mRNA_E-fasciculatus_F_contig13641.2702.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13641.2702.1
Unique NamemRNA_E-fasciculatus_F_contig13641.2702.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13641.2702.1 vs. uniprot
Match: D7FP02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP02_ECTSI)

HSP 1 Score: 451 bits (1161), Expect = 9.000e-159
Identity = 229/246 (93.09%), Postives = 236/246 (95.93%), Query Frame = 1 
Query:   34 QGLKGVRSPLPINGDLESDTWYQVSAVSERAEGVYSQPAYAVAKTHREPARVLDWKAAPVHGSTDSLSLLTRLDCSSAPTHEACGILRYEVTEKPPKGSPENVKPRQVAQGTAVVPDGRMTPHVVTGLSPGKAHSISMEIETPGSNGAYGPTMEVAATAFPRAPRLVTLDAARSDTEASTVIVRYKLSEPGVVHVSLVERVGHPLALIGTMIGNQHGVGFSLEVGMSAGDDDEEDGPDAALEGSQV 771
            +GLKGVRSPLPIN DLESDTWYQVSAVSERAEGVYSQPAYAVAKTHREPARVLDWKA PVHGSTDSLSLL RLDCSSAPTHEACG LRYEVTEKPPKGSP N KPRQVAQGTAVV DGR+TPHVV+GLSPGKAHSISM IETPGSNGAYGPTMEVAAT FPRAPRLVTLDAARSDTEASTVIVRYKLSEPGVVHVSLVERVGHPLALIGTMIGNQHGVGFS+EVGMSAGD++EEDG D+ALEGSQV
Sbjct:   50 EGLKGVRSPLPINDDLESDTWYQVSAVSERAEGVYSQPAYAVAKTHREPARVLDWKATPVHGSTDSLSLLIRLDCSSAPTHEACGTLRYEVTEKPPKGSPANAKPRQVAQGTAVVADGRLTPHVVSGLSPGKAHSISMAIETPGSNGAYGPTMEVAATTFPRAPRLVTLDAARSDTEASTVIVRYKLSEPGVVHVSLVERVGHPLALIGTMIGNQHGVGFSVEVGMSAGDEEEEDGSDSALEGSQV 295
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13641.2702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP02_ECTSI9.000e-15993.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13641contigE-fasciculatus_F_contig13641:851..2545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_005000.1
Exons4
Model size771
Cds size771
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13641.2702.1prot_E-fasciculatus_F_contig13641.2702.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13641 851..2545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927860.8080351-CDS-E-fasciculatus_F_contig13641:850..11461622927860.8080351-CDS-E-fasciculatus_F_contig13641:850..1146Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13641 851..1146 +
1695995727.34378-CDS-E-fasciculatus_F_contig13641:850..11461695995727.34378-CDS-E-fasciculatus_F_contig13641:850..1146Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13641 851..1146 +
1622927860.8231454-CDS-E-fasciculatus_F_contig13641:1478..16111622927860.8231454-CDS-E-fasciculatus_F_contig13641:1478..1611Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13641 1479..1611 +
1695995727.3563874-CDS-E-fasciculatus_F_contig13641:1478..16111695995727.3563874-CDS-E-fasciculatus_F_contig13641:1478..1611Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13641 1479..1611 +
1622927860.8414853-CDS-E-fasciculatus_F_contig13641:1784..19551622927860.8414853-CDS-E-fasciculatus_F_contig13641:1784..1955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13641 1785..1955 +
