mRNA_E-fasciculatus_F_contig13681.2727.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13681.2727.1
Unique NamemRNA_E-fasciculatus_F_contig13681.2727.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13681.2727.1 vs. uniprot
Match: D7FI75_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI75_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 2.110e-70
Identity = 138/228 (60.53%), Postives = 146/228 (64.04%), Query Frame = 1 
Query:    1 QDPSAFELALARVNWDSASIRGVIVNFVCRSLLWGSWVTHHFYAIVKGKGPGDXXXXXXXGVSPARGGEGGLQTAAAEXXXGTTRHLE---CGAGGVVGTGENADGGREGDDGEETGCLEKLSPLRRRGKNNRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAWYSLDSRIPKPQRLGGTRGLVEHLAWEVREHHGHVFVIGGGAEAVAGVGDDGDGHAGPAENRV 675
            +DP+AFELALARV+WDSA+IRGVIVNFVCRSLLWGSWVTHHFYAIVK KGPGD       G+SP  GG          XXX  TRHLE                     GDDGE+TGC EKLSP RRRGK+NR R                             AWYSLDSRIPKPQRLGGTRGLVEHLAWEVREHHGHVFV+G GAE VAGVG D DGH G AE RV
Sbjct:   93 KDPTAFELALARVDWDSATIRGVIVNFVCRSLLWGSWVTHHFYAIVKAKGPGDGDD----GLSP--GGXXXXXXXXXXXXXXXTRHLERVGXXXXXXXXXXXXXXXXXXGDDGEQTGCFEKLSPSRRRGKDNRGRTRNRTSSNQGSCCGSDGGGAGG------TAWYSLDSRIPKPQRLGGTRGLVEHLAWEVREHHGHVFVVGEGAEEVAGVGHDSDGHVGTAEARV 308
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13681.2727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI75_ECTSI2.110e-7060.53Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13681contigE-fasciculatus_F_contig13681:89..1502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMachado-Joseph disease protein MJD
Ec32 orthologEc-23_003660.1
Exons1
Model size1414
Cds size678
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927863.1736512-CDS-E-fasciculatus_F_contig13681:88..7661622927863.1736512-CDS-E-fasciculatus_F_contig13681:88..766Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13681 89..766 +
1695995728.5013335-CDS-E-fasciculatus_F_contig13681:88..7661695995728.5013335-CDS-E-fasciculatus_F_contig13681:88..766Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13681 89..766 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927863.192131-UTR-E-fasciculatus_F_contig13681:766..15021622927863.192131-UTR-E-fasciculatus_F_contig13681:766..1502Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13681 767..1502 +
1695995728.5108674-UTR-E-fasciculatus_F_contig13681:766..15021695995728.5108674-UTR-E-fasciculatus_F_contig13681:766..1502Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13681 767..1502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13681.2727.1prot_E-fasciculatus_F_contig13681.2727.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13681 89..766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13681.2727.1

>prot_E-fasciculatus_F_contig13681.2727.1 ID=prot_E-fasciculatus_F_contig13681.2727.1|Name=mRNA_E-fasciculatus_F_contig13681.2727.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=226bp
QDPSAFELALARVNWDSASIRGVIVNFVCRSLLWGSWVTHHFYAIVKGKG
PGDDDDDDDDGVSPARGGEGGLQTAAAEGGGGTTRHLECGAGGVVGTGEN
ADGGREGDDGEETGCLEKLSPLRRRGKNNRARNRNSSDQGSCCAASGTGA
GSDGGGATGGAAWYSLDSRIPKPQRLGGTRGLVEHLAWEVREHHGHVFVI
GGGAEAVAGVGDDGDGHAGPAENRV*
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mRNA from alignment at E-fasciculatus_F_contig13681:89..1502+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13681.2727.1 ID=mRNA_E-fasciculatus_F_contig13681.2727.1|Name=mRNA_E-fasciculatus_F_contig13681.2727.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13681:89..1502+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGACCCCAGCGCCTTCGAGCTCGCGCTGGCGCGGGTGAACTGGGACTC
