mRNA_E-fasciculatus_F_contig13672.2721.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13672.2721.1
Unique NamemRNA_E-fasciculatus_F_contig13672.2721.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13672.2721.1 vs. uniprot
Match: D8LD92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD92_ECTSI)

HSP 1 Score: 433 bits (1113), Expect = 3.310e-149
Identity = 263/334 (78.74%), Postives = 274/334 (82.04%), Query Frame = 1 
Query:    1 RRAYFKAAREEKESDREVTTPQSRAGQGTPGEDESDGPGSSTVATSPTTAISADHPSRRTGTAAAXXXXXXXPVSKPSCGSEDGG-YDSDYDGDGGCSRASQQAVLPRPPPPSPEHQTREPPHAELADAGARVGVKRLSGLLEDQRVAAAGEWEREKDGDGMTPP-DVDDQAGASAAIPSNAVETAVVAEPTGIVHADVANPQQGKQAGSSERRESPVLAKAAVVTPEGVGRVDTAPDDAPVAHVAFARGFPWQGAASRGDAAMRSPGSSAVGPARAEALASPRAAAEMRREMRRETPMPILETGRDPRIDPQTGARMPLPFLGSAPIRRVASF 996
            RRAYFKAAREEKE+DREVT+ QSRAGQGTPG DE D PGSS VATSPTTA SA HPS R G+AAA         SKPSCGS DGG YDSDYD  GGCSRASQ AVLPRPPPPSPEHQTRE PHAEL DAG RVGVKRLSGLL+DQRVAAAGEWEREKDG GMTPP DV +QAG SAAI S+AVET VVAE T IVHADVA PQQ KQA S ERR  PV AKAA VT EG+GRV T+PD   VA     RGFPW+GA   GDAAMRSPGSSAVGPARA+ALA P AAAEMRREMRRET MPILETGRDPRIDPQTGAR+ LPFLGSA IRRVASF
Sbjct:   40 RRAYFKAAREEKENDREVTS-QSRAGQGTPGRDEFDRPGSSPVATSPTTATSAGHPSSRNGSAAAAHDVDDDLPSKPSCGSRDGGGYDSDYDDRGGCSRASQ-AVLPRPPPPSPEHQTRE-PHAELDDAGVRVGVKRLSGLLDDQRVAAAGEWEREKDGGGMTPPHDVGEQAGVSAAITSSAVETVVVAESTAIVHADVAVPQQRKQAASPERRARPVPAKAAEVTAEGIGRVGTSPDITSVA-----RGFPWRGAGPLGDAAMRSPGSSAVGPARAKALACPCAAAEMRREMRRETQMPILETGRDPRIDPQTGARVSLPFLGSARIRRVASF 365
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BLAST of mRNA_E-fasciculatus_F_contig13672.2721.1 vs. uniprot
Match: A0A6H5L2K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2K1_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 5.630e-135
Identity = 258/334 (77.25%), Postives = 273/334 (81.74%), Query Frame = 1 
Query:    1 RRAYFKAAREEKESDREVTTPQSRAGQGTPGEDESDGPGSSTVATSPTTAISADHPSRRTGTAAAXXXXXXXPVSKPSCGSE-DGGYDSDYDGDGGCSRASQQAVLPRPPPPSPEHQTREPPHAELADAGARVGVKRLSGLLEDQRVAAAGEWEREKDGDGMTPPD-VDDQAGASAAIPSNAVETAVVAEPTGIVHADVANPQQGKQAGSSERRESPVLAKAAVVTPEGVGRVDTAPDDAPVAHVAFARGFPWQGAASRGDAAMRSPGSSAVGPARAEALASPRAAAEMRREMRRETPMPILETGRDPRIDPQTGARMPLPFLGSAPIRRVASF 996
            RRAYFKAAREEKESD EVT P SRAGQGTPG+DE D PGSS VATSPTTA SA   S R+G+A AXXXXXX  +SKPSCGS  DGGYDSD D  GGCSRASQ AVLPRPPPPSPEHQT E PH EL DAG  VGVKRLSGLL+DQRVA AGEWERE DG GMTPP  V++QAG+SAAI SNAVETAVVAE T  VHADV  PQQ KQA S ERRE PVLAKAAVVTP       TAP+ A VA     RGFPW+ A SRGDAAMRSPGS AVGPARAE LA PRAAAE+RRE+RRET +PILETGRDPRIDP+TGAR+PLPFLGSAPIRRVASF
Sbjct:  292 RRAYFKAAREEKESDGEVTPP-SRAGQGTPGQDEFDRPGSSPVATSPTTATSAGLSSSRSGSAVAXXXXXXDLLSKPSCGSRGDGGYDSDCDDSGGCSRASQ-AVLPRPPPPSPEHQTHE-PHVELDDAGVLVGVKRLSGLLDDQRVAVAGEWERENDGGGMTPPHAVNEQAGSSAAITSNAVETAVVAESTATVHADVFIPQQPKQAASPERREWPVLAKAAVVTP------GTAPNVASVA-----RGFPWREAGSRGDAAMRSPGSVAVGPARAEELACPRAAAEVRREIRRETQLPILETGRDPRIDPRTGARVPLPFLGSAPIRRVASF 611