1695995727.3642735-CDS-E-fasciculatus_F_contig13641:1784..19551695995727.3642735-CDS-E-fasciculatus_F_contig13641:1784..1955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13641 1785..1955 +
1622927860.8615682-CDS-E-fasciculatus_F_contig13641:2374..25451622927860.8615682-CDS-E-fasciculatus_F_contig13641:2374..2545Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13641 2375..2545 +
1695995727.3767037-CDS-E-fasciculatus_F_contig13641:2374..25451695995727.3767037-CDS-E-fasciculatus_F_contig13641:2374..2545Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13641 2375..2545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13641.2702.1

>prot_E-fasciculatus_F_contig13641.2702.1 ID=prot_E-fasciculatus_F_contig13641.2702.1|Name=mRNA_E-fasciculatus_F_contig13641.2702.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=257bp
MVFSSPVSPIDQGLKGVRSPLPINGDLESDTWYQVSAVSERAEGVYSQPA
YAVAKTHREPARVLDWKAAPVHGSTDSLSLLTRLDCSSAPTHEACGILRY
EVTEKPPKGSPENVKPRQVAQGTAVVPDGRMTPHVVTGLSPGKAHSISME
IETPGSNGAYGPTMEVAATAFPRAPRLVTLDAARSDTEASTVIVRYKLSE
PGVVHVSLVERVGHPLALIGTMIGNQHGVGFSLEVGMSAGDDDEEDGPDA
ALEGSQV
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mRNA from alignment at E-fasciculatus_F_contig13641:851..2545+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13641.2702.1 ID=mRNA_E-fasciculatus_F_contig13641.2702.1|Name=mRNA_E-fasciculatus_F_contig13641.2702.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1695bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13641:851..2545+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGTTTTCTTCTCCCGTTTCACCGATCGATCAGGGTCTGAAAGGCGT
GCGCTCCCCCCTTCCGATCAACGGCGATCTGGAGAGCGACACCTGGTATC
AGGTGTCGGCAGTTTCCGAGCGCGCAGAAGGCGTTTACAGCCAGCCAGCC
TATGCCGTAGCCAAGACCCACCGAGAGCCGGCAAGAGTACTCGACTGGAA
AGCCGCGCCGGTTCATGGCTCTACCGATTCCTTATCATTGCTGACAAGGC
TGGACTGCTCCTCGGCACCCACACACGAGGCTTGCGGGATTTTGAGGTGC
GGAGAGAAAATTGGTGCAACAGAACGAACGGCAGCAGTACTAGATTGAAG
CTCGTAGGGTAAAAAATGGCGGTAGCAGGAGATTGTGGCGGTAGCTATCT
CCGGCGATGTTGCGTGAGGATCATGCCAAGAAAACGCCCAAGAATGGTAA
CTGCGTTGCGGCCGGAAGGGGAATGCTCTCATGTTTCGTCGCCCGGTTGC
AGAGGAAATAAGAGGCTGCTGGTCAGCAAGGACTGTCTGTATCTCGCAAC
CACCCGACAAGATTTGCACGCTCAACCTCTACTTGCTTTGCATATCTGTT
CCATCGCATGTGCCGCCACCCGTGTCAGGTATGAAGTGACCGAGAAGCCG
CCCAAGGGATCCCCGGAGAACGTCAAGCCTCGCCAAGTTGCTCAAGGCAC
GGCGGTGGTTCCTGATGGACGTATGACACCCCATGTGGTAACCGGGTTGT
CGCCCGGAAAGGTGCGGTACAACAGCGTTCTACAATTTCTCTCTCTTTTC
TCCTTTCTTCAGTTTACGACCCGCCTTGCCTCACCATTGGAGTGCTGAAG
AACTTGTGCTTCATCGCTCAGTCCCGGTACCTCCGTCAACTTTGAACAGA
TATGACACTTGCTTATGTACCCTCATTGTCTCAGGCCCACTCGATTTCTA
TGGAGATCGAGACTCCGGGCTCCAACGGGGCGTACGGTCCGACCATGGAG
GTGGCCGCGACTGCATTCCCGCGCGCACCCAGGCTCGTCACGCTAGACGC