GGCGTCCATCCGGGGGGTGATCGTCAACTTCGTCTGCCGGAGCCTCCTGT
GGGGCTCGTGGGTCACCCACCACTTCTACGCGATCGTCAAGGGGAAGGGT
CCCGGCGACGACGACGACGACGACGACGACGGGGTATCCCCCGCCAGAGG
CGGAGAGGGGGGCCTGCAAACTGCAGCGGCGGAGGGAGGAGGGGGCACGA
CGAGACATCTCGAATGTGGTGCTGGTGGCGTTGTTGGTACGGGTGAAAAT
GCGGACGGTGGACGGGAAGGGGACGACGGGGAGGAGACGGGTTGCCTCGA
AAAGCTTAGTCCGTTGAGGCGGAGAGGCAAGAACAACCGGGCTCGAAACC
GAAACAGCAGCGACCAAGGTTCTTGCTGCGCTGCTTCTGGCACCGGCGCT
GGCAGCGATGGGGGGGGGGCGACCGGGGGAGCGGCTTGGTACAGCCTCGA
TTCCAGGATACCGAAGCCGCAACGGTTGGGGGGAACGCGCGGTCTAGTCG
AGCACCTAGCCTGGGAGGTACGGGAACATCACGGACACGTGTTTGTGATT
GGCGGCGGGGCAGAAGCAGTGGCAGGGGTGGGCGACGACGGTGACGGTCA
CGCAGGCCCCGCAGAAAATCGCGTTTAGATGTGCGGCTATCCTGAGGGCG
GGTGGGGTGCAGTGGGCCACTCCTGGGCAGGATGAACTCGTTCATGGATC
ACACGCTTTTTTAGTAGCTGGGTAAAGATGCTGTTGGGCACTGTAATTAG
ATGTCGTCAGGATCGAGGATTGCTTGTGTATGAACGTTAGAGGAACCAAG
AGGTACGGGCATCGACGTGTTGGCGCGCTAAAAGCAACAAAAGCAACAAC
AACGAAGGCCGACAAGTGCTGCGGTTTCGTGTAGTTAGGCTGGCCATAGC
CTCGTCTAGGCTTTCGTCAAACACGTGTGTGTCCCCGTTGCTGCGAGAGA
CAGCAGTGCTGAAACGGCGGCTCTAGACGACGACATAGTGCGCTCATCGT
CGCCGCCCCCTGCCGCCGCACCCGCTTGTTCCTTGGCCCCAGTCCTTAAG
AGTCACCCCCCCCGGGCATGTCGTATTTAGTTCTTCGCTAGTTTTTTGTG
CAGGGCCCGAGAGACGGTTGCTTCGTGAGCTAGTTGTAGTCAGTGGAAGC
AACTCCCAGCTTTCTGTCGAGTCAGGTCCCGATTTTGGCGCGTGTTCTGC
GCGTTGTCTCTGTGGTCTGCAGGTACTGCACGTAGCAACGCTAGAAAGAG
CCTTCTTCCGGTGGTTCCCACAGGGCAAAAAAAACAAAAAAATTAAGGGC
TGGCTTTCCCGCTTGCACGAGCGCCCTCATTGCTTGTGTAAGATTCTTGG
ACGAACGCCCACCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13681:89..1502+

>mRNA_E-fasciculatus_F_contig13681.2727.1 ID=mRNA_E-fasciculatus_F_contig13681.2727.1|Name=mRNA_E-fasciculatus_F_contig13681.2727.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13681:89..1502+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGACCCCAGCGCCTTCGAGCTCGCGCTGGCGCGGGTGAACTGGGACTC
GGCGTCCATCCGGGGGGTGATCGTCAACTTCGTCTGCCGGAGCCTCCTGT
GGGGCTCGTGGGTCACCCACCACTTCTACGCGATCGTCAAGGGGAAGGGT
CCCGGCGACGACGACGACGACGACGACGACGGGGTATCCCCCGCCAGAGG
CGGAGAGGGGGGCCTGCAAACTGCAGCGGCGGAGGGAGGAGGGGGCACGA
CGAGACATCTCGAATGTGGTGCTGGTGGCGTTGTTGGTACGGGTGAAAAT
GCGGACGGTGGACGGGAAGGGGACGACGGGGAGGAGACGGGTTGCCTCGA
AAAGCTTAGTCCGTTGAGGCGGAGAGGCAAGAACAACCGGGCTCGAAACC
GAAACAGCAGCGACCAAGGTTCTTGCTGCGCTGCTTCTGGCACCGGCGCT
GGCAGCGATGGGGGGGGGGCGACCGGGGGAGCGGCTTGGTACAGCCTCGA
TTCCAGGATACCGAAGCCGCAACGGTTGGGGGGAACGCGCGGTCTAGTCG
AGCACCTAGCCTGGGAGGTACGGGAACATCACGGACACGTGTTTGTGATT
GGCGGCGGGGCAGAAGCAGTGGCAGGGGTGGGCGACGACGGTGACGGTCA
CGCAGGCCCCGCAGAAAATCGCGTTTAGCAGGACCCCAGCGCCTTCGAGC
TCGCGCTGGCGCGGGTGAACTGGGACTCGGCGTCCATCCGGGGGGTGATC
GTCAACTTCGTCTGCCGGAGCCTCCTGTGGGGCTCGTGGGTCACCCACCA
CTTCTACGCGATCGTCAAGGGGAAGGGTCCCGGCGACGACGACGACGACG
ACGACGACGGGGTATCCCCCGCCAGAGGCGGAGAGGGGGGCCTGCAAACT
GCAGCGGCGGAGGGAGGAGGGGGCACGACGAGACATCTCGAATGTGGTGC
TGGTGGCGTTGTTGGTACGGGTGAAAATGCGGACGGTGGACGGGAAGGGG
ACGACGGGGAGGAGACGGGTTGCCTCGAAAAGCTTAGTCCGTTGAGGCGG
AGAGGCAAGAACAACCGGGCTCGAAACCGAAACAGCAGCGACCAAGGTTC
TTGCTGCGCTGCTTCTGGCACCGGCGCTGGCAGCGATGGGGGGGGGGCGA
CCGGGGGAGCGGCTTGGTACAGCCTCGATTCCAGGATACCGAAGCCGCAA
CGGTTGGGGGGAACGCGCGGTCTAGTCGAGCACCTAGCCTGGGAGGTACG
GGAACATCACGGACACGTGTTTGTGATTGGCGGCGGGGCAGAAGCAGTGG
CAGGGGTGGGCGACGACGGTGACGGTCACGCAGGCCCCGCAGAAAATCGC
GTTTAG
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