mRNA_E-fasciculatus_F_contig13668.2719.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13668.2719.1
Unique NamemRNA_E-fasciculatus_F_contig13668.2719.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13668.2719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13668contigE-fasciculatus_F_contig13668:1388..1803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size416
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13668.2719.1prot_E-fasciculatus_F_contig13668.2719.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13668 1439..1783 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927862.4010162-UTR-E-fasciculatus_F_contig13668:1387..14381622927862.4010162-UTR-E-fasciculatus_F_contig13668:1387..1438Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13668 1388..1438 +
1695995728.119755-UTR-E-fasciculatus_F_contig13668:1387..14381695995728.119755-UTR-E-fasciculatus_F_contig13668:1387..1438Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13668 1388..1438 +
1622927862.4227743-UTR-E-fasciculatus_F_contig13668:1783..18031622927862.4227743-UTR-E-fasciculatus_F_contig13668:1783..1803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13668 1784..1803 +
1695995728.1385412-UTR-E-fasciculatus_F_contig13668:1783..18031695995728.1385412-UTR-E-fasciculatus_F_contig13668:1783..1803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13668 1784..1803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927862.4120617-CDS-E-fasciculatus_F_contig13668:1438..17831622927862.4120617-CDS-E-fasciculatus_F_contig13668:1438..1783Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13668 1439..1783 +
1695995728.1294909-CDS-E-fasciculatus_F_contig13668:1438..17831695995728.1294909-CDS-E-fasciculatus_F_contig13668:1438..1783Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13668 1439..1783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13668.2719.1

>prot_E-fasciculatus_F_contig13668.2719.1 ID=prot_E-fasciculatus_F_contig13668.2719.1|Name=mRNA_E-fasciculatus_F_contig13668.2719.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp
MAASAKGGRSQPLQDIIPFKRSEKVQAQHWLAGIFLAQMSVSLPLDTYVK
LETHLYHRTVLLTLTYNLTIPTNINKKTCCVLKTNLSTSNVTPHIRNRNT
PNVYAPMYCLVLVP*
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mRNA from alignment at E-fasciculatus_F_contig13668:1388..1803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13668.2719.1 ID=mRNA_E-fasciculatus_F_contig13668.2719.1|Name=mRNA_E-fasciculatus_F_contig13668.2719.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=416bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13668:1388..1803+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCCTTTCCGTAGTGCTACTGCTTGTTGTTTCGGGTGGATCTCTCACGT
TATGGCGGCAAGTGCCAAAGGAGGGAGATCGCAGCCGCTTCAAGACATCA
TTCCCTTCAAGAGAAGCGAGAAAGTCCAAGCCCAGCACTGGCTAGCTGGC
ATATTTTTGGCTCAAATGTCGGTCTCCCTCCCTTTAGATACATACGTGAA
GCTCGAAACGCATCTGTATCACCGTACCGTGTTGCTAACCCTAACCTATA
ATTTAACAATACCAACCAACATCAACAAAAAAACGTGTTGTGTTCTCAAA
ACGAACCTAAGCACCAGCAACGTGACACCCCACATTCGAAATCGAAACAC
ACCCAATGTGTATGCACCGATGTATTGCTTGGTGTTGGTGCCATAACGGG
GACACGAGCAACCACT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13668:1388..1803+

>mRNA_E-fasciculatus_F_contig13668.2719.1 ID=mRNA_E-fasciculatus_F_contig13668.2719.1|Name=mRNA_E-fasciculatus_F_contig13668.2719.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13668:1388..1803+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGCAAGTGCCAAAGGAGGGAGATCGCAGCCGCTTCAAGACATCAT
TCCCTTCAAGAGAAGCGAGAAAGTCCAAGCCCAGCACTGGCTAGCTGGCA
TATTTTTGGCTCAAATGTCGGTCTCCCTCCCTTTAGATACATACGTGAAG
CTCGAAACGCATCTGTATCACCGTACCGTGTTGCTAACCCTAACCTATAA
TTTAACAATACCAACCAACATCAACAAAAAAACGTGTTGTGTTCTCAAAA
CGAACCTAAGCACCAGCAACGTGACACCCCACATTCGAAATCGAAACACA
CCCAATGTGTATGCACCGATGTATTGCTTGGTGTTGGTGCCATAAATGGC
GGCAAGTGCCAAAGGAGGGAGATCGCAGCCGCTTCAAGACATCATTCCCT
TCAAGAGAAGCGAGAAAGTCCAAGCCCAGCACTGGCTAGCTGGCATATTT
TTGGCTCAAATGTCGGTCTCCCTCCCTTTAGATACATACGTGAAGCTCGA
AACGCATCTGTATCACCGTACCGTGTTGCTAACCCTAACCTATAATTTAA
CAATACCAACCAACATCAACAAAAAAACGTGTTGTGTTCTCAAAACGAAC
CTAAGCACCAGCAACGTGACACCCCACATTCGAAATCGAAACACACCCAA
TGTGTATGCACCGATGTATTGCTTGGTGTTGGTGCCATAA
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