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13672.2721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD92_ECTSI3.310e-14978.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2K1_9PHAE5.630e-13577.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13672contigE-fasciculatus_F_contig13672:27..1061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_002070.1
Exons2
Model size999
Cds size999
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927862.4982176-CDS-E-fasciculatus_F_contig13672:26..7501622927862.4982176-CDS-E-fasciculatus_F_contig13672:26..750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13672 27..750 +
1695995728.1619697-CDS-E-fasciculatus_F_contig13672:26..7501695995728.1619697-CDS-E-fasciculatus_F_contig13672:26..750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13672 27..750 +
1622927862.5201735-CDS-E-fasciculatus_F_contig13672:786..10611622927862.5201735-CDS-E-fasciculatus_F_contig13672:786..1061Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13672 787..1061 +
1695995728.169863-CDS-E-fasciculatus_F_contig13672:786..10611695995728.169863-CDS-E-fasciculatus_F_contig13672:786..1061Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13672 787..1061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13672.2721.1prot_E-fasciculatus_F_contig13672.2721.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13672 27..1061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13672.2721.1

>prot_E-fasciculatus_F_contig13672.2721.1 ID=prot_E-fasciculatus_F_contig13672.2721.1|Name=mRNA_E-fasciculatus_F_contig13672.2721.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=333bp
RRAYFKAAREEKESDREVTTPQSRAGQGTPGEDESDGPGSSTVATSPTTA
ISADHPSRRTGTAAARDDDDDDPVSKPSCGSEDGGYDSDYDGDGGCSRAS
QQAVLPRPPPPSPEHQTREPPHAELADAGARVGVKRLSGLLEDQRVAAAG
EWEREKDGDGMTPPDVDDQAGASAAIPSNAVETAVVAEPTGIVHADVANP
QQGKQAGSSERRESPVLAKAAVVTPEGVGRVDTAPDDAPVAHVAFARGFP
WQGAASRGDAAMRSPGSSAVGPARAEALASPRAAAEMRREMRRETPMPIL
ETGRDPRIDPQTGARMPLPFLGSAPIRRVASF*
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mRNA from alignment at E-fasciculatus_F_contig13672:27..1061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13672.2721.1 ID=mRNA_E-fasciculatus_F_contig13672.2721.1|Name=mRNA_E-fasciculatus_F_contig13672.2721.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1035bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13672:27..1061+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCGTGCGTATTTTAAGGCAGCGCGTGAGGAAAAGGAGAGCGACCGAGA
GGTAACTACGCCCCAGAGTAGGGCTGGGCAAGGAACACCTGGTGAAGACG
AGTCCGACGGACCCGGATCCTCCACGGTTGCGACGTCTCCAACGACCGCG
ATAAGCGCTGACCACCCTAGCAGGCGCACTGGCACCGCGGCAGCGCGTGA
TGATGACGACGACGACCCGGTGTCGAAACCTTCGTGCGGCAGTGAAGATG
GCGGCTACGATAGCGATTACGACGGTGACGGTGGTTGCTCACGGGCTTCG
CAGCAAGCGGTGCTGCCGCGCCCCCCGCCTCCTTCCCCTGAACACCAGAC
CCGCGAGCCTCCTCACGCGGAACTTGCCGACGCCGGTGCACGCGTCGGCG
TGAAACGGCTCTCGGGGCTGTTGGAGGACCAGCGTGTTGCCGCAGCAGGG
GAGTGGGAAAGAGAAAAAGACGGGGACGGCATGACCCCTCCCGACGTCGA
CGACCAAGCCGGAGCCTCCGCAGCGATCCCTTCGAACGCTGTGGAAACGG