AGCGAGGTCTGACACCGAGGCGTCGACCGTGATTGTGCGGTACAAACTTT
CCGAGGTCAGACGAGCATTTTCTCATTAGCTCGTATTTCTTCGGGTAGGA
GAGGGCGCCCATGACTGCTGTTACAGCGGCGGATATGTTTGCCACAATCC
GCTAGTTGTCATCCAGCATTGTTGCGTGTGTCCGGCATTTCTTGCAGTTC
GGGAAAGGATTGAGAAAACCGTCCTTTCATGGGCCCGTTGGGAGTTTGAC
CCTCTGGAAAGCCCTAGTGGGGAAAAGTCTCGAATCGTCTTTTTTTTAGT
TGACGTTGGGCGAAAGAGAACTGTGAGAGAGACAGAGAGAGCGACAGAGA
GAGAAAGGGGGGGAGGGGACTCGAACAGAGAACTTTCAAAACGAGAAAAC
TCTTAAAAGAGAGAGAGCTTTACCAAATGCTCCCTCCTTCCACCCCCTCC
TTGATATTCTAAACATGTGCACAGCCTGGAGTGGTACATGTCAGTCTCGT
CGAGAGGGTAGGCCACCCCTTGGCCTTGATCGGGACCATGATCGGGAACC
AGCATGGCGTGGGATTTTCTCTGGAAGTTGGCATGTCTGCAGGCGATGAC
GACGAAGAGGACGGACCTGACGCAGCCTTGGAAGGATCACAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13641:851..2545+

>mRNA_E-fasciculatus_F_contig13641.2702.1 ID=mRNA_E-fasciculatus_F_contig13641.2702.1|Name=mRNA_E-fasciculatus_F_contig13641.2702.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1542bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13641:851..2545+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGTTTTCTTCTCCCGTTTCACCGATCGATCAGGGTCTGAAAGGCGT
GCGCTCCCCCCTTCCGATCAACGGCGATCTGGAGAGCGACACCTGGTATC
AGGTGTCGGCAGTTTCCGAGCGCGCAGAAGGCGTTTACAGCCAGCCAGCC
TATGCCGTAGCCAAGACCCACCGAGAGCCGGCAAGAGTACTCGACTGGAA
AGCCGCGCCGGTTCATGGCTCTACCGATTCCTTATCATTGCTGACAAGGC
TGGACTGCTCCTCGGCACCCACACACGAGGCTTGCGGGATTTTGAGATGG
TGTTTTCTTCTCCCGTTTCACCGATCGATCAGGGTCTGAAAGGCGTGCGC
TCCCCCCTTCCGATCAACGGCGATCTGGAGAGCGACACCTGGTATCAGGT
GTCGGCAGTTTCCGAGCGCGCAGAAGGCGTTTACAGCCAGCCAGCCTATG
CCGTAGCCAAGACCCACCGAGAGCCGGCAAGAGTACTCGACTGGAAAGCC
GCGCCGGTTCATGGCTCTACCGATTCCTTATCATTGCTGACAAGGCTGGA
CTGCTCCTCGGCACCCACACACGAGGCTTGCGGGATTTTGAGGTATGAAG
TGACCGAGAAGCCGCCCAAGGGATCCCCGGAGAACGTCAAGCCTCGCCAA
GTTGCTCAAGGCACGGCGGTGGTTCCTGATGGACGTATGACACCCCATGT
GGTAACCGGGTTGTCGCCCGGAAAGGTATGAAGTGACCGAGAAGCCGCCC
AAGGGATCCCCGGAGAACGTCAAGCCTCGCCAAGTTGCTCAAGGCACGGC
GGTGGTTCCTGATGGACGTATGACACCCCATGTGGTAACCGGGTTGTCGC
CCGGAAAGGCCCACTCGATTTCTATGGAGATCGAGACTCCGGGCTCCAAC
GGGGCGTACGGTCCGACCATGGAGGTGGCCGCGACTGCATTCCCGCGCGC
ACCCAGGCTCGTCACGCTAGACGCAGCGAGGTCTGACACCGAGGCGTCGA
CCGTGATTGTGCGGTACAAACTTTCCGAGGCCCACTCGATTTCTATGGAG
ATCGAGACTCCGGGCTCCAACGGGGCGTACGGTCCGACCATGGAGGTGGC
CGCGACTGCATTCCCGCGCGCACCCAGGCTCGTCACGCTAGACGCAGCGA
GGTCTGACACCGAGGCGTCGACCGTGATTGTGCGGTACAAACTTTCCGAG
CCTGGAGTGGTACATGTCAGTCTCGTCGAGAGGGTAGGCCACCCCTTGGC
CTTGATCGGGACCATGATCGGGAACCAGCATGGCGTGGGATTTTCTCTGG
AAGTTGGCATGTCTGCAGGCGATGACGACGAAGAGGACGGACCTGACGCA
GCCTTGGAAGGATCACAGGTGCCTGGAGTGGTACATGTCAGTCTCGTCGA
GAGGGTAGGCCACCCCTTGGCCTTGATCGGGACCATGATCGGGAACCAGC
ATGGCGTGGGATTTTCTCTGGAAGTTGGCATGTCTGCAGGCGATGACGAC
GAAGAGGACGGACCTGACGCAGCCTTGGAAGGATCACAGGTG
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