCTCTGGGAAAACGGTTTCTCCGGACCCTTCTTCTTCGG
AACGGTATCCGATACAATCTCCGGAACGTTCTGGGGGAAATTCTCGGGAT
GTCCCCTCCTCTACGGCGGCGCCGCTTGTGGTCCAGGGCCTGGATCAAAC
GGAAGCCGACTACCTGAGGCGAGGGGCAGGGAGGGTGCTGCGGCTGTGGG
GCACGGCTCAAAAGGGTGGCTGGGCAGAGGTACATTGA
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