CCGTTGTAGCGGAGCCGACCGGCATAGTCCATGCCGACGTCGCCAATCCT
CAGCAAGGAAAACAAGCGGGGTCCTCGGAAAGACGCGAGTCGCCGGTGCT
GGCGAAAGCCGCCGTGGTCACCCCAGAAGGTGTCGGACGGGTCGATACTG
CGCCCGATGACGCTCCCGTCGCGCGTGGGGAAGGTATCGAGCCGGTCAGA
CGTGCACCAGATGTCGCTTTCGCGCGGGGGTTTCCCTGGCAAGGGGCGGC
ATCGCGGGGGGATGCGGCCATGAGATCCCCGGGGAGCTCCGCCGTGGGGC
CGGCGAGGGCTGAAGCGCTGGCCTCCCCCCGCGCTGCCGCCGAGATGCGG
AGGGAAATGAGGCGGGAAACGCCGATGCCGATTCTGGAGACGGGGAGGGA
TCCCCGGATCGATCCGCAGACCGGCGCGAGGATGCCACTCCCGTTCCTCG
GAAGCGCGCCCATCCGGAGGGTGGCCTCTTTCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13672:27..1061+

>mRNA_E-fasciculatus_F_contig13672.2721.1 ID=mRNA_E-fasciculatus_F_contig13672.2721.1|Name=mRNA_E-fasciculatus_F_contig13672.2721.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1998bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13672:27..1061+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCGTGCGTATTTTAAGGCAGCGCGTGAGGAAAAGGAGAGCGACCGAGA
GGTAACTACGCCCCAGAGTAGGGCTGGGCAAGGAACACCTGGTGAAGACG
AGTCCGACGGACCCGGATCCTCCACGGTTGCGACGTCTCCAACGACCGCG
ATAAGCGCTGACCACCCTAGCAGGCGCACTGGCACCGCGGCAGCGCGTGA
TGATGACGACGACGACCCGGTGTCGAAACCTTCGTGCGGCAGTGAAGATG
GCGGCTACGATAGCGATTACGACGGTGACGGTGGTTGCTCACGGGCTTCG
CAGCAAGCGGTGCTGCCGCGCCCCCCGCCTCCTTCCCCTGAACACCAGAC
CCGCGAGCCTCCTCACGCGGAACTTGCCGACGCCGGTGCACGCGTCGGCG
TGAAACGGCTCTCGGGGCTGTTGGAGGACCAGCGTGTTGCCGCAGCAGGG
GAGTGGGAAAGAGAAAAAGACGGGGACGGCATGACCCCTCCCGACGTCGA
CGACCAAGCCGGAGCCTCCGCAGCGATCCCTTCGAACGCTGTGGAAACGG
CCGTTGTAGCGGAGCCGACCGGCATAGTCCATGCCGACGTCGCCAATCCT
CAGCAAGGAAAACAAGCGGGGTCCTCGGAAAGACGCGAGTCGCCGGTGCT
GGCGAAAGCCGCCGTGGTCACCCCAGAAGGTGTCGGACGGGTCGATACTG
CGCCCGATGACGCTCCCGTCGCGCAGGCGTGCGTATTTTAAGGCAGCGCG
TGAGGAAAAGGAGAGCGACCGAGAGGTAACTACGCCCCAGAGTAGGGCTG
GGCAAGGAACACCTGGTGAAGACGAGTCCGACGGACCCGGATCCTCCACG
GTTGCGACGTCTCCAACGACCGCGATAAGCGCTGACCACCCTAGCAGGCG
CACTGGCACCGCGGCAGCGCGTGATGATGACGACGACGACCCGGTGTCGA
AACCTTCGTGCGGCAGTGAAGATGGCGGCTACGATAGCGATTACGACGGT
GACGGTGGTTGCTCACGGGCTTCGCAGCAAGCGGTGCTGCCGCGCCCCCC
GCCTCCTTCCCCTGAACACCAGACCCGCGAGCCTCCTCACGCGGAACTTG
CCGACGCCGGTGCACGCGTCGGCGTGAAACGGCTCTCGGGGCTGTTGGAG
GACCAGCGTGTTGCCGCAGCAGGGGAGTGGGAAAGAGAAAAAGACGGGGA
CGGCATGACCCCTCCCGACGTCGACGACCAAGCCGGAGCCTCCGCAGCGA
TCCCTTCGAACGCTGTGGAAACGGCCGTTGTAGCGGAGCCGACCGGCATA
GTCCATGCCGACGTCGCCAATCCTCAGCAAGGAAAACAAGCGGGGTCCTC
GGAAAGACGCGAGTCGCCGGTGCTGGCGAAAGCCGCCGTGGTCACCCCAG
AAGGTGTCGGACGGGTCGATACTGCGCCCGATGACGCTCCCGTCGCGCAT
GTCGCTTTCGCGCGGGGGTTTCCCTGGCAAGGGGCGGCATCGCGGGGGGA
TGCGGCCATGAGATCCCCGGGGAGCTCCGCCGTGGGGCCGGCGAGGGCTG
AAGCGCTGGCCTCCCCCCGCGCTGCCGCCGAGATGCGGAGGGAAATGAGG
CGGGAAACGCCGATGCCGATTCTGGAGACGGGGAGGGATCCCCGGATCGA
TCCGCAGACCGGCGCGAGGATGCCACTCCCGTTCCTCGGAAGCGCGCCCA
TCCGGAGGGTGGCCTCTTTCTGAATGTCGCTTTCGCGCGGGGGTTTCCCT
GGCAAGGGGCGGCATCGCGGGGGGATGCGGCCATGAGATCCCCGGGGAGC
TCCGCCGTGGGGCCGGCGAGGGCTGAAGCGCTGGCCTCCCCCCGCGCTGC
CGCCGAGATGCGGAGGGAAATGAGGCGGGAAACGCCGATGCCGATTCTGG
AGACGGGGAGGGATCCCCGGATCGATCCGCAGACCGGCGCGAGGATGCCA
CTCCCGTTCCTCGGAAGCGCGCCCATCCGGAGGGTGGCCTCTTTCTGA
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