mRNA_E-fasciculatus_F_contig13646.2705.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13646.2705.1
Unique NamemRNA_E-fasciculatus_F_contig13646.2705.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13646.2705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13646contigE-fasciculatus_F_contig13646:803..1623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size821
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13646.2705.1prot_E-fasciculatus_F_contig13646.2705.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13646 902..1336 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927861.0146973-UTR-E-fasciculatus_F_contig13646:802..9011622927861.0146973-UTR-E-fasciculatus_F_contig13646:802..901Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13646 803..901 +
1695995727.448131-UTR-E-fasciculatus_F_contig13646:802..9011695995727.448131-UTR-E-fasciculatus_F_contig13646:802..901Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13646 803..901 +
1622927861.0439231-UTR-E-fasciculatus_F_contig13646:1336..16231622927861.0439231-UTR-E-fasciculatus_F_contig13646:1336..1623Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13646 1337..1623 +
1695995727.466879-UTR-E-fasciculatus_F_contig13646:1336..16231695995727.466879-UTR-E-fasciculatus_F_contig13646:1336..1623Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13646 1337..1623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927861.0314898-CDS-E-fasciculatus_F_contig13646:901..13361622927861.0314898-CDS-E-fasciculatus_F_contig13646:901..1336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13646 902..1336 +
1695995727.456146-CDS-E-fasciculatus_F_contig13646:901..13361695995727.456146-CDS-E-fasciculatus_F_contig13646:901..1336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13646 902..1336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13646.2705.1

>prot_E-fasciculatus_F_contig13646.2705.1 ID=prot_E-fasciculatus_F_contig13646.2705.1|Name=mRNA_E-fasciculatus_F_contig13646.2705.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=145bp
MSKTFNTPSSTVVISRKGIVFAVCLHACVCFNKIKWWFSQFSDAPQQKDK
KRCGTAPTTLDDTTSNFTIKRKKHQHKKIAATKLRARLPHRHTDVSLLYC
IRVSKLTRTKDVLPRIKGESSRPGRYPNTNRANTSVTHIHTHKS*
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mRNA from alignment at E-fasciculatus_F_contig13646:803..1623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13646.2705.1 ID=mRNA_E-fasciculatus_F_contig13646.2705.1|Name=mRNA_E-fasciculatus_F_contig13646.2705.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=821bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13646:803..1623+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCGTACTGATCCAACACTTGACGCGGTCGATTCCCGTGGTCACAGG
CTAACTTACCCTAGAAAAGGTACACTCAACTGTATTGCAACAGACAAAAA
TGTCAAAGACTTTCAACACGCCCTCTTCGACCGTGGTCATATCTCGAAAG
GGTATAGTCTTTGCAGTGTGCTTGCATGCATGCGTGTGCTTCAACAAAAT
AAAGTGGTGGTTTTCCCAGTTTTCAGACGCACCACAACAAAAAGACAAAA
AGCGGTGCGGCACAGCACCAACAACGCTCGATGACACCACATCGAATTTC
ACAATTAAAAGAAAAAAACACCAACACAAAAAGATCGCCGCCACAAAATT
GAGAGCGCGATTACCACATAGACACACAGACGTATCGCTCCTTTACTGCA
TTCGCGTTTCAAAATTGACACGCACAAAGGATGTACTACCTCGAATAAAA
GGAGAATCCTCACGCCCGGGCCGATACCCCAACACCAACCGAGCAAACAC
CTCCGTCACACACATACATACACACAAGTCCTAGCCGAGCAAGAGCGCTT
TGCGCACGACTGGCTGCATGCACCCAATGTGTGTGTGTGTGTGTAAACAA
CCTTGCCCGCGTTCGGGGGTACGCTGACTTCCGTTTCCCCCTACACCCGG
TACTACGCGAAGAGCCCCAGCACCACTAGCGTCGACGGCACAGCCTTGCG
CCGAGAACCTCCGGCGGTAGACGTGGCTGTATCTCCGCTACATAGTCATC
GACATCCCGCCACTATTGTACATGAAGGCGCAGTCAGTATTACACGCCAA
GTGTGAGATTTTCTATTTTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13646:803..1623+

>mRNA_E-fasciculatus_F_contig13646.2705.1 ID=mRNA_E-fasciculatus_F_contig13646.2705.1|Name=mRNA_E-fasciculatus_F_contig13646.2705.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13646:803..1623+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCAAAGACTTTCAACACGCCCTCTTCGACCGTGGTCATATCTCGAAA
GGGTATAGTCTTTGCAGTGTGCTTGCATGCATGCGTGTGCTTCAACAAAA
TAAAGTGGTGGTTTTCCCAGTTTTCAGACGCACCACAACAAAAAGACAAA
AAGCGGTGCGGCACAGCACCAACAACGCTCGATGACACCACATCGAATTT
CACAATTAAAAGAAAAAAACACCAACACAAAAAGATCGCCGCCACAAAAT
TGAGAGCGCGATTACCACATAGACACACAGACGTATCGCTCCTTTACTGC
ATTCGCGTTTCAAAATTGACACGCACAAAGGATGTACTACCTCGAATAAA
AGGAGAATCCTCACGCCCGGGCCGATACCCCAACACCAACCGAGCAAACA
CCTCCGTCACACACATACATACACACAAGTCCTAGATGTCAAAGACTTTC
AACACGCCCTCTTCGACCGTGGTCATATCTCGAAAGGGTATAGTCTTTGC
AGTGTGCTTGCATGCATGCGTGTGCTTCAACAAAATAAAGTGGTGGTTTT
CCCAGTTTTCAGACGCACCACAACAAAAAGACAAAAAGCGGTGCGGCACA
GCACCAACAACGCTCGATGACACCACATCGAATTTCACAATTAAAAGAAA
AAAACACCAACACAAAAAGATCGCCGCCACAAAATTGAGAGCGCGATTAC
CACATAGACACACAGACGTATCGCTCCTTTACTGCATTCGCGTTTCAAAA
TTGACACGCACAAAGGATGTACTACCTCGAATAAAAGGAGAATCCTCACG
CCCGGGCCGATACCCCAACACCAACCGAGCAAACACCTCCGTCACACACA
TACATACACACAAGTCCTAG
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