mRNA_E-fasciculatus_F_contig13654.2712.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13654.2712.1
Unique NamemRNA_E-fasciculatus_F_contig13654.2712.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13654.2712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13654contigE-fasciculatus_F_contig13654:18..734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size717
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13654.2712.1prot_E-fasciculatus_F_contig13654.2712.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13654 61..621 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927861.7191103-UTR-E-fasciculatus_F_contig13654:17..601622927861.7191103-UTR-E-fasciculatus_F_contig13654:17..60Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13654 18..60 +
1695995727.803711-UTR-E-fasciculatus_F_contig13654:17..601695995727.803711-UTR-E-fasciculatus_F_contig13654:17..60Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13654 18..60 +
1622927861.751976-UTR-E-fasciculatus_F_contig13654:621..7341622927861.751976-UTR-E-fasciculatus_F_contig13654:621..734Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13654 622..734 +
1695995727.8210714-UTR-E-fasciculatus_F_contig13654:621..7341695995727.8210714-UTR-E-fasciculatus_F_contig13654:621..734Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13654 622..734 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927861.7349494-CDS-E-fasciculatus_F_contig13654:60..6211622927861.7349494-CDS-E-fasciculatus_F_contig13654:60..621Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13654 61..621 +
1695995727.8127031-CDS-E-fasciculatus_F_contig13654:60..6211695995727.8127031-CDS-E-fasciculatus_F_contig13654:60..621Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13654 61..621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13654.2712.1

>prot_E-fasciculatus_F_contig13654.2712.1 ID=prot_E-fasciculatus_F_contig13654.2712.1|Name=mRNA_E-fasciculatus_F_contig13654.2712.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=187bp
MWLQADGVPNVSWRVHGAWRVHGDEPGTQFRIRAPAADGPVLVFRPRVPL
GAVSETFGYGGGVTGSRGTPGDSCCSGTYNCSQDVIMCMVHKCVVACLSL
VVWRKCVLQINEIVFPNALKTRLRSSKFKASNKEMYTNFIRFARDLVVFF
VVLLGVFVVPVCCCWWFVCGFVGTNERRGFTIRLPS*
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mRNA from alignment at E-fasciculatus_F_contig13654:18..734+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13654.2712.1 ID=mRNA_E-fasciculatus_F_contig13654.2712.1|Name=mRNA_E-fasciculatus_F_contig13654.2712.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=717bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13654:18..734+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAAGTTGAATCAGTGTCCCGAGAAAACAATGAAGGGGGGTAGATGTGGT
TGCAGGCAGATGGTGTCCCTAACGTATCCTGGAGGGTGCATGGTGCCTGG
AGGGTGCATGGTGACGAACCAGGGACGCAATTTCGTATACGTGCACCAGC
AGCAGACGGACCCGTCCTCGTATTCCGGCCACGAGTCCCACTGGGAGCGG
TCTCAGAGACGTTCGGTTATGGGGGCGGTGTTACCGGAAGTCGCGGGACC
CCGGGGGACAGTTGTTGTAGCGGTACATACAACTGCTCGCAAGACGTCAT
TATGTGCATGGTTCACAAGTGTGTTGTGGCGTGCTTGTCGCTGGTGGTGT
GGCGAAAGTGCGTCTTGCAGATAAATGAGATCGTGTTTCCGAACGCTTTG
AAAACCCGTCTGCGTAGTTCAAAGTTCAAAGCGTCCAACAAAGAAATGTA
TACAAACTTCATTAGGTTCGCTCGTGATCTGGTTGTTTTCTTCGTCGTTC
TCTTGGGTGTTTTCGTTGTTCCCGTTTGTTGTTGTTGGTGGTTTGTTTGT
GGTTTTGTAGGAACGAACGAGCGACGTGGGTTCACAATTAGACTACCAAG
CTAAATAGTGGACGTTATTTCTTTCAAATGGTTAGTATTAGACGCAGGGA
GATAAACCGCCCACCCATCAACAGTTTCTTGTTTGTTTCCTCCGTGAAAA
TGTCAACACGAACGAAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13654:18..734+

>mRNA_E-fasciculatus_F_contig13654.2712.1 ID=mRNA_E-fasciculatus_F_contig13654.2712.1|Name=mRNA_E-fasciculatus_F_contig13654.2712.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1122bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13654:18..734+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGTTGCAGGCAGATGGTGTCCCTAACGTATCCTGGAGGGTGCATGG
TGCCTGGAGGGTGCATGGTGACGAACCAGGGACGCAATTTCGTATACGTG
CACCAGCAGCAGACGGACCCGTCCTCGTATTCCGGCCACGAGTCCCACTG
GGAGCGGTCTCAGAGACGTTCGGTTATGGGGGCGGTGTTACCGGAAGTCG
CGGGACCCCGGGGGACAGTTGTTGTAGCGGTACATACAACTGCTCGCAAG
ACGTCATTATGTGCATGGTTCACAAGTGTGTTGTGGCGTGCTTGTCGCTG
GTGGTGTGGCGAAAGTGCGTCTTGCAGATAAATGAGATCGTGTTTCCGAA
CGCTTTGAAAACCCGTCTGCGTAGTTCAAAGTTCAAAGCGTCCAACAAAG
AAATGTATACAAACTTCATTAGGTTCGCTCGTGATCTGGTTGTTTTCTTC
GTCGTTCTCTTGGGTGTTTTCGTTGTTCCCGTTTGTTGTTGTTGGTGGTT
TGTTTGTGGTTTTGTAGGAACGAACGAGCGACGTGGGTTCACAATTAGAC
TACCAAGCTAAATGTGGTTGCAGGCAGATGGTGTCCCTAACGTATCCTGG
AGGGTGCATGGTGCCTGGAGGGTGCATGGTGACGAACCAGGGACGCAATT
TCGTATACGTGCACCAGCAGCAGACGGACCCGTCCTCGTATTCCGGCCAC
GAGTCCCACTGGGAGCGGTCTCAGAGACGTTCGGTTATGGGGGCGGTGTT
ACCGGAAGTCGCGGGACCCCGGGGGACAGTTGTTGTAGCGGTACATACAA
CTGCTCGCAAGACGTCATTATGTGCATGGTTCACAAGTGTGTTGTGGCGT
GCTTGTCGCTGGTGGTGTGGCGAAAGTGCGTCTTGCAGATAAATGAGATC
GTGTTTCCGAACGCTTTGAAAACCCGTCTGCGTAGTTCAAAGTTCAAAGC
GTCCAACAAAGAAATGTATACAAACTTCATTAGGTTCGCTCGTGATCTGG
TTGTTTTCTTCGTCGTTCTCTTGGGTGTTTTCGTTGTTCCCGTTTGTTGT
TGTTGGTGGTTTGTTTGTGGTTTTGTAGGAACGAACGAGCGACGTGGGTT
CACAATTAGACTACCAAGCTAA